mRNA_A-nodosum_M_contig102.118.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.118.1
Unique NamemRNA_A-nodosum_M_contig102.118.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:825314..825806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866380.1450655-UTR-A-nodosum_M_contig102:825313..8253171680866380.1450655-UTR-A-nodosum_M_contig102:825313..825317Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 825314..825317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866380.1533806-CDS-A-nodosum_M_contig102:825317..8255281680866380.1533806-CDS-A-nodosum_M_contig102:825317..825528Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 825318..825528 +
1680866380.1633985-CDS-A-nodosum_M_contig102:825750..8258061680866380.1633985-CDS-A-nodosum_M_contig102:825750..825806Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 825751..825806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.118.1prot_A-nodosum_M_contig102.118.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 825318..825806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.118.1

>prot_A-nodosum_M_contig102.118.1 ID=prot_A-nodosum_M_contig102.118.1|Name=mRNA_A-nodosum_M_contig102.118.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
MSDSLCQQTETDGTATPARGVVQRSTHPREHTGSRCGEGIACKVLQGMYA
PTCVQLRGRCASGCAARGRQGDTVAGWPSFSGAGVGIA*
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mRNA from alignment at A-nodosum_M_contig102:825314..825806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.118.1 ID=mRNA_A-nodosum_M_contig102.118.1|Name=mRNA_A-nodosum_M_contig102.118.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=493bp|location=Sequence derived from alignment at A-nodosum_M_contig102:825314..825806+ (Ascophyllum nodosum dioecious)
CTTTATGAGTGACTCTCTGTGTCAGCAGACAGAAACTGATGGAACTGCAA
CTCCTGCTCGAGGCGTTGTTCAACGTTCGACGCACCCGAGAGAGCACACG
GGATCCCGGTGCGGAGAAGGCATCGCTTGCAAAGTTCTGCAAGGGATGTA
CGCACCAACTTGTGTTCAGCTGCGAGGTCGGTGTGCTTCCGGCTGTGCCG
CCAGAGGACGTCAAGGTGAGCCCTCTCACGCCACGCACGTACACCCTATA
TGAAATTTGCACCTGCGCCGTGTACGTGCGCACCTGTGTGGAAGAATCGC
CACACCGGCACTTCCATTTTCACGGCCACCCGCAACACATTTTATAAGCG
CTTGTCACCAAATACACCTTCCAACTTGTAGGTCAGCCCTCCTGCAAGCG
TTTAGTACTGAAATCGCTGCGTCTTTTGTTGCTGCAGGAGACACGGTGGC
TGGATGGCCAAGCTTCTCAGGCGCTGGCGTCGGCATTGCGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:825314..825806+

>mRNA_A-nodosum_M_contig102.118.1 ID=mRNA_A-nodosum_M_contig102.118.1|Name=mRNA_A-nodosum_M_contig102.118.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig102:825314..825806+ (Ascophyllum nodosum dioecious)
ATGAGTGACTCTCTGTGTCAGCAGACAGAAACTGATGGAACTGCAACTCC
TGCTCGAGGCGTTGTTCAACGTTCGACGCACCCGAGAGAGCACACGGGAT
CCCGGTGCGGAGAAGGCATCGCTTGCAAAGTTCTGCAAGGGATGTACGCA
CCAACTTGTGTTCAGCTGCGAGGTCGGTGTGCTTCCGGCTGTGCCGCCAG
AGGACGTCAAGGAGACACGGTGGCTGGATGGCCAAGCTTCTCAGGCGCTG
GCGTCGGCATTGCGTGA
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