mRNA_A-nodosum_M_contig10159.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10159.3.1
Unique NamemRNA_A-nodosum_M_contig10159.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10159.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10159contigA-nodosum_M_contig10159:13458..14520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866375.1544144-CDS-A-nodosum_M_contig10159:13457..135371680866375.1544144-CDS-A-nodosum_M_contig10159:13457..13537Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10159 13458..13537 +
1680866375.169771-CDS-A-nodosum_M_contig10159:14415..145181680866375.169771-CDS-A-nodosum_M_contig10159:14415..14518Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10159 14416..14518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10159.3.1prot_A-nodosum_M_contig10159.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10159 13458..14518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10159.3.1

>prot_A-nodosum_M_contig10159.3.1 ID=prot_A-nodosum_M_contig10159.3.1|Name=mRNA_A-nodosum_M_contig10159.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
RTRTGFIRDASLRGRKDAPRKFSSTLGHETPLKDSHLLPDQSSRRKPRPA
TGACANPLPME
back to top

mRNA from alignment at A-nodosum_M_contig10159:13458..14520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10159.3.1 ID=mRNA_A-nodosum_M_contig10159.3.1|Name=mRNA_A-nodosum_M_contig10159.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1063bp|location=Sequence derived from alignment at A-nodosum_M_contig10159:13458..14520+ (Ascophyllum nodosum dioecious)
CGTACGCGGACTGGCTTCATTCGTGACGCATCCCTACGCGGTAGGAAAGA
CGCGCCAAGAAAATTTTCATCGACACTTGGGTGAGATATTCTTGAAAAAA
ACTTTAAATACCGGTAAGCGGTAAAACAAAAAGAGCTATTATTTGATAAA
TAAAATGGAACCGGTAGCGAACCAGAGGAGCACAAAAGACACCAAGATAT
CATGCAATACTGTCGAGTGCAACGAACAACACTCTTGTATAAAAAACGCA
TGAGACGCCACCGCAGAGAAAACACGAACGCGGATCGTACGGGCATTCTT
TATCCGGGGAGTCGTCAATTATCACCCCATCTATATAAAACTATGTCTAA
TGATGGCGCACGATGCCACTGATCACAAAGGTCCATTCTAAAAGCTAAGC
TCGACCATGCTGGACAAAGGTAGGGGCTCAGCGAGTCTCGCCCCACGCAG
ATACTGCGCTTGAAACCTCTTCCACGTCCTGCCGGAGAAGGCACATGTGG
GGGAGGCGTGTAGCGTGGGGGGGGGGGGGCAGAGGGGACGCAGATAAACG
GGAGCATCGAAGATGGTCAGCGAAAAAAGACGATCGATCGCGGTTATACT
TATTGGGCTTTAGACTAAATCTAACGTCCATTTCGAGACTGGAGCGTATG
TTGTTCCCCGTCAGTCGCTGCTTCACTGGAACACCGCACTCTGGCACCGA
ACCAGTTTTCTTTATGAAGCCACAGGGTGAAAATGTAGAATAAGTATGAA
CCGCCAAACACCACAAACCGCGCACTGATGCTAAGCACAAAAAAAAGGGA
CCAACGATACCCATCGCGGTGCGCGGTACACAACAGCTTTCGGAGGATGC
TTATGGGCCGCACCGCCATCCTGCATCCCATCACATAACCCCACATCAAC
TTTTGACGTGCGCTTCCCCCCCCCCCCCCCCCCCGAAAAAAAACTCCCTC
TTTCCTAGTCACGAAACACCCCTTAAAGACTCACATCTCCTTCCCGACCA
GAGCTCGCGGCGGAAGCCCAGGCCGGCAACCGGCGCTTGCGCGAACCCGC
TCCCGATGGAGAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10159:13458..14520+

>mRNA_A-nodosum_M_contig10159.3.1 ID=mRNA_A-nodosum_M_contig10159.3.1|Name=mRNA_A-nodosum_M_contig10159.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig10159:13458..14520+ (Ascophyllum nodosum dioecious)
CGTACGCGGACTGGCTTCATTCGTGACGCATCCCTACGCGGTAGGAAAGA
CGCGCCAAGAAAATTTTCATCGACACTTGGTCACGAAACACCCCTTAAAG
ACTCACATCTCCTTCCCGACCAGAGCTCGCGGCGGAAGCCCAGGCCGGCA
ACCGGCGCTTGCGCGAACCCGCTCCCGATGGAG
back to top