mRNA_A-nodosum_M_contig102.93.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI) HSP 1 Score: 371 bits (952), Expect = 2.540e-126 Identity = 200/270 (74.07%), Postives = 227/270 (84.07%), Query Frame = 3 Query: 114 TLVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPSEDGQRDEGQ-PEPFEL 920 +L LS+++ T ++FV C + G TAR + + Q+T LRM Y KVFVAGGA+GVGRA+IDKLV QGSEVVALVRREDAK+EL+AI GV+A VCDALDLKGVE+VLDGCDAAI+TLGG P+GDE KRVDY GNRNVIESAGILGITR+V+V+SVGCGS+REAISD VYQVLE ALKAKT AENMLLKYYTNSEWTIIRPGGLK+DAAT TAILTED+K AGVINRADVADL VQALNSP TVRKILTA+DP+ D + P F L Sbjct: 6 SLCLSLVYLGTVTSFVTPCAWNKVTG-TARSTISGQSTG-LRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSTVRKILTAVDPAVQSSYDSAEKPAAFAL 273
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA) HSP 1 Score: 275 bits (704), Expect = 7.360e-89 Identity = 152/264 (57.58%), Postives = 190/264 (71.97%), Query Frame = 3 Query: 132 LFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPSEDGQ-RDEGQPEPFEL 920 LF + SCV A + ++ +++ L M Y KVFVAGG+ GVGR ++++LV++G +VVA+VRREDA EEL+AI GVTA + DALDLKGVE LDGCDAAI+TLGG+ E RVDY GNRNVIESAGILG+TR++LV+SVGCG +R AISD VY LE AL AKTKAE ML KYYTN+ WTIIRPGGL+ T AILTE+ +AG+I RADVAD+VV+AL++ T +K+ TA+DPS D + E F L Sbjct: 4 LFVCVSALAAVSCVE--AFLAPMSVARTARSSSSLSMAYNKVFVAGGSSGVGREVVNQLVSKGKQVVAIVRREDALEELNAIEGVTAVMVDALDLKGVEGALDGCDAAITTLGGSSG---ENRVDYEGNRNVIESAGILGVTRVILVTSVGCGDSRGAISDQVYTSLEKALVAKTKAEKMLQKYYTNAFWTIIRPGGLQTAEGTGKAILTENKTIAGIIRRADVADVVVRALDNDGTHKKVFTAVDPSIPSSFGDASKAEAFPL 262
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S2V5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P0_9STRA) HSP 1 Score: 270 bits (689), Expect = 1.970e-86 Identity = 143/260 (55.00%), Postives = 186/260 (71.54%), Query Frame = 3 Query: 111 RTLVLSVLFTATPSAFVP---SCVRERALG---STARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDP 872 + L + + F +T AF+ SC R +T + S+ + L M YKKVFVAG A+GVGR ++++LVA+ EVVA VRRE+AK+EL + GVTA + DAL K VE +DGCDAA++TLG P ++ +VDY GN NVIE+AGILG+TR +LV+SVGCG ++EA+S Y+ LENALKAK KAE +L KYYTNS+WT+IRPGGL N AT A+LTE+ GVINRADVA LVV+AL+S +T RK+LTA+DP Sbjct: 14 KALAIKMKFISTALAFIMMVISCESFRTPSIQIATRKSSNLNANRAQLEMAYKKVFVAGAAKGVGRQIVEQLVAKDVEVVAFVRREEAKQELGGLKGVTAILGDALVQKDVEGAMDGCDAAVTTLGSAPTDEQRWKVDYDGNVNVIEAAGILGVTRCILVTSVGCGDSKEAVSPDAYEKLENALKAKEKAERVLTKYYTNSDWTVIRPGGLMNGEATSAAVLTENKMACGVINRADVASLVVKALDSQKTFRKVLTAVDP 273
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC) HSP 1 Score: 268 bits (684), Expect = 9.220e-86 Identity = 141/220 (64.09%), Postives = 172/220 (78.18%), Query Frame = 3 Query: 246 YKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGG-TPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPSEDGQRDEGQ 902 YKKVFVAGG RGVGR ++D+L+ QGSEVVALVR EDA +EL+AI GVTA DA + K VE+ +DGCDAAI+TLGG T DG KRVDY GN NVIESAGILG+TR++LV+SVGCGS++EA V++ L+ L AK KAEN+L+KYYTN WTIIRPGGLK++ AT AILTED++ G I+R DVA L ++ALNS T RK+LTAIDPS D +G+ Sbjct: 43 YKKVFVAGGTRGVGRCIVDQLLGQGSEVVALVRSEDALKELNAIEGVTAIRGDAFEQKAVENAMDGCDAAITTLGGATSDGG--KRVDYDGNSNVIESAGILGVTRVILVTSVGCGSSKEAAPPNVFEALKEVLTAKEKAENVLIKYYTNMNWTIIRPGGLKSEPATGKAILTEDTRAIGTIHREDVAALAIKALNSSNTERKVLTAIDPSIDSAVSDGK 260
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA) HSP 1 Score: 265 bits (678), Expect = 6.530e-85 Identity = 152/274 (55.47%), Postives = 191/274 (69.71%), Query Frame = 3 Query: 105 VCRTLVLSV-LFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPS-EDGQRDEGQPEPFEL 920 + R L+LS LF A AFVP+ +TA L YK VFVAGG++GVGR +IDKL+ QGS+VVALVR+E+ +L++I GVTA V DA D K VE+ +DGCDAAI+TLGG+ D R+DY GN NVIESAGILG+ R++LV+SVGCGS++EA + V++ L+ L AK KAEN+L+KYYTNS W+IIRPGGLK++ AT AILTED+K G I+R DVA LVV+ L SP+T RKILTAIDPS E + E F L Sbjct: 2 LARGLLLSTCLFLAGVQAFVPAPPLSVPPSNTA-----------LFATYKNVFVAGGSKGVGRLVIDKLLEQGSKVVALVRKEEVAADLNSIEGVTAIVGDAFDQKTVENAMDGCDAAITTLGGSTQ-DTGARIDYAGNSNVIESAGILGVQRIILVTSVGCGSSKEAAPEAVFEALKEVLLAKEKAENVLIKYYTNSNWSIIRPGGLKSEPATGNAILTEDNKTIGTIHREDVASLVVRCLESPKTERKILTAIDPSIESAVATGAEVEAFAL 263
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S0AIJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIJ9_9STRA) HSP 1 Score: 264 bits (674), Expect = 4.160e-84 Identity = 149/272 (54.78%), Postives = 194/272 (71.32%), Query Frame = 3 Query: 96 TMKVCRTLVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQV---LRMV--------YKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLG-GT-PDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDP 872 T++ L+ + + SAF P +GS + SH H T+ LRM Y KVFVAGG+RGVGRA++D L++ GSEVVALVR ++A+ EL A++GVT DA D K VE +DGCDAAI+T+G GT P G+ KRVDY GN NVIE+AGILG+TR+VLV+S+GCGS++EA +V++VL++ L AK +AEN+L+KYYTN WTI+RPGGLK++ AT TAILTE++ G I+R DVADLVVQALNS T RKIL+A+DP Sbjct: 4 TLRTALLFALAAIAASAVSAFAP-------IGSEST-SHRHATSPPATGLRMAGDAAPASKYSKVFVAGGSRGVGRAVVDGLLSAGSEVVALVRTDEAEAELSALDGVTVARGDAFDYKAVEGAMDGCDAAITTMGQGTDPVGENGKRVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIVRPGGLKSEPATGTAILTENNLAIGSIHREDVADLVVQALNSGNTERKILSAVDP 267
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA) HSP 1 Score: 261 bits (667), Expect = 5.230e-83 Identity = 139/255 (54.51%), Postives = 186/255 (72.94%), Query Frame = 3 Query: 117 LVLSVLFTATPSAFVP-SCVRERALGSTARISHA--HQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDP 872 L + L SAFVP S R S+A+ S++ + Y KVFVAGG++GVGR ++DKLV G+ VVALVR E+A EL+A++GVTA + DA D K VE +DGCDAA+STLGG + ++RVDY GN NVIE+AGILG+TR+VL++S+GCGS++EA +V++VL++ L AK +AEN+L+KYYTN+ WTIIRPGGLK++ AT AILTED+ G I+R DVA L +QAL SP+T +KIL+A+DP Sbjct: 7 LAAAALLAGVCSAFVPASTFVSRTTASSAKKSYSSLYMVEGQGGQTYNKVFVAGGSKGVGRLVVDKLVGSGTGVVALVRSEEAAAELNALDGVTAVIGDAFDYKAVEGAMDGCDAAMSTLGGGTVEEGKQRVDYEGNSNVIEAAGILGVTRVVLITSIGCGSSKEAAPPSVFEVLKDVLSAKERAENILIKYYTNTNWTIIRPGGLKSEPATGKAILTEDNMAIGSIHREDVAALAIQALTSPKTKQKILSAVDP 261
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A6U3NUE1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUE1_9STRA) HSP 1 Score: 258 bits (658), Expect = 1.120e-81 Identity = 138/257 (53.70%), Postives = 185/257 (71.98%), Query Frame = 3 Query: 111 RTLVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMV--YKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPS 875 R L+LS L S P+ V R + ST + A + L + YKKVFVAGG++GVGR ++DKL+ GSEVVALVR ++A +EL A+ GVTA + DA + K VE +DGCDAAI+TLG G++ KRVDY GN NVIE+AGILG+TR++L++S+GCGS++EA +V++VL++ L AK +AEN+L+KYYTN WTIIRPGGLK++ T AILTED+ G I+R DVA L V+AL S +T RK+L+A+D S Sbjct: 5 RLLILSALVAIVASFAPPAFVSTRTI-STIKDGVASSASSSLTSLDAYKKVFVAGGSKGVGRHIVDKLIEDGSEVVALVRSQEAIDELSALEGVTAILGDAFEYKNVEGAMDGCDAAITTLGQGTAGEDGKRVDYEGNSNVIEAAGILGVTRVILITSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIIRPGGLKSEPGTGEAILTEDAMAIGSIHREDVAALAVKALTSSKTERKVLSAVDQS 260
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: B8C036_THAPS (NAD(P)-bd_dom domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C036_THAPS) HSP 1 Score: 256 bits (654), Expect = 4.240e-81 Identity = 141/264 (53.41%), Postives = 188/264 (71.21%), Query Frame = 3 Query: 117 LVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDE-EKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPS-EDGQRDEGQ 902 L+L+ A SAF P+ +R + + S + Q YKKVFVAGG++GVGR ++DKLV+ G+EVVALVR ++A +EL A++GVTA DA+D K VE +DGCDAAI+TLGG + E EK VDY GN NVIE+AGILG+TR+VLV+S+GCGS++EA +VY+VL++ L K KAE +L +YYTN WTI+RPGGL ++ T A+LTED+ G I+R DVADLVV+AL+S T +KIL+A+DPS E EG+ Sbjct: 6 LLLATALAAASSAFAPTAFVQRVAPAPTQRSALYMV-QGQGDSYKKVFVAGGSKGVGRLVVDKLVSNGAEVVALVRSDEAVDELSALDGVTAIKGDAMDYKTVEGAMDGCDAAITTLGGGHNVAEGEKYVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEATPPSVYEVLKDVLVQKEKAEKVLTRYYTNMNWTIVRPGGLVSEPPTGKAVLTEDTMAIGSIHRGDVADLVVKALSSKNTEKKILSAVDPSIESASNPEGK 268
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Match: A0A7S2HK64_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HK64_9STRA) HSP 1 Score: 255 bits (651), Expect = 1.410e-80 Identity = 139/259 (53.67%), Postives = 186/259 (71.81%), Query Frame = 3 Query: 111 RTLVLSVLFTATPSA-FVPSCVRERALGS---TARISHAHQTTQVLRMVYKKVFVAGGARGVGRALIDKLVAQGSEVVALVRREDAKEELDAINGVTAEVCDALDLKGVESVLDGCDAAISTLGGTPDGDEEKRVDYTGNRNVIESAGILGITRLVLVSSVGCGSNREAISDTVYQVLENALKAKTKAENMLLKYYTNSEWTIIRPGGLKNDAATRTAILTEDSKVAGVINRADVADLVVQALNSPRTVRKILTAIDPS 875 R L LS L A S V S LGS + + S + T YKKVFVAGG++GVGR ++DKL+ GSEVVALVR ++A +EL AI+GVT + DA + K VE+ +DGCDAAI+TLG ++ KRVDY GN NVIE+AGILG+TR++LV+S+GCGS++EA +V++VL++ L AK +AEN+L+KYYTN+ WTI+RPGGLK++ AT AILTED+ G I+R DVA L+V+AL S +T RK+L+A+D S Sbjct: 5 RLLALSALGAALFSCQLVASFAPPAFLGSRRTSTQASGSSSATTTSLDAYKKVFVAGGSKGVGRLIVDKLIEDGSEVVALVRSQEAVDELGAIDGVTPILGDAFEYKNVENAMDGCDAAITTLGQGSATEDGKRVDYEGNSNVIEAAGILGVTRVILVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNTNWTIVRPGGLKSEPATGEAILTEDAMAIGSIHREDVASLIVKALTSSKTERKVLSAVDQS 263 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig102.93.1 >prot_A-nodosum_M_contig102.93.1 ID=prot_A-nodosum_M_contig102.93.1|Name=mRNA_A-nodosum_M_contig102.93.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=275bp MKVCRTLVLSVLFTATPSAFVPSCVRERALGSTARISHAHQTTQVLRMVYback to top mRNA from alignment at A-nodosum_M_contig102:740334..741812- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig102.93.1 ID=mRNA_A-nodosum_M_contig102.93.1|Name=mRNA_A-nodosum_M_contig102.93.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1479bp|location=Sequence derived from alignment at A-nodosum_M_contig102:740334..741812- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig102:740334..741812- >mRNA_A-nodosum_M_contig102.93.1 ID=mRNA_A-nodosum_M_contig102.93.1|Name=mRNA_A-nodosum_M_contig102.93.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=825bp|location=Sequence derived from alignment at A-nodosum_M_contig102:740334..741812- (Ascophyllum nodosum dioecious)back to top |