mRNA_A-nodosum_M_contig102.93.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.93.1
Unique NamemRNA_A-nodosum_M_contig102.93.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 2.540e-126
Identity = 200/270 (74.07%), Postives = 227/270 (84.07%), Query Frame = 3
Query:  114 TLVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPSEDGQRDEGQ-PEPFEL 920
            +L LS+++  T ++FV  C   +  G TAR + + Q+T  LRM Y KVFVAGGA+GVGRA+IDKLV QGSEVVALVRREDAK+EL+AI GV+A VCDALDLKGVE+VLDGCDAAI+TLGG P+GDE KRVDY GNRNVIESAGILGITR+V+V+SVGCGS+REAISD VYQVLE ALKAKT AENMLLKYYTNSEWTIIRPGGLK+DAAT TAILTED+K AGVINRADVADL VQALNSP TVRKILTA+DP+     D  + P  F L
Sbjct:    6 SLCLSLVYLGTVTSFVTPCAWNKVTG-TARSTISGQSTG-LRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSTVRKILTAVDPAVQSSYDSAEKPAAFAL 273          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA)

HSP 1 Score: 275 bits (704), Expect = 7.360e-89
Identity = 152/264 (57.58%), Postives = 190/264 (71.97%), Query Frame = 3
Query:  132 LFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPSEDGQ-RDEGQPEPFEL 920
            LF    +    SCV   A  +   ++   +++  L M Y KVFVAGG+ GVGR ++++LV++G +VVA+VRREDA EEL+AI GVTA + DALDLKGVE  LDGCDAAI+TLGG+     E RVDY GNRNVIESAGILG+TR++LV+SVGCG +R AISD VY  LE AL AKTKAE ML KYYTN+ WTIIRPGGL+    T  AILTE+  +AG+I RADVAD+VV+AL++  T +K+ TA+DPS      D  + E F L
Sbjct:    4 LFVCVSALAAVSCVE--AFLAPMSVARTARSSSSLSMAYNKVFVAGGSSGVGREVVNQLVSKGKQVVAIVRREDALEELNAIEGVTAVMVDALDLKGVEGALDGCDAAITTLGGSSG---ENRVDYEGNRNVIESAGILGVTRVILVTSVGCGDSRGAISDQVYTSLEKALVAKTKAEKMLQKYYTNAFWTIIRPGGLQTAEGTGKAILTENKTIAGIIRRADVADVVVRALDNDGTHKKVFTAVDPSIPSSFGDASKAEAFPL 262          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S2V5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P0_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.970e-86
Identity = 143/260 (55.00%), Postives = 186/260 (71.54%), Query Frame = 3
Query:  111 RTLVLSVLFTATPSAFVP---SCVRERALG---STARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDP 872
            + L + + F +T  AF+    SC   R      +T + S+ +     L M YKKVFVAG A+GVGR ++++LVA+  EVVA VRRE+AK+EL  + GVTA + DAL  K VE  +DGCDAA++TLG  P  ++  +VDY GN NVIE+AGILG+TR +LV+SVGCG ++EA+S   Y+ LENALKAK KAE +L KYYTNS+WT+IRPGGL N  AT  A+LTE+    GVINRADVA LVV+AL+S +T RK+LTA+DP
Sbjct:   14 KALAIKMKFISTALAFIMMVISCESFRTPSIQIATRKSSNLNANRAQLEMAYKKVFVAGAAKGVGRQIVEQLVAKDVEVVAFVRREEAKQELGGLKGVTAILGDALVQKDVEGAMDGCDAAVTTLGSAPTDEQRWKVDYDGNVNVIEAAGILGVTRCILVTSVGCGDSKEAVSPDAYEKLENALKAKEKAERVLTKYYTNSDWTVIRPGGLMNGEATSAAVLTENKMACGVINRADVASLVVKALDSQKTFRKVLTAVDP 273          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC)

HSP 1 Score: 268 bits (684), Expect = 9.220e-86
Identity = 141/220 (64.09%), Postives = 172/220 (78.18%), Query Frame = 3
Query:  246 YKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGG-TPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPSEDGQRDEGQ 902
            YKKVFVAGG RGVGR ++D+L+ QGSEVVALVR EDA +EL+AI GVTA   DA + K VE+ +DGCDAAI+TLGG T DG   KRVDY GN NVIESAGILG+TR++LV+SVGCGS++EA    V++ L+  L AK KAEN+L+KYYTN  WTIIRPGGLK++ AT  AILTED++  G I+R DVA L ++ALNS  T RK+LTAIDPS D    +G+
Sbjct:   43 YKKVFVAGGTRGVGRCIVDQLLGQGSEVVALVRSEDALKELNAIEGVTAIRGDAFEQKAVENAMDGCDAAITTLGGATSDGG--KRVDYDGNSNVIESAGILGVTRVILVTSVGCGSSKEAAPPNVFEALKEVLTAKEKAENVLIKYYTNMNWTIIRPGGLKSEPATGKAILTEDTRAIGTIHREDVAALAIKALNSSNTERKVLTAIDPSIDSAVSDGK 260          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA)

HSP 1 Score: 265 bits (678), Expect = 6.530e-85
Identity = 152/274 (55.47%), Postives = 191/274 (69.71%), Query Frame = 3
Query:  105 VCRTLVLSV-LFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPS-EDGQRDEGQPEPFEL 920
            + R L+LS  LF A   AFVP+        +TA           L   YK VFVAGG++GVGR +IDKL+ QGS+VVALVR+E+   +L++I GVTA V DA D K VE+ +DGCDAAI+TLGG+   D   R+DY GN NVIESAGILG+ R++LV+SVGCGS++EA  + V++ L+  L AK KAEN+L+KYYTNS W+IIRPGGLK++ AT  AILTED+K  G I+R DVA LVV+ L SP+T RKILTAIDPS E       + E F L
Sbjct:    2 LARGLLLSTCLFLAGVQAFVPAPPLSVPPSNTA-----------LFATYKNVFVAGGSKGVGRLVIDKLLEQGSKVVALVRKEEVAADLNSIEGVTAIVGDAFDQKTVENAMDGCDAAITTLGGSTQ-DTGARIDYAGNSNVIESAGILGVQRIILVTSVGCGSSKEAAPEAVFEALKEVLLAKEKAENVLIKYYTNSNWSIIRPGGLKSEPATGNAILTEDNKTIGTIHREDVASLVVRCLESPKTERKILTAIDPSIESAVATGAEVEAFAL 263          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S0AIJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIJ9_9STRA)

HSP 1 Score: 264 bits (674), Expect = 4.160e-84
Identity = 149/272 (54.78%), Postives = 194/272 (71.32%), Query Frame = 3
Query:   96 TMKVCRTLVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQV---LRMV--------YKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLG-GT-PDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDP 872
            T++      L+ +  +  SAF P       +GS +  SH H T+     LRM         Y KVFVAGG+RGVGRA++D L++ GSEVVALVR ++A+ EL A++GVT    DA D K VE  +DGCDAAI+T+G GT P G+  KRVDY GN NVIE+AGILG+TR+VLV+S+GCGS++EA   +V++VL++ L AK +AEN+L+KYYTN  WTI+RPGGLK++ AT TAILTE++   G I+R DVADLVVQALNS  T RKIL+A+DP
Sbjct:    4 TLRTALLFALAAIAASAVSAFAP-------IGSEST-SHRHATSPPATGLRMAGDAAPASKYSKVFVAGGSRGVGRAVVDGLLSAGSEVVALVRTDEAEAELSALDGVTVARGDAFDYKAVEGAMDGCDAAITTMGQGTDPVGENGKRVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIVRPGGLKSEPATGTAILTENNLAIGSIHREDVADLVVQALNSGNTERKILSAVDP 267          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA)

HSP 1 Score: 261 bits (667), Expect = 5.230e-83
Identity = 139/255 (54.51%), Postives = 186/255 (72.94%), Query Frame = 3
Query:  117 LVLSVLFTATPSAFVP-SCVRERALGSTARISHA--HQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDP 872
            L  + L     SAFVP S    R   S+A+ S++  +         Y KVFVAGG++GVGR ++DKLV  G+ VVALVR E+A  EL+A++GVTA + DA D K VE  +DGCDAA+STLGG    + ++RVDY GN NVIE+AGILG+TR+VL++S+GCGS++EA   +V++VL++ L AK +AEN+L+KYYTN+ WTIIRPGGLK++ AT  AILTED+   G I+R DVA L +QAL SP+T +KIL+A+DP
Sbjct:    7 LAAAALLAGVCSAFVPASTFVSRTTASSAKKSYSSLYMVEGQGGQTYNKVFVAGGSKGVGRLVVDKLVGSGTGVVALVRSEEAAAELNALDGVTAVIGDAFDYKAVEGAMDGCDAAMSTLGGGTVEEGKQRVDYEGNSNVIEAAGILGVTRVVLITSIGCGSSKEAAPPSVFEVLKDVLSAKERAENILIKYYTNTNWTIIRPGGLKSEPATGKAILTEDNMAIGSIHREDVAALAIQALTSPKTKQKILSAVDP 261          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A6U3NUE1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUE1_9STRA)

HSP 1 Score: 258 bits (658), Expect = 1.120e-81
Identity = 138/257 (53.70%), Postives = 185/257 (71.98%), Query Frame = 3
Query:  111 RTLVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMV--YKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPS 875
            R L+LS L     S   P+ V  R + ST +   A   +  L  +  YKKVFVAGG++GVGR ++DKL+  GSEVVALVR ++A +EL A+ GVTA + DA + K VE  +DGCDAAI+TLG    G++ KRVDY GN NVIE+AGILG+TR++L++S+GCGS++EA   +V++VL++ L AK +AEN+L+KYYTN  WTIIRPGGLK++  T  AILTED+   G I+R DVA L V+AL S +T RK+L+A+D S
Sbjct:    5 RLLILSALVAIVASFAPPAFVSTRTI-STIKDGVASSASSSLTSLDAYKKVFVAGGSKGVGRHIVDKLIEDGSEVVALVRSQEAIDELSALEGVTAILGDAFEYKNVEGAMDGCDAAITTLGQGTAGEDGKRVDYEGNSNVIEAAGILGVTRVILITSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIIRPGGLKSEPGTGEAILTEDAMAIGSIHREDVAALAVKALTSSKTERKVLSAVDQS 260          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: B8C036_THAPS (NAD(P)-bd_dom domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C036_THAPS)

HSP 1 Score: 256 bits (654), Expect = 4.240e-81
Identity = 141/264 (53.41%), Postives = 188/264 (71.21%), Query Frame = 3
Query:  117 LVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDE-EKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPS-EDGQRDEGQ 902
            L+L+    A  SAF P+   +R   +  + S  +   Q     YKKVFVAGG++GVGR ++DKLV+ G+EVVALVR ++A +EL A++GVTA   DA+D K VE  +DGCDAAI+TLGG  +  E EK VDY GN NVIE+AGILG+TR+VLV+S+GCGS++EA   +VY+VL++ L  K KAE +L +YYTN  WTI+RPGGL ++  T  A+LTED+   G I+R DVADLVV+AL+S  T +KIL+A+DPS E     EG+
Sbjct:    6 LLLATALAAASSAFAPTAFVQRVAPAPTQRSALYMV-QGQGDSYKKVFVAGGSKGVGRLVVDKLVSNGAEVVALVRSDEAVDELSALDGVTAIKGDAMDYKTVEGAMDGCDAAITTLGGGHNVAEGEKYVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEATPPSVYEVLKDVLVQKEKAEKVLTRYYTNMNWTIVRPGGLVSEPPTGKAVLTEDTMAIGSIHRGDVADLVVKALSSKNTEKKILSAVDPSIESASNPEGK 268          
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S2HK64_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HK64_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.410e-80
Identity = 139/259 (53.67%), Postives = 186/259 (71.81%), Query Frame = 3
Query:  111 RTLVLSVLFTATPSA-FVPSCVRERALGS---TARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPS 875
            R L LS L  A  S   V S      LGS   + + S +   T      YKKVFVAGG++GVGR ++DKL+  GSEVVALVR ++A +EL AI+GVT  + DA + K VE+ +DGCDAAI+TLG     ++ KRVDY GN NVIE+AGILG+TR++LV+S+GCGS++EA   +V++VL++ L AK +AEN+L+KYYTN+ WTI+RPGGLK++ AT  AILTED+   G I+R DVA L+V+AL S +T RK+L+A+D S
Sbjct:    5 RLLALSALGAALFSCQLVASFAPPAFLGSRRTSTQASGSSSATTTSLDAYKKVFVAGGSKGVGRLIVDKLIEDGSEVVALVRSQEAVDELGAIDGVTPILGDAFEYKNVENAMDGCDAAITTLGQGSATEDGKRVDYEGNSNVIEAAGILGVTRVILVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNTNWTIVRPGGLKSEPATGEAILTEDAMAIGSIHREDVASLIVKALTSSKTERKVLSAVDQS 263          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ06_ECTSI2.540e-12674.07Epimerase/dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
A0A835Z825_9STRA7.360e-8957.58Epimerase/dehydrogenase n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V5P0_9STRA1.970e-8655.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
B7FVE3_PHATC9.220e-8664.09Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3L6R6_9STRA6.530e-8555.47Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0AIJ9_9STRA4.160e-8454.78Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2UDM5_9STRA5.230e-8354.51Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U3NUE1_9STRA1.120e-8153.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8C036_THAPS4.240e-8153.41NAD(P)-bd_dom domain-containing protein n=1 Tax=Th... [more]
A0A7S2HK64_9STRA1.410e-8053.67Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:740334..741812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJ06
PFAMsNAD_binding_10
Model size970
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons4
Evalue8.09e-127
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Ec32 ortholog descriptionepimerase/dehydrogenase
Ec32 orthologEc-07_004910.1
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
Cds size825
COG categoryGM
BiGG ReactioniRC1080.CRv4_Au5_s6_g13409_t1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.93.1prot_A-nodosum_M_contig102.93.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 740381..741714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866384.2411778-UTR-A-nodosum_M_contig102:740333..7403801680866384.2411778-UTR-A-nodosum_M_contig102:740333..740380Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 740334..740380 -
1680866384.2960043-UTR-A-nodosum_M_contig102:741714..7418121680866384.2960043-UTR-A-nodosum_M_contig102:741714..741812Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 741715..741812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866384.2579803-CDS-A-nodosum_M_contig102:740380..7406771680866384.2579803-CDS-A-nodosum_M_contig102:740380..740677Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 740381..740677 -
1680866384.269154-CDS-A-nodosum_M_contig102:740802..7410471680866384.269154-CDS-A-nodosum_M_contig102:740802..741047Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 740803..741047 -
1680866384.2773614-CDS-A-nodosum_M_contig102:741188..7413941680866384.2773614-CDS-A-nodosum_M_contig102:741188..741394Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 741189..741394 -
1680866384.285553-CDS-A-nodosum_M_contig102:741637..7417141680866384.285553-CDS-A-nodosum_M_contig102:741637..741714Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 741638..741714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.93.1

>prot_A-nodosum_M_contig102.93.1 ID=prot_A-nodosum_M_contig102.93.1|Name=mRNA_A-nodosum_M_contig102.93.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=275bp
MKVCRTLVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVY
KKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEV
CDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGIL
GITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSE
WTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVR
KILTAIDPSEDGQRDEGQPEPFEL*
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mRNA from alignment at A-nodosum_M_contig102:740334..741812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.93.1 ID=mRNA_A-nodosum_M_contig102.93.1|Name=mRNA_A-nodosum_M_contig102.93.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1479bp|location=Sequence derived from alignment at A-nodosum_M_contig102:740334..741812- (Ascophyllum nodosum dioecious)
GTTTATGTAAGTATTCACTTTCTTTTAGGCTCTGCATATATCACCCTACA GCGAAGGCCAGCTCCATACACAGTAAGCTAGCGAATAGACGGTACACAAT GAAGGTGTGCCGTACTCTCGTACTTTCTGTACTCTTTACGGCTACTCCAA GTGCCTTCGTGCCTTCATGTGTTCGGTAAGCGCCGGTATAAAATCCTCCT GCAATTAAATTATGTTGACAAATGCGCGCGATGGCAGTCAGCCAGCTCTC TCTCAAAAACATGAACGAATATCCAAAACTTCCGAGTATCCACGCCATCT GGAGGGATTGTGTCGAGATGTTTGGTTGGGCTTCGCGTACAAATAGTCTA GTGGTTCACTTTTCGATGGTGGTCATACTCTTCCACACCTACGCATATAC TACGATGTTACGATGCAGGGAGAGGGCGCTCGGGAGTACAGCCCGCATTT CTCACGCTCATCAAACCACTCAAGTATTACGAATGGTGTACAAAAAGGTG TTCGTGGCCGGCGGCGCCAGAGGGGTTGGACGTGCCCTGATTGACAAGTT GGTGGCGCAGGGATCTGAAGTTGTGGCTTTGGTCCGCAGGGAAGATGCCA AGGAAGAGCTGGACGCGATCAATGGTAGGTTACGTTTGCATTGTTCCTCA TCTGAGAGTATCATAACCTTGACGGCGTACAGATGCAATCGATTTCCACC CTCGCACAGTACCCTCCCTCCTCACAGGAGACTGAAAAGCCTGCAAAACG TCGCTGTCGTGACAGGCGTAACGGCGGAGGTGTGCGACGCTTTGGATTTG AAGGGTGTAGAGAGTGTACTGGACGGCTGCGACGCCGCCATCTCTACTCT TGGAGGGACCCCGGATGGAGATGAGGAGAAACGAGTGGACTACACCGGCA ATCGCAACGTCATTGAATCTGCTGGAATTCTCGGCATCACCCGTCTGGTG CTAGTATCTAGCGTAGGCTGTGGCAGCAACCGTGAGGCCATCAGTGATAC TGTGTATCAGGTGAATCAGTCCGGCCGCTTTGTTTGTTTGACGTACTTGG GTATCTAGTAACAGTTAACGGCGTGGCATTCGTGCGGTTCTTCAAATCTG ATCTATTTTTGTATTTTGGTTTACCTTGTGCGCAGGTGCTGGAAAATGCG TTGAAGGCAAAAACTAAAGCAGAGAACATGTTATTAAAGTATTACACCAA TTCAGAGTGGACAATTATACGTCCTGGTGGGCTCAAGAATGATGCGGCAA CAAGAACTGCAATCCTGACCGAGGACAGCAAGGTAGCTGGGGTCATCAAT CGGGCAGATGTTGCTGATTTAGTTGTTCAAGCTCTGAATTCGCCCAGAAC CGTTAGAAAGATTTTAACAGCGATTGATCCGAGTGAAGATGGCCAACGCG ACGAGGGCCAACCAGAGCCATTCGAGCTTTGACGCTCCCGAATAATTATC CACATTTGTCTTGAGTTCATGGTATTTAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:740334..741812-

>mRNA_A-nodosum_M_contig102.93.1 ID=mRNA_A-nodosum_M_contig102.93.1|Name=mRNA_A-nodosum_M_contig102.93.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=825bp|location=Sequence derived from alignment at A-nodosum_M_contig102:740334..741812- (Ascophyllum nodosum dioecious)
ATGAAGGTGTGCCGTACTCTCGTACTTTCTGTACTCTTTACGGCTACTCC
AAGTGCCTTCGTGCCTTCATGTGTTCGGGAGAGGGCGCTCGGGAGTACAG
CCCGCATTTCTCACGCTCATCAAACCACTCAAGTATTACGAATGGTGTAC
AAAAAGGTGTTCGTGGCCGGCGGCGCCAGAGGGGTTGGACGTGCCCTGAT
TGACAAGTTGGTGGCGCAGGGATCTGAAGTTGTGGCTTTGGTCCGCAGGG
AAGATGCCAAGGAAGAGCTGGACGCGATCAATGGCGTAACGGCGGAGGTG
TGCGACGCTTTGGATTTGAAGGGTGTAGAGAGTGTACTGGACGGCTGCGA
CGCCGCCATCTCTACTCTTGGAGGGACCCCGGATGGAGATGAGGAGAAAC
GAGTGGACTACACCGGCAATCGCAACGTCATTGAATCTGCTGGAATTCTC
GGCATCACCCGTCTGGTGCTAGTATCTAGCGTAGGCTGTGGCAGCAACCG
TGAGGCCATCAGTGATACTGTGTATCAGGTGCTGGAAAATGCGTTGAAGG
CAAAAACTAAAGCAGAGAACATGTTATTAAAGTATTACACCAATTCAGAG
TGGACAATTATACGTCCTGGTGGGCTCAAGAATGATGCGGCAACAAGAAC
TGCAATCCTGACCGAGGACAGCAAGGTAGCTGGGGTCATCAATCGGGCAG
ATGTTGCTGATTTAGTTGTTCAAGCTCTGAATTCGCCCAGAACCGTTAGA
AAGATTTTAACAGCGATTGATCCGAGTGAAGATGGCCAACGCGACGAGGG
CCAACCAGAGCCATTCGAGCTTTGA
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