mRNA_A-nodosum_M_contig102.71.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.71.1
Unique NamemRNA_A-nodosum_M_contig102.71.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:393385..393999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size334
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866380.077043-UTR-A-nodosum_M_contig102:393384..3933891680866380.077043-UTR-A-nodosum_M_contig102:393384..393389Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 393385..393389 +
1680866380.1112843-UTR-A-nodosum_M_contig102:393964..3939991680866380.1112843-UTR-A-nodosum_M_contig102:393964..393999Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 393965..393999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866380.0863652-CDS-A-nodosum_M_contig102:393389..3934221680866380.0863652-CDS-A-nodosum_M_contig102:393389..393422Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 393390..393422 +
1680866380.0985773-CDS-A-nodosum_M_contig102:393703..3939641680866380.0985773-CDS-A-nodosum_M_contig102:393703..393964Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 393704..393964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.71.1prot_A-nodosum_M_contig102.71.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 393390..393964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.71.1

>prot_A-nodosum_M_contig102.71.1 ID=prot_A-nodosum_M_contig102.71.1|Name=mRNA_A-nodosum_M_contig102.71.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MLPNFRIDVEKKVSRSPAAVEPAIFAQNPTSRTDTTNAREAAGNDVNLIT
IYARALGILAPQQHVMSFLRALLTRYIQQGILSPSYFHMAAAFERPF*
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mRNA from alignment at A-nodosum_M_contig102:393385..393999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.71.1 ID=mRNA_A-nodosum_M_contig102.71.1|Name=mRNA_A-nodosum_M_contig102.71.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at A-nodosum_M_contig102:393385..393999+ (Ascophyllum nodosum dioecious)
ACCCGATGCTGCCAAACTTTCGGATCGACGTGGAAAAGGTGAGAAATTGA
GATAAAAAAAAACTCGTGAGAAAAAACTACCATATGAATAGAGGTTCTGC
AAGTTAACTTGTGCTACTTGGCACTTGGGGGTCGAAGGACACCTTTGTTT
TCCTCCTCCGGTTTTAAGCAAAATAATATTTCACCTGACTTTGGTTGCAC
AGGTAGCTCGTGGATTGTGCCACTTAAAACCAATCTAGGTGTTTCCACGC
TCGTTCTCGACCCTCTGAAAGACAGGCAAAAAAAACAACACGCATGTTCA
AATATCTTACTGGCAGCAGAAAGTATCAAGATCTCCAGCAGCAGTCGAAC
CAGCAATCTTTGCCCAAAACCCCACCTCACGCACGGATACGACAAACGCT
CGAGAAGCTGCTGGTAATGATGTCAATCTGATCACAATCTATGCTCGTGC
TCTTGGTATACTCGCACCGCAGCAACATGTCATGTCCTTCCTCCGCGCAC
TCCTCACGAGGTATATACAGCAGGGCATACTCTCACCTTCGTATTTCCAT
ATGGCGGCGGCATTTGAGAGGCCATTTTGAGGGGCATTGAAAAAAAACAA
AGGGTTCCCAGTAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:393385..393999+

>mRNA_A-nodosum_M_contig102.71.1 ID=mRNA_A-nodosum_M_contig102.71.1|Name=mRNA_A-nodosum_M_contig102.71.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig102:393385..393999+ (Ascophyllum nodosum dioecious)
ATGCTGCCAAACTTTCGGATCGACGTGGAAAAGAAAGTATCAAGATCTCC
AGCAGCAGTCGAACCAGCAATCTTTGCCCAAAACCCCACCTCACGCACGG
ATACGACAAACGCTCGAGAAGCTGCTGGTAATGATGTCAATCTGATCACA
ATCTATGCTCGTGCTCTTGGTATACTCGCACCGCAGCAACATGTCATGTC
CTTCCTCCGCGCACTCCTCACGAGGTATATACAGCAGGGCATACTCTCAC
CTTCGTATTTCCATATGGCGGCGGCATTTGAGAGGCCATTTTGA
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