mRNA_A-nodosum_M_contig102.56.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.56.1
Unique NamemRNA_A-nodosum_M_contig102.56.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:272033..274528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1927
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004800.1
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866383.0989096-UTR-A-nodosum_M_contig102:272032..2729311680866383.0989096-UTR-A-nodosum_M_contig102:272032..272931Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 272033..272931 -
1680866383.1439605-UTR-A-nodosum_M_contig102:274043..2745281680866383.1439605-UTR-A-nodosum_M_contig102:274043..274528Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 274044..274528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866383.1144378-CDS-A-nodosum_M_contig102:272931..2730961680866383.1144378-CDS-A-nodosum_M_contig102:272931..273096Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 272932..273096 -
1680866383.1238549-CDS-A-nodosum_M_contig102:273436..2736851680866383.1238549-CDS-A-nodosum_M_contig102:273436..273685Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 273437..273685 -
1680866383.1342216-CDS-A-nodosum_M_contig102:273914..2740431680866383.1342216-CDS-A-nodosum_M_contig102:273914..274043Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 273915..274043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.56.1prot_A-nodosum_M_contig102.56.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 272932..274043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.56.1

>prot_A-nodosum_M_contig102.56.1 ID=prot_A-nodosum_M_contig102.56.1|Name=mRNA_A-nodosum_M_contig102.56.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp
MSVEDPISGRTYSYSHSHGVSTGKARLTIDMCNHGLGPRYCRQAGKAGAD
SLQSTSTGESNVQAPKESERQVEYEEGQHLEESADNAAFDVDWVNELNGI
PDPTNDGSTTSSFEDLENSIDVVNEEKELAIYENDDPTDAVLAFCAKNMP
DEVADCVDDVLASVQDTLTVTTEDVKVIAE*
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mRNA from alignment at A-nodosum_M_contig102:272033..274528-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.56.1 ID=mRNA_A-nodosum_M_contig102.56.1|Name=mRNA_A-nodosum_M_contig102.56.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2496bp|location=Sequence derived from alignment at A-nodosum_M_contig102:272033..274528- (Ascophyllum nodosum dioecious)
TTGTCATGACTCTTGTGTTCACGGCTATCGTTCAGGACTTAAAGAGATGT
CTGCGATACTAGTAACGCGGATTCCCAAGGTTCGTAGGATCCGTGATTCA
GAAATCATAGGCAGCAGGGGAACTGTTCCTTTCTGCATCGGTAGCGAACT
ACCTCAGTTGGCAACGTTGAATTGGTGTTTACGGGGTGCCTCTGTAGTAT
TTATATTTTTAATCAACGGGGGAAAAAATGGTCATGATGAACCTCAGTTT
TGGTGTGACTGACAAGCGAAGCTTCGAATTACTTCGGGACTTCGTGCCAG
TGTTTACAGCCAAAAAGATTGGTCACGGATGAACAGCAGTTTTGCTGTGG
TCGGTTTCGTCTGATAAATGATGCTTCGAAGTACTTCGAACTCTGTAGAA
GTATTTACCCATCCAGTCTAGACTCTCTGAAAAACGAAATGGTGCATGTA
GGACTTTTGAAGTGATCCAACATGAAGACGAAATCATGTCCGTTGAAGAT
CCCATTTCAGGTAGAACATATTCTTATTCTCACAGTCACGGCGTTTCAAC
AGGGAAAGCTCGCCTGACTATAGATATGTGCAACCACGGCTTAGGCCCTC
GTTACTGTCGCCAGGTAACAAGCGTCCGAGCAGTGACATAAGCGTGTTAA
TGTCCAACAGAAAGTTTCGACGGAAAGAACACAGGACAGCGTGTTATAGG
TAGCAAGATCGACATATTACATGCCCGTGTACTTCAGATTGCAGTATATG
GGGTCTCATTGCATCTGAGCGATCCCATAAAAAAACGGAAGACACGCCAC
GGAATAATACCCTTTTGCAAACTCCTCCGTAATGACAAGAAAGGCTGGAA
AAGCTGGAGCAGATTCCTTACAAAGTACTTCCACCGGGGAGAGTAATGTG
CAAGCACCGAAAGAGTCTGAGAGGCAGGTAGAGTATGAAGAGGGTCAGCA
TCTCGAAGAAAGTGCCGACAACGCCGCATTTGACGTGGACTGGGTAAATG
AACTTAACGGCATACCAGATCCAACCAATGACGGTTCAACTACTTCGAGC
TTTGAGGATCTGGAAAACTCTATCGACGTGGTGAACGAAGAGGTGACGGC
TTGAACATTTGGGCTTATTCCATATCTTACGATCCTATCTTACGATCCTA
TCTTACGATCCTATCTTACGATCCTATCTTACGATCCTATCTTACGATCC
TATCTTACGATCCTATCTTACGATCCTATCTTATGATCCTATTTTGGCAT
TTTCGCGCGCTGCGCAAGTTGGCTTTCCCTCTTTTGCCGGCTCCTGTAGA
TATAATATTCCTTCGTCGATATCAGCGGAATTAAGTTTTTGCAACGATAT
CTTACTTGAATCATGTCCACTTGAATTTCATCTCCAGGGAGACCTTGCAA
TTCTTCTCCCTATCACGATCGACGGTGAGCAGAAAGAGCTCGCAATTTAC
GAGAACGACGATCCTACGGATGCTGTGCTCGCATTCTGCGCGAAAAACAT
GCCCGATGAGGTTGCCGACTGCGTGGACGACGTCCTTGCCTCGGTCCAAG
ACACGCTTACCGTAACTACGGAGGACGTCAAAGTTATCGCGGAATAAAAA
ATCAGGTTTATTTAACTCTTATAGCAACACCTTTTCTCGAGAAAATCGTG
ACACTCGATGATAACGTATTAGTTACTATCTTGTGACGTTTTCATACATC
GAGAGGAAAGTGAGCAAACGATTGAAGGGAAGGACACGCAAGAAGACATC
ATGTAACACGTGGGAGGCATCGGCATGATTTCTTGTGACTTTCTGTTGCG
GATACTGCACTGACATTTTTGCCTTAGCCGTAAGGCTTAAAAGTACCCTC
CTACGTCGAAGCCTCCTTGACTTCTACAGGCAGGGCCTTGCTTCTTAAGC
TACGAATGTCAGCAGCAACTTCCTGACCAATTGGTAGAATCGGTTCATGT
AGACGAAATAATATATAACGGAGGGAGTGTAATGCTATCTCCATAAGACC
GCCGGGGGAAACTATTGCTAACTTTTGATCCAATTCAACTTTTCTAACAC
ACATGGCTGGTGTTAGGTGATGCATCCTATCAACGGATACTACGATATGA
CGTTAGTATACAGTGCCTCTATGGGCTTCTCCCCAGTACTACTCTAGACG
ACGCTGTTGAATCATGGATACTTCGGGAACCAATCCAGCAACCGATTACC
GGAGTTCATCTTGTTTCCTTTCTTTAACTAAGAGAGTCGAGTTGGCAAAC
CATGAACCAAAGCGCTTTTGTTTCAAGCGAAACGAATGGAACCACATTCA
GAGCTGTAACGTTAGTAAATGAGAAAGCCTCGCATTTTCTTGAATCATTG
GTCATGTTTTTTGTCAGATATTACGCAGTATTTAGTTTGTTCATCGCCCC
ACACGATAAGATTCACCCTACTGTGTCCACCAACAGATAAGGTGGCGCAA
AACCGGTCGATTTTCAACACATTGAGTTGAAGACTTTTTTCGTTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:272033..274528-

>mRNA_A-nodosum_M_contig102.56.1 ID=mRNA_A-nodosum_M_contig102.56.1|Name=mRNA_A-nodosum_M_contig102.56.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig102:272033..274528- (Ascophyllum nodosum dioecious)
ATGTCCGTTGAAGATCCCATTTCAGGTAGAACATATTCTTATTCTCACAG
TCACGGCGTTTCAACAGGGAAAGCTCGCCTGACTATAGATATGTGCAACC
ACGGCTTAGGCCCTCGTTACTGTCGCCAGGCTGGAAAAGCTGGAGCAGAT
TCCTTACAAAGTACTTCCACCGGGGAGAGTAATGTGCAAGCACCGAAAGA
GTCTGAGAGGCAGGTAGAGTATGAAGAGGGTCAGCATCTCGAAGAAAGTG
CCGACAACGCCGCATTTGACGTGGACTGGGTAAATGAACTTAACGGCATA
CCAGATCCAACCAATGACGGTTCAACTACTTCGAGCTTTGAGGATCTGGA
AAACTCTATCGACGTGGTGAACGAAGAGAAAGAGCTCGCAATTTACGAGA
ACGACGATCCTACGGATGCTGTGCTCGCATTCTGCGCGAAAAACATGCCC
GATGAGGTTGCCGACTGCGTGGACGACGTCCTTGCCTCGGTCCAAGACAC
GCTTACCGTAACTACGGAGGACGTCAAAGTTATCGCGGAATAA
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