mRNA_A-nodosum_M_contig102.24.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.24.1
Unique NamemRNA_A-nodosum_M_contig102.24.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:138457..139930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size681
Hectar predicted targeting categoryother localisation
Exons2
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866380.0026224-CDS-A-nodosum_M_contig102:138456..1386121680866380.0026224-CDS-A-nodosum_M_contig102:138456..138612Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 138457..138612 +
1680866380.0118215-CDS-A-nodosum_M_contig102:139405..1399301680866380.0118215-CDS-A-nodosum_M_contig102:139405..139930Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 139406..139930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.24.1prot_A-nodosum_M_contig102.24.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 138457..139930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.24.1

>prot_A-nodosum_M_contig102.24.1 ID=prot_A-nodosum_M_contig102.24.1|Name=mRNA_A-nodosum_M_contig102.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=227bp
AVAVAAETGTVAVKIGASNSGERANDVTAQLAEAIKAKEALEEKLTEFAK
YTGMKEKEMMTMKERMAAMEESLRVAKNELATIRAAQEGGGARNDGLVKD
LRTIVKELEAVIHDRGEDGHEVLSDLMAALAARQKETTEERLRANEVLTC
TLGAKREMESALSSAYETELRLRFRLEEMTGDVVRLATGRPEIVENLKDK
HEKINFLEDRLGCAEKNLRIAKGQTRK
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mRNA from alignment at A-nodosum_M_contig102:138457..139930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.24.1 ID=mRNA_A-nodosum_M_contig102.24.1|Name=mRNA_A-nodosum_M_contig102.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1474bp|location=Sequence derived from alignment at A-nodosum_M_contig102:138457..139930+ (Ascophyllum nodosum dioecious)
GCTGTTGCTGTTGCTGCAGAGACAGGTACGGTCGCGGTTAAGATCGGCGC
ATCCAACAGTGGCGAAAGAGCTAATGATGTTACTGCCCAGCTGGCAGAAG
CTATCAAGGCGAAGGAGGCTTTGGAGGAAAAGCTTACGGAATTTGCCAAG
TATACGGTGAGTTTGCCTGCCGTCGTGGTGTCTTGCAAGGAGAGCTTCTA
GGTTCCTTCGCCATTATGACTTGGGAGATTATTGCGTTGTTGGATGCTTT
ATGGCCTAGCATCGCTGAGAGAGGGAAGGGAGTATCAGTCGCTCTTCCCC
CTTTGACAACGCTATTAACGGAACATCTCTAGGACGCCGCGAGTTCAGTG
CCTGGAGACCCTACATTATCAAGACTCTATCGATTTCTCCGCTGGTCGAT
AAGCTTTGGTTTTCTCTATTAGTACCGTAGCAGACATGAAAGAGAAAATA
TATTTTATTTTTAGAACGCGCCTGCTCTGATGTTCACATATCCTCTTGCA
GCGCGACGATGAACCGCTCATATACGTGGTATTTACAGCAATAACCTGGC
CTTCCCGGCGCTAATCTTCGAATGATGACATATAAAATACCTTAGATATA
TAACTGTCACCTTGTTGTACATGCGTCGCGACCTCTAGCTCTATGCCCCC
CCCCCGCAAAGGGGCTGCTATTCCTCGTTCTAGCTTGTTAAAAAAGAAAT
GTTCGTGCGAGAGGAGAGATCCAACCTTAAAAATGGAACCCAAACTAACT
CCCATGAAACTGGATTTGGTTTGATTTTTCGATCTCCATGTGTTTCGGTT
ATTTAGGGGAGGGGGGTGTTCCAACCAAAAAGTATTCGTTTCGGGTCCAA
GGCTAACCAATCTTCATAGTTTTAGTCTCGCAGAAACTTCAGCCTACTAA
CGCTTTCCGCACCGTACAACGGGCTTCACGATACCATTGGCAAATTTAGG
GCATGAAGGAGAAGGAGATGATGACGATGAAGGAGCGTATGGCTGCCATG
GAGGAAAGCCTGCGCGTAGCAAAAAACGAGCTCGCCACCATCCGAGCTGC
CCAAGAGGGAGGGGGGGCGAGAAACGACGGTCTGGTCAAGGACCTAAGGA
CCATCGTGAAGGAGCTTGAAGCGGTGATTCACGACCGTGGGGAGGACGGT
CATGAAGTGCTTTCGGATCTAATGGCAGCTTTGGCCGCAAGGCAGAAAGA
GACAACAGAGGAACGTCTAAGGGCCAACGAGGTCCTAACTTGCACGCTTG
GTGCAAAGCGGGAAATGGAAAGCGCCCTCAGCTCGGCCTATGAGACGGAG
CTGAGACTGCGCTTCCGTCTCGAGGAGATGACCGGCGACGTGGTAAGACT
CGCGACGGGAAGGCCAGAAATTGTGGAAAATCTCAAAGATAAACACGAGA
AAATAAATTTCCTCGAGGACCGCCTCGGGTGCGCGGAGAAGAACCTTCGC
ATAGCGAAGGGTCAAACTCGTAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:138457..139930+

>mRNA_A-nodosum_M_contig102.24.1 ID=mRNA_A-nodosum_M_contig102.24.1|Name=mRNA_A-nodosum_M_contig102.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=681bp|location=Sequence derived from alignment at A-nodosum_M_contig102:138457..139930+ (Ascophyllum nodosum dioecious)
GCTGTTGCTGTTGCTGCAGAGACAGGTACGGTCGCGGTTAAGATCGGCGC
ATCCAACAGTGGCGAAAGAGCTAATGATGTTACTGCCCAGCTGGCAGAAG
CTATCAAGGCGAAGGAGGCTTTGGAGGAAAAGCTTACGGAATTTGCCAAG
TATACGGGCATGAAGGAGAAGGAGATGATGACGATGAAGGAGCGTATGGC
TGCCATGGAGGAAAGCCTGCGCGTAGCAAAAAACGAGCTCGCCACCATCC
GAGCTGCCCAAGAGGGAGGGGGGGCGAGAAACGACGGTCTGGTCAAGGAC
CTAAGGACCATCGTGAAGGAGCTTGAAGCGGTGATTCACGACCGTGGGGA
GGACGGTCATGAAGTGCTTTCGGATCTAATGGCAGCTTTGGCCGCAAGGC
AGAAAGAGACAACAGAGGAACGTCTAAGGGCCAACGAGGTCCTAACTTGC
ACGCTTGGTGCAAAGCGGGAAATGGAAAGCGCCCTCAGCTCGGCCTATGA
GACGGAGCTGAGACTGCGCTTCCGTCTCGAGGAGATGACCGGCGACGTGG
TAAGACTCGCGACGGGAAGGCCAGAAATTGTGGAAAATCTCAAAGATAAA
CACGAGAAAATAAATTTCCTCGAGGACCGCCTCGGGTGCGCGGAGAAGAA
CCTTCGCATAGCGAAGGGTCAAACTCGTAAA
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