mRNA_A-nodosum_M_contig1019.8.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 617 bits (1592), Expect = 9.250e-204 Identity = 306/508 (60.24%), Postives = 393/508 (77.36%), Query Frame = 1 Query: 1222 SVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHADILTKALRGANFRYHRKHLINLA 2745 +VAGV +SVYR+GWE+AM+ EFDGH+ T F VD P GR+PVSSKW F +KT+K+GKI KFKARL+ +GF+Q+ +VDY HSSSPC SSASI+L+LA+ANEK L H+DV Q + A LDE+V+++LP GCGE+S VK+E AI+GLKQSG + G+ ADTL+ N E CKADP +FRK+ D VV D +L+ S +D + LLASLNK FPT +LGE +D C +E ++E GTL++SQ AY++ ++ RF V S IPASPG D+GPK+D GG+WPVREA GS+MW+ST +RPDI AVR VAR+AH P ER W+AI+KIL+YL ET+ LGITY RGSGL L +Y DA YA+ + DRR VSG+A T+GGTV+SH SK Q +VSLS++E EYIAAG GVKEALFVRAVLSFIAPET G+S VLEDNQ AL++NPLSSARSKHIDVR+HFIR +F++ IS+++V++++QHAD+LTKAL ++ +YHR+ L+N A Sbjct: 2 TVAGVTKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFA 508
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 641 bits (1653), Expect = 1.990e-203 Identity = 319/516 (61.82%), Postives = 403/516 (78.10%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHADILTKALRGANFRYHRKHLINLAE 2748 +VE+P +VAGV +SVYR+GWE+AM+ EF+GH+ T F VD P GR+PVSSKWCF +KT+KEGKI FKARL+ +GF+Q+ +VDY HSSSPC SSASI+L+LA+ANEK + H+DV Q Y A+LDEEV++KLP GCG++S K+E AI+GLKQSG + G+ ADTL+ N E CKADP +FRK+VD VVVMII +YVDD+L+ S ED + LLASLNKKFPT NLGE +D C IE +VE GTL++SQ AY++ +++RF V S IPA+PGADLGPK++ GG+WPVREA GS+MW+ST +RPD+ AVR VAR+AH P +R W AI KIL YL T+ LGITY RGSGL L +Y DA YA+ + DRR VSG+A T+GGTVVSH SK Q +VSLS++E EYIAAG GVKEALFVRAVLSF+APET G+S VLEDNQ AL++NPLSS R+KHIDVR+HFIR +F++ ISV++V + +QHAD+LTKAL + +YHR+ L+NL E Sbjct: 732 DVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 641 bits (1653), Expect = 1.790e-199 Identity = 319/516 (61.82%), Postives = 403/516 (78.10%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHADILTKALRGANFRYHRKHLINLAE 2748 +VE+P +VAGV +SVYR+GWE+AM+ EF+GH+ T F VD P GR+PVSSKWCF +KT+KEGKI FKARL+ +GF+Q+ +VDY HSSSPC SSASI+L+LA+ANEK + H+DV Q Y A+LDEEV++KLP GCG++S K+E AI+GLKQSG + G+ ADTL+ N E CKADP +FRK+VD VVVMII +YVDD+L+ S ED + LLASLNKKFPT NLGE +D C IE +VE GTL++SQ AY++ +++RF V S IPA+PGADLGPK++ GG+WPVREA GS+MW+ST +RPD+ AVR VAR+AH P +R W AI KIL YL T+ LGITY RGSGL L +Y DA YA+ + DRR VSG+A T+GGTVVSH SK Q +VSLS++E EYIAAG GVKEALFVRAVLSF+APET G+S VLEDNQ AL++NPLSS R+KHIDVR+HFIR +F++ ISV++V + +QHAD+LTKAL + +YHR+ L+NL E Sbjct: 1111 DVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 641 bits (1653), Expect = 4.940e-198 Identity = 319/516 (61.82%), Postives = 403/516 (78.10%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHADILTKALRGANFRYHRKHLINLAE 2748 +VE+P +VAGV +SVYR+GWE+AM+ EF+GH+ T F VD P GR+PVSSKWCF +KT+KEGKI FKARL+ +GF+Q+ +VDY HSSSPC SSASI+L+LA+ANEK + H+DV Q Y A+LDEEV++KLP GCG++S K+E AI+GLKQSG + G+ ADTL+ N E CKADP +FRK+VD VVVMII +YVDD+L+ S ED + LLASLNKKFPT NLGE +D C IE +VE GTL++SQ AY++ +++RF V S IPA+PGADLGPK++ GG+WPVREA GS+MW+ST +RPD+ AVR VAR+AH P +R W AI KIL YL T+ LGITY RGSGL L +Y DA YA+ + DRR VSG+A T+GGTVVSH SK Q +VSLS++E EYIAAG GVKEALFVRAVLSF+APET G+S VLEDNQ AL++NPLSS R+KHIDVR+HFIR +F++ ISV++V + +QHAD+LTKAL + +YHR+ L+NL E Sbjct: 1274 DVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 626 bits (1614), Expect = 3.270e-193 Identity = 312/499 (62.53%), Postives = 392/499 (78.56%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHADILTKAL 2697 +VE+P +VAGV +SVYR+GWE+AM+ EF+GH+ T F VD P GR+PVSSKWCF +KT+KEGKI FKARL+ +GF+Q+ +VDY HSSSPC SSASI+L+LA+ANEK + H+DV Q Y A+LDEEV++KLP GCG++S K+E AI+GLKQSG + G+ ADTL+ N E CKADP +FRK+VD VVVMII +YVDD+L+ S ED + LLASLNKKFPT NLGE +D C IE +VE GTL++SQ AY++ +++RF V S IPA+PGADLGPK++ GG+WPVREA GS+MW+ST +RPD+ AVR VAR+AH P +R W AI KIL YL T+ LGITY RGSGL L +Y DA YA+ + DRR VSG+A T+GGTVVSH SK Q +VSLS++E EYIAAG GVKEALFVRAVLSF+APET G+S VLEDNQ AL++NPLSS R+KHIDVR+HFIR +F++ ISV++V + +QHAD+LTKAL Sbjct: 1131 DVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 593 bits (1529), Expect = 4.810e-191 Identity = 302/499 (60.52%), Postives = 379/499 (75.95%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTS-------EPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHA 2676 +VE+P +VAGV +SVYR+GWE+AM+ EF+GH+ T F VD P GR+PVSSKWCF +KT+KEGKI FKARL+ +GF+Q+ +VDY HSSSPC SSASI+L+LA+ANEK + H+DV Q Y A+LDEEV++KLP GCG++S K+E AI+GLKQSG + G+ ADTL+ N E CKADP +FRK+VD VVVMII +YVDD+L+ S ED + LLASL+KKFPT NL E +D C IE +VE GTL++SQ AY++ ++KRF V S IPASPG DLGPK+D GG+WPVREA GS+MW+ST +RPD+ AVR VAR+AH P +R W AI KIL YL T+ LGITY RGSGL L +Y DA YA+ + DRR VSG+A T+GGTVVSH SK Q +VSLS++ E EY AG VKEALFVRAVLSF+APET G+S VL DNQ AL++NPLSS R+KHIDVRFHFIR +F++ ISV+++ + +QHA Sbjct: 286 DVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVL-DNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDISVKFIPTTEQHA 782
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 572 bits (1475), Expect = 2.030e-182 Identity = 298/516 (57.75%), Postives = 382/516 (74.03%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHADILTKALRGANFRYHRKHLINLAE 2748 +VESP +VAGV +SVYR+GWE+AM+ EF+GH+ +G + +W KT+KEGKI KAR + +GF+Q+ + SSSPC SSASI+L+LA+ANEK + H+DV Q Y A+LDEEV++KLP GCG++S K+E AI+GLKQSG + G+ ADTL+ N E CKADP +FRK+VD VVVMII +YVDD+L+ S ED + LLASLNKKFPT NLGE +D C IE +V+ GTL++SQ AY++ +++RF V S IPA+PGADLGPK++ GG+WPVREA GS+MW+ST +RPD+ AVR VAR+AH P +R W AI KIL YL T+ LGITY RGSGL L +Y DA YA+ + DRR VS +A T+GGTVVSH SK + +VSLS++E EYIAAG GVKEALFVRAVLSF+APET G+S VLEDNQ AL++NPLSS KHIDVRFHFIR +F++ SV++V + +QHADILT+AL A+ +YHR+ L+NL E Sbjct: 338 DVESPPMTVAGVNKSVYREGWEQAMREEFEGHLG-----------HGDVFIRRRW----KTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADTE-DRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKLMNLPE 837
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 565 bits (1455), Expect = 7.070e-177 Identity = 298/541 (55.08%), Postives = 376/541 (69.50%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKH-------------------------IDVRFHFIREIFKARKISVEYVASADQHADILTKALRGANFRYHRKHLINLAE 2748 +VE P +VAGV +SVYR+ E+AM+ EF+GH+ T F VD P GR+PVSSKWCF +KT+KEGKI FKARL+ +GF+Q+ +VDY HSSSPC SSASI+L+LA+ANEK + H+DV Q Y A+LDEEV++KLP GCG++S K+E AI+GLKQSG + G+ ADTL+ N E CKADP +FRK+VD VVVMII +YVDD+L+ S ED + LLASLNKKFPT NLGE +D C IE +VE GTL++SQ AY++ + G +WP REA GS++W+ST +RPD+ AVR VAR+AH P +R W AI KIL YL T+ LGITY RGSGL L +Y DA YA+ + DRR V+G+A T+GGTVVSH SK Q +VSLS++E EYIAAG GVKEALFVRAVLSF+APET G+S VLEDNQ AL++NPLSS R+KH IDVRFHFI + ++ ISV++V + +QHAD+LTKAL A+ +YHR L+NL E Sbjct: 532 DVEPPPMTVAGVAKSVYRERLEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSM----------------------------GEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHRREISFHRRIEFXVFVFDGSRVARNIDVRFHFIGGLIRSGDISVKFVPTTEQHADLLTKALSRASLKYHRHKLMNLPE 1043
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 567 bits (1462), Expect = 1.230e-175 Identity = 292/514 (56.81%), Postives = 370/514 (71.98%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHADILTKALRGANFRYHRKHLINL 2742 +VE+ + V+ S YRK W+EA++ E DGH KT F ++++P GRK VS+KW FDYKTD++G IT FKARL+ +GF+QV DY HSSS C + +SI+L +A A E LP RHFD+ Q Y A + EE+Y+++ G G + +K E A++GLKQSG + G A+ L+ + E C+ADP +FRKIVDG VV II +YVDD++ S E+ + LL SL K P +LGE T YD C IE ++ELGT LSQ+AY+ L+ RFG+ + PA P A+LGPK+D PG D PVR+A G LMW +T TRPDI A+ V R AH PT R W+A+++ILSYL+ T LGITYVRGSGL L +Y DA YA++D RR V+GIAVT+GGTVVSHASK QR+VSLSTSE EYIAAG GVKEALFVRAVLSFIAPET GA VLEDNQ +L++NP SSARSKHIDVRFHFIRE+FK+ +ISVEY+ + +QHAD+LTKAL HR L+N+ Sbjct: 731 DVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNI 1244
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 569 bits (1466), Expect = 2.320e-171 Identity = 293/514 (57.00%), Postives = 370/514 (71.98%), Query Frame = 1 Query: 1201 EVESPSHSVAGVERSVYRKGWEEAMQSEFDGHMKT*NFHMVDRVPNGRKPVSSKWCFDYKTDKEGKITKFKARLLPKGFTQVRDVDYTHSSSPCLSSASIQLVLALANEKELPFRHFDVAQMYIRASLDEEVYMKLPGGCGEQSKMTVKSESAIHGLKQSGCK*GHLCADTLIANESEPCKADPFIFRKIVDGVVVMIIRVYVDDLLIGES*EDYQSLLASLNKKFPTNNLGEYT*YDECGIETNVELGTLKLSQEAYVERLIKRFGV*SIPDIPASPGADLGPKQDGRPGGDWPVREAGGSLMWLSTMTRPDIINAVRGVARYAHEPTERLWQAIMKILSYLDETKRLGITYVRGSGLSLNMYADADYANKDNDRRLVSGIAVTLGGTVVSHASKKQRVVSLSTSEPEYIAAGNGVKEALFVRAVLSFIAPETCGASANVLEDNQRIKALIENPLSSARSKHIDVRFHFIREIFKARKISVEYVASADQHADILTKALRGANFRYHRKHLINL 2742 +VE+ + V+ S YRK W+EA++ E DGH KT F ++++P GRK VS+KW FDYKTD++G IT FKARL+ +GF+QV DY HSSS C + +SI+L +A A E LP RHFD+ Q Y A + EE+Y+++ G G + +K E A++GLKQSG + G A+ L+ + E C+ADP +FRKIVDG VV II +YVDD++ S E+ + LL SL K P +LGE T YD C IE ++ELGT LSQ+AY+ L+ RFG+ + PA P ADLGPK+D PG D PVR+A G LMW +T TRPDI A+ V R AH PT R W+A+++ILSYL+ T LGITYVRGSGL L +Y DA YA++D RR V+GIAVT+GGTVVSHASK QR+VSLSTSE EYIAAG GVKEALFVRAVLSFIAPET GA VLEDNQ +L++NP SSARSKHIDVRFHFIRE+FK+ +ISVEY+ + +QHAD+LTKAL HR L+N+ Sbjct: 1284 DVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNI 1797 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1019.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1019.8.1 >prot_A-nodosum_M_contig1019.8.1 ID=prot_A-nodosum_M_contig1019.8.1|Name=mRNA_A-nodosum_M_contig1019.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=296bp MWYGSPSLAGEVWPFLKPAIYRVKRKDKSQPKAQDCYYVGPSVNHPRDCMback to top mRNA from alignment at A-nodosum_M_contig1019:247445..251767- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1019.8.1 ID=mRNA_A-nodosum_M_contig1019.8.1|Name=mRNA_A-nodosum_M_contig1019.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4323bp|location=Sequence derived from alignment at A-nodosum_M_contig1019:247445..251767- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1019:247445..251767- >mRNA_A-nodosum_M_contig1019.8.1 ID=mRNA_A-nodosum_M_contig1019.8.1|Name=mRNA_A-nodosum_M_contig1019.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at A-nodosum_M_contig1019:247445..251767- (Ascophyllum nodosum dioecious)back to top |