mRNA_A-nodosum_M_contig102.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.6.1
Unique NamemRNA_A-nodosum_M_contig102.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:106667..107659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size176
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866379.8517644-CDS-A-nodosum_M_contig102:106666..1067431680866379.8517644-CDS-A-nodosum_M_contig102:106666..106743Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 106667..106743 -
1680866379.8609278-CDS-A-nodosum_M_contig102:107562..1076591680866379.8609278-CDS-A-nodosum_M_contig102:107562..107659Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 107563..107659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.6.1prot_A-nodosum_M_contig102.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 106667..107659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.6.1

>prot_A-nodosum_M_contig102.6.1 ID=prot_A-nodosum_M_contig102.6.1|Name=mRNA_A-nodosum_M_contig102.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=58bp
MQVDRARRVHGRPGVRLVVHILVHLEQMLRDHGVFPNSSIGKARRDINVT
SGLISPDQ
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mRNA from alignment at A-nodosum_M_contig102:106667..107659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.6.1 ID=mRNA_A-nodosum_M_contig102.6.1|Name=mRNA_A-nodosum_M_contig102.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=993bp|location=Sequence derived from alignment at A-nodosum_M_contig102:106667..107659- (Ascophyllum nodosum dioecious)
ATGCAGGTTGATCGCGCTCGGCGTGTCCATGGGCGACCGGGTGTCAGGCT
GGTGGTTCATATACTTGTTCACCTGGAGCAGATGCTGCGCGATCATGGTG
AGGTACTATTAAAATAGTCGCCCGAGTGGTCTAGTAGTTAACCTGCACAC
CTGCTAGTGCGGAAGTCGTGAGTTCGATTCTTACCAAAGTAGGATTTGTG
TTCTTTCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTGTA
AGGGTGCTGAACTTGCATCGCGATAAAAAATTGTAAGGCGTGAACCGGGG
AGAGATTGGAAGATCCTTTGTGACCACAGGCAGGATGGTAATGATGAGGT
CCATCGGCTATAAGTGAGATGAAAGAAAAAGAAGAAGAAAAAAAGTCCCA
AACTTCGTCAAGTCAAGGAGCTTTCCGCGTGGGTCTACGATCGGGAGTGA
TGTAGCCCGCCCTGTTACCAAATATATTTGCATCCTCTAAATATGCGGGT
GCATTAACGCGTACTGCGCCGTGATTTTTGTTTCCATCTGCTGAATGGAG
TGCGCTCAACCTCTTTTGTTTCATGTCGGCGCCACATCATCAGTCTGTAC
AAGGCTATTATAATAAAATGCTGTTATGTTGCGTGTTCACGTGATCGTTG
CCAAGTTGAGCTCACACGTTTTCCACGCGTAAGGTATGTGTTCTTCTTCA
GCCACTTTAAAGCCTGGGGCTCACACGTGATAGCTGGTCTTTGAACTATA
ATAGGCCATCTTATGGTACGACGCTCCGCGGGCGTGTAGAAATTGGCGAC
AATCGGAGATAAAACAACAATTCAAAATAGCGCGCGGTAAATCGTGTTCA
CGGCAACATGGTAAACGCTCAAAGGTTGAAAACACCATTTACTTTGCCTG
CTGCCGTCCCTTCAAGGTGTTTTTCCAAACTCTAGCATCGGGAAGGCGAG
ACGAGACATCAACGTCACAAGCGGTCTAATAAGTCCGGATCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:106667..107659-

>mRNA_A-nodosum_M_contig102.6.1 ID=mRNA_A-nodosum_M_contig102.6.1|Name=mRNA_A-nodosum_M_contig102.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig102:106667..107659- (Ascophyllum nodosum dioecious)
ATGCAGGTTGATCGCGCTCGGCGTGTCCATGGGCGACCGGGTGTCAGGCT
GGTGGTTCATATACTTGTTCACCTGGAGCAGATGCTGCGCGATCATGGTG
TTTTTCCAAACTCTAGCATCGGGAAGGCGAGACGAGACATCAACGTCACA
AGCGGTCTAATAAGTCCGGATCAG
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