mRNA_A-nodosum_M_contig1015.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1015.2.1
Unique NamemRNA_A-nodosum_M_contig1015.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-19
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   67 ARGCSRGIGCGETISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318
            A G   G G G  IS+EAFV+F  WW   M T S +  DW ST P ++HGF+SR  AE  L E+E GTFL RFS S+PG + +S
Sbjct:  106 AFGRDGGNGNGNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVS 189          
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.440e-17
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 MDSDDWSFVCHMLKSKQKDFGQARGCSRGIGCGET--------ISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318
            +D+    F+  +L+  Q+   +AR  + G  C E         +S+EAF  F +WW   MAT   +  DW +TRP+++HGF+SR  ++ +L ++E GTFL RFS S  G + IS
Sbjct:  217 VDTPQLEFIRGILRRGQEAVAKARWGATGDECTEVGGDGRDDFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQRECGTFLLRFSESRMGALVIS 330          
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.000e-16
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  100 ETISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318
            + IS++AFV+F  WW   M T S +  DW ST P ++HGF+SR  AE  L E+E GTFL RFS S+PG + +S
Sbjct:  786 DVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVS 858          
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 3.480e-16
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    4 DSDDWSFVCHMLKSKQKDFGQARGCSRGIGCGET--------ISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318
            D+    F+  +L+  Q+   +AR  + G  C E         IS+EAF +F +WW   ++T   +  DW  TRP+++HGF+SR  A+ +L ++E GTFL RFS S+ G + IS
Sbjct:  715 DTPQLEFIRGILRRGQEAVARARWGATGDECPEVDGGCRYDFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVIS 827          
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: W7U5S9_9STRA (Sh2 domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5S9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.260e-8
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  100 ETISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318
            + + I  F  FC+ W     + + +  +W+  +P  +HGF+SR+  E++L   + GTFLFRFS S  GL+++S
Sbjct:  738 DLVRITDFAVFCEGWVPAQNSIALLCREWLCNKPRLLHGFLSRKETEALLQGYKEGTFLFRFSTSHLGLLSLS 810          
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: A0A7S2F5D4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5D4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.020e-7
Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 1
Query:  106 ISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTISV 321
            +S    V   KWW   ++  + +   W   +  +IHG + R  A+ +L  ++PGTFLFRFS S+P  + ISV
Sbjct:   68 VSRSMLVALKKWWTPVLSIVTLLPGPW---QQWQIHGMLDRATADQLLLNRQPGTFLFRFSGSQPQFLVISV 136          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KJ41_9PHAE1.680e-1951.19SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPT3_9PHAE6.440e-1736.84SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNX8_ECTSI1.000e-1650.68SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY4_ECTSI3.480e-1637.17SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
W7U5S9_9STRA1.260e-835.62Sh2 domain containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2F5D4_9STRA2.020e-736.11Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1015contigA-nodosum_M_contig1015:34239..34568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNX8
PFAMsCHAT,FHA,NACHT,SH2
Model size330
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.64e-17
EggNOG OGs28NM8@1|root,2QV6X@2759|Eukaryota
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866374.0481844-CDS-A-nodosum_M_contig1015:34238..345681680866374.0481844-CDS-A-nodosum_M_contig1015:34238..34568Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1015 34239..34568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1015.2.1prot_A-nodosum_M_contig1015.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1015 34239..34568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1015.2.1

>prot_A-nodosum_M_contig1015.2.1 ID=prot_A-nodosum_M_contig1015.2.1|Name=mRNA_A-nodosum_M_contig1015.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
MDSDDWSFVCHMLKSKQKDFGQARGCSRGIGCGETISIEAFVQFCKWWKK
TMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEP
GLMTISVKTE
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mRNA from alignment at A-nodosum_M_contig1015:34239..34568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1015.2.1 ID=mRNA_A-nodosum_M_contig1015.2.1|Name=mRNA_A-nodosum_M_contig1015.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:34239..34568+ (Ascophyllum nodosum dioecious)
ATGGATTCGGACGATTGGAGCTTCGTGTGCCACATGCTCAAGTCTAAGCA AAAGGACTTCGGGCAAGCGAGAGGCTGCTCACGTGGCATTGGCTGTGGCG AGACCATTTCAATCGAAGCGTTCGTGCAATTTTGCAAGTGGTGGAAGAAG ACGATGGCGACGACCTCGCGGATGTTGGCCGACTGGGTTTCCACGCGGCC GATCAAGATTCACGGCTTCGTGAGCAGGGAGAGGGCTGAGAGCATGCTCT GGGAGAAGGAACCCGGGACGTTCTTGTTCAGGTTCAGCGCAAGCGAGCCC GGACTGATGACGATCAGCGTCAAAACGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1015:34239..34568+

>mRNA_A-nodosum_M_contig1015.2.1 ID=mRNA_A-nodosum_M_contig1015.2.1|Name=mRNA_A-nodosum_M_contig1015.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:34239..34568+ (Ascophyllum nodosum dioecious)
ATGGATTCGGACGATTGGAGCTTCGTGTGCCACATGCTCAAGTCTAAGCA
AAAGGACTTCGGGCAAGCGAGAGGCTGCTCACGTGGCATTGGCTGTGGCG
AGACCATTTCAATCGAAGCGTTCGTGCAATTTTGCAAGTGGTGGAAGAAG
ACGATGGCGACGACCTCGCGGATGTTGGCCGACTGGGTTTCCACGCGGCC
GATCAAGATTCACGGCTTCGTGAGCAGGGAGAGGGCTGAGAGCATGCTCT
GGGAGAAGGAACCCGGGACGTTCTTGTTCAGGTTCAGCGCAAGCGAGCCC
GGACTGATGACGATCAGCGTCAAAACGGAG
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