mRNA_A-nodosum_M_contig102.21.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.21.2
Unique NamemRNA_A-nodosum_M_contig102.21.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.21.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:135942..136368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866379.9511623-UTR-A-nodosum_M_contig102:135941..1359561680866379.9511623-UTR-A-nodosum_M_contig102:135941..135956Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 135942..135956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866379.9609995-CDS-A-nodosum_M_contig102:135956..1360211680866379.9609995-CDS-A-nodosum_M_contig102:135956..136021Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 135957..136021 +
1680866379.9707255-CDS-A-nodosum_M_contig102:136292..1363681680866379.9707255-CDS-A-nodosum_M_contig102:136292..136368Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 136293..136368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.21.2prot_A-nodosum_M_contig102.21.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 135957..136368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.21.2

>prot_A-nodosum_M_contig102.21.2 ID=prot_A-nodosum_M_contig102.21.2|Name=mRNA_A-nodosum_M_contig102.21.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=47bp
MEMNRLTRDGTAEPVSRDQILRQLRAVILYPITRAKRSSDSIAFSTK
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mRNA from alignment at A-nodosum_M_contig102:135942..136368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.21.2 ID=mRNA_A-nodosum_M_contig102.21.2|Name=mRNA_A-nodosum_M_contig102.21.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=427bp|location=Sequence derived from alignment at A-nodosum_M_contig102:135942..136368+ (Ascophyllum nodosum dioecious)
GATTCAGCCTCGAGTATGGAGATGAACAGGCTGACGCGGGACGGGACGGC
TGAACCCGTCTCGCGAGACCAAATTCTCAGGCACGCACGGGGACAGGGGA
ATATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTAC
TCGGTTGATCCATACTCTGCTATATGTGATGACCATACATACATATGTTA
ATATTAGCTTTTTGAGCGCAATGTCATCATGTAATATCGCAAGGAGACTA
AGTGCGGGCAGTTTCCACAGCCTTTAGCTGCCAGAGGTAAGAACTCTGAC
CGATCTACTGTACTAGCTGACTGACAAATTACGTGTGTGAAAAATCTGCA
GACAACTCCGGGCGGTAATCCTTTACCCGATAACAAGGGCAAAACGTTCT
TCAGATTCGATCGCATTTTCGACGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:135942..136368+

>mRNA_A-nodosum_M_contig102.21.2 ID=mRNA_A-nodosum_M_contig102.21.2|Name=mRNA_A-nodosum_M_contig102.21.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=141bp|location=Sequence derived from alignment at A-nodosum_M_contig102:135942..136368+ (Ascophyllum nodosum dioecious)
ATGGAGATGAACAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCGCG
AGACCAAATTCTCAGACAACTCCGGGCGGTAATCCTTTACCCGATAACAA
GGGCAAAACGTTCTTCAGATTCGATCGCATTTTCGACGAAG
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