mRNA_A-nodosum_M_contig1015.2.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.680e-19 Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 67 ARGCSRGIGCGETISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318 A G G G G IS+EAFV+F WW M T S + DW ST P ++HGF+SR AE L E+E GTFL RFS S+PG + +S Sbjct: 106 AFGRDGGNGNGNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVS 189
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 6.440e-17 Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1 Query: 1 MDSDDWSFVCHMLKSKQKDFGQARGCSRGIGCGET--------ISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318 +D+ F+ +L+ Q+ +AR + G C E +S+EAF F +WW MAT + DW +TRP+++HGF+SR ++ +L ++E GTFL RFS S G + IS Sbjct: 217 VDTPQLEFIRGILRRGQEAVAKARWGATGDECTEVGGDGRDDFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQRECGTFLLRFSESRMGALVIS 330
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 1.000e-16 Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 Query: 100 ETISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318 + IS++AFV+F WW M T S + DW ST P ++HGF+SR AE L E+E GTFL RFS S+PG + +S Sbjct: 786 DVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVS 858
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 3.480e-16 Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1 Query: 4 DSDDWSFVCHMLKSKQKDFGQARGCSRGIGCGET--------ISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318 D+ F+ +L+ Q+ +AR + G C E IS+EAF +F +WW ++T + DW TRP+++HGF+SR A+ +L ++E GTFL RFS S+ G + IS Sbjct: 715 DTPQLEFIRGILRRGQEAVARARWGATGDECPEVDGGCRYDFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVIS 827
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: W7U5S9_9STRA (Sh2 domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5S9_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.260e-8 Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1 Query: 100 ETISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTIS 318 + + I F FC+ W + + + +W+ +P +HGF+SR+ E++L + GTFLFRFS S GL+++S Sbjct: 738 DLVRITDFAVFCEGWVPAQNSIALLCREWLCNKPRLLHGFLSRKETEALLQGYKEGTFLFRFSTSHLGLLSLS 810
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Match: A0A7S2F5D4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5D4_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 2.020e-7 Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 1 Query: 106 ISIEAFVQFCKWWKKTMATTSRMLADWVSTRPIKIHGFVSRERAESMLWEKEPGTFLFRFSASEPGLMTISV 321 +S V KWW ++ + + W + +IHG + R A+ +L ++PGTFLFRFS S+P + ISV Sbjct: 68 VSRSMLVALKKWWTPVLSIVTLLPGPW---QQWQIHGMLDRATADQLLLNRQPGTFLFRFSGSQPQFLVISV 136 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1015.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1015.2.1 >prot_A-nodosum_M_contig1015.2.1 ID=prot_A-nodosum_M_contig1015.2.1|Name=mRNA_A-nodosum_M_contig1015.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp MDSDDWSFVCHMLKSKQKDFGQARGCSRGIGCGETISIEAFVQFCKWWKKback to top mRNA from alignment at A-nodosum_M_contig1015:34239..34568+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1015.2.1 ID=mRNA_A-nodosum_M_contig1015.2.1|Name=mRNA_A-nodosum_M_contig1015.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:34239..34568+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1015:34239..34568+ >mRNA_A-nodosum_M_contig1015.2.1 ID=mRNA_A-nodosum_M_contig1015.2.1|Name=mRNA_A-nodosum_M_contig1015.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:34239..34568+ (Ascophyllum nodosum dioecious)back to top |