mRNA_A-nodosum_M_contig1022.37.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1022.37.1
Unique NamemRNA_A-nodosum_M_contig1022.37.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1022.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1022contigA-nodosum_M_contig1022:262483..263950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size599
Hectar predicted targeting categoryother localisation
Exons3
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866387.3708422-CDS-A-nodosum_M_contig1022:262482..2626861680866387.3708422-CDS-A-nodosum_M_contig1022:262482..262686Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 262483..262686 +
1680866387.4418533-CDS-A-nodosum_M_contig1022:263102..2631951680866387.4418533-CDS-A-nodosum_M_contig1022:263102..263195Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 263103..263195 +
1680866387.4567583-CDS-A-nodosum_M_contig1022:263650..2639501680866387.4567583-CDS-A-nodosum_M_contig1022:263650..263950Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 263651..263950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1022.37.1prot_A-nodosum_M_contig1022.37.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1022 262483..263950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1022.37.1

>prot_A-nodosum_M_contig1022.37.1 ID=prot_A-nodosum_M_contig1022.37.1|Name=mRNA_A-nodosum_M_contig1022.37.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=199bp
DAFGGGAIGALREEATGASGGDFVLDNTTRVLDNEVRDFGSLRDHLSRPS
HRHTTRVSPPPLTAFRIMMSPSWTGRTAGDVPANAGTAERVPGLLEPREI
VDDHAGKTHKEKNVEDLRLLMSPRRSPAEKQNASKSVKGPSVGFRARKVR
HSLKAQNFLQFGLRGIAGQRALVEDTGNDLEVVVSMEEMKEDIEDQKEE
back to top

mRNA from alignment at A-nodosum_M_contig1022:262483..263950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1022.37.1 ID=mRNA_A-nodosum_M_contig1022.37.1|Name=mRNA_A-nodosum_M_contig1022.37.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1468bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:262483..263950+ (Ascophyllum nodosum dioecious)
GACGCCTTCGGGGGGGGCGCGATAGGGGCCTTGAGGGAAGAAGCGACAGG
TGCCTCGGGGGGGGATTTTGTCCTGGACAACACAACACGTGTCTTGGACA
ACGAGGTTCGAGATTTCGGCTCCTTGCGGGATCACCTCTCCCGGCCTTCT
CACAGGCACACGACCAGGGTGTCACCCCCACCCCTCACAGCTTTCAGAAT
CATGGTACGTCCTAATTGAAACGCGACATGAAGCTTTTTTGACGCAAGGT
TAAGCGGTGCCTCACAAGCGCGAGTCCCTTAGCCTTCGTTATGTACCGTT
CCCCTTCGGCGACGACTACCAGCTTCTAGGACACGGTTCCTTCCATAGGG
TGTATATGGGTCCTTCACAAGGGCATAGCCCCATCCGTCGAATAGTTCCC
ACTGATGGTCGGATTCCTCGACCGCCTGTTGAGGATAGTGTTTTCGCGGT
AAGATGCCGTTGGTTGTACTATAATACCTAGCTCAATCTATCGGGAAAAA
TCGTGACAAAATGCTACAGAATCATACGTATGTACCCAGCCTTCCCGCGA
GAGGCCGTTCGGACGCGCTATCTATCCCGAGCGACGATGCTCCAACTCCA
ACGTGTTACAATTCTAACAGATGTCTCCTAGCTGGACGGGGAGAACGGCT
GGCGACGTACCCGCCAATGCCGGTACGGCAGAACGTGTCCCGGGGCTTCT
GGAGCCTCGAGAGGTAGGAACGCTGTGCCACGGGCGAAAGTGAAGTCTAG
GTACTTGTTACAGAAAATATTGTTTCAGATGAGCCCTCGGAAGGCGTCAA
AATAAATTGCCCAATTCCTTACGCTGTTGTTTCTTTAGTTGTTGGTTGTG
TTGGCCAGCTTCAAAGCGGTGGCCCATCTCTTCGAAGCAAAGACTGTGCT
CCATGCCGTCCCTGTTTTGAAGAAAAACTATTTTAACGCATCGGATACTT
ACCCAACATACTCCTCCGGAGTGTGTTTCGTCAGCAAGGTCTCCAGAAAC
AACCCCGGCCGAATCACTTTGCACGAAACAGCAAACGTTACTTGCCCCCT
TCCCTACCCCCCCCAGCCCCCCGTCGCAAGTTGCCTCTCGATCGGTTCCG
GTCCGACCCATACGAGCCTTTTGCAAATAATCTATCTCGTAACAATCTTG
TGTCTGAATGCCGTCTAGATTGTTGACGACCACGCGGGTAAAACCCACAA
GGAAAAAAACGTGGAGGACCTCCGGTTGCTCATGTCACCTCGCCGAAGTC
CGGCAGAGAAGCAAAATGCATCCAAAAGCGTCAAGGGACCATCGGTGGGC
TTCAGGGCACGGAAAGTTAGACATTCTTTGAAAGCGCAAAATTTTCTGCA
GTTCGGGCTTCGAGGTATTGCCGGTCAACGGGCACTAGTTGAAGACACTG
GCAACGACTTGGAAGTCGTCGTGTCCATGGAGGAGATGAAGGAGGACATT
GAGGACCAGAAAGAGGAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1022:262483..263950+

>mRNA_A-nodosum_M_contig1022.37.1 ID=mRNA_A-nodosum_M_contig1022.37.1|Name=mRNA_A-nodosum_M_contig1022.37.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=597bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:262483..263950+ (Ascophyllum nodosum dioecious)
GACGCCTTCGGGGGGGGCGCGATAGGGGCCTTGAGGGAAGAAGCGACAGG
TGCCTCGGGGGGGGATTTTGTCCTGGACAACACAACACGTGTCTTGGACA
ACGAGGTTCGAGATTTCGGCTCCTTGCGGGATCACCTCTCCCGGCCTTCT
CACAGGCACACGACCAGGGTGTCACCCCCACCCCTCACAGCTTTCAGAAT
CATGATGTCTCCTAGCTGGACGGGGAGAACGGCTGGCGACGTACCCGCCA
ATGCCGGTACGGCAGAACGTGTCCCGGGGCTTCTGGAGCCTCGAGAGATT
GTTGACGACCACGCGGGTAAAACCCACAAGGAAAAAAACGTGGAGGACCT
CCGGTTGCTCATGTCACCTCGCCGAAGTCCGGCAGAGAAGCAAAATGCAT
CCAAAAGCGTCAAGGGACCATCGGTGGGCTTCAGGGCACGGAAAGTTAGA
CATTCTTTGAAAGCGCAAAATTTTCTGCAGTTCGGGCTTCGAGGTATTGC
CGGTCAACGGGCACTAGTTGAAGACACTGGCAACGACTTGGAAGTCGTCG
TGTCCATGGAGGAGATGAAGGAGGACATTGAGGACCAGAAAGAGGAG
back to top