mRNA_A-nodosum_M_contig1013.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1013.1.1
Unique NamemRNA_A-nodosum_M_contig1013.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1013.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1013contigA-nodosum_M_contig1013:3861..8540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size373
Hectar predicted targeting categoryother localisation
Exons3
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866373.4274743-UTR-A-nodosum_M_contig1013:3860..38671680866373.4274743-UTR-A-nodosum_M_contig1013:3860..3867Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1013 3861..3867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866373.4375732-CDS-A-nodosum_M_contig1013:3867..39101680866373.4375732-CDS-A-nodosum_M_contig1013:3867..3910Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1013 3868..3910 +
1680866373.448688-CDS-A-nodosum_M_contig1013:7967..81981680866373.448688-CDS-A-nodosum_M_contig1013:7967..8198Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1013 7968..8198 +
1680866373.4596965-CDS-A-nodosum_M_contig1013:8448..85401680866373.4596965-CDS-A-nodosum_M_contig1013:8448..8540Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1013 8449..8540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1013.1.1prot_A-nodosum_M_contig1013.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1013 3868..8540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1013.1.1

>prot_A-nodosum_M_contig1013.1.1 ID=prot_A-nodosum_M_contig1013.1.1|Name=mRNA_A-nodosum_M_contig1013.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=122bp
MDKVTNDGDEIFPTSPQITRSMSSLSDGGRGRARGEHTDINNPNRTAHQR
HCIVAKVTSMGETVSQPSEDKDSVESDVERPRAPSEELPEQGSNSTDGTG
ERLQVMHQRLQEARDASESGTM
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mRNA from alignment at A-nodosum_M_contig1013:3861..8540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1013.1.1 ID=mRNA_A-nodosum_M_contig1013.1.1|Name=mRNA_A-nodosum_M_contig1013.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4680bp|location=Sequence derived from alignment at A-nodosum_M_contig1013:3861..8540+ (Ascophyllum nodosum dioecious)
ACAAGGCATGGACAAAGTCACGAACGACGGTGATGAAATCTTTCCTACAA
GTGAGTTCGGTATCATATTTCAGACATTTTCAGCAAGATCGGCGCGATCC
TGGAATACCGGTCTCGTTCTCCAGTAGAAGCGAGCTAACCCACTATTGAA
TGAGTAGCGACAGACCTGAAATTATGGCGGGCTGCACTGCTGAGCCATGG
AACAGTTCGCGCTTGCCGGTGTCGTTTGCCTGGTTTGTGAGTCTGGCATA
CTTCGTGATGGGTGCATCACTTAGTCTACAGCTAATCGAACCAAGCTACT
GTAGAGGTACCAAAACTACCCAACACTCGAAGTATGAGTGAGTGTGCTCA
TCCTTTCTGTCGAATATATATTTTGGCGTTTTTGAAGATATTGTAAATAC
TACCCCCGATTTGCATGTGTCGGATAAATATGACCATTTCGACGGTTCGT
CCTTTTGGAGTACTTCAGTACAAACGATGTAGTATTTAAGACCTCTAGCG
CAAGGTCTCCACAATTACACTCTTACGTGCCCTACGCGATATTATACCGT
AGCGCTAATTTTTATACCTGTAGTTCACCTCTTCCTCGAAAGTAAACCCT
TGCCCGCCCTCCCCGCCCTTCTCCGACAACCACGGAAACCGCCGCCGGAA
GGCTTACAAAATTGCACCTCGATCTATTCGCTGCTCCATACGAATGACCC
TGTCCGTTGTGATAACTTATATTGAGCAGTCGGGGAGAATCATGGAACAA
CTATGATTCTCTATGGGGCTAGTTACTCCGCTTATACTGGACGGTAGGGT
CATATTCTCACGATGTGGTAGACCCCTACTCTGGTCAGTTTTTTATAGAG
CTCAAGTATCAAGTACTTTTGTCTCTAGGTGTTTATTGACGCCCCATTGT
GTTTCCCCCAATGCTATGCTACTAATACAATATGCTCTATATCATCTTCC
TCAAGACTCTAAGACCTTCCCTCTGGCGAGGGTTGCATCAATACACTAGT
GTTTAGGGACCCTAGAATGCTACGGAAGGCGAGCGAGGCTGTCTCCGAGG
GCAATGGCCCCGTCCACCAAGAAGAAGAATACGTGTTTGGCCAACCCGCG
CCGGTGGATCATTTTCGAGAGATAAAGAACCTTTCAAAAGAACAGGAGAA
AATGTTGAAAGAACTCCGCGATGATCTGAAGGATGGTATGAGGAGATTTA
TTGTACAGTATGCATCACGCCTAGAGCAGGACGCTCGGCAGCCACGTCTC
GCCATGGAGGCAGACGGGCAAGCAGACACTAAGACTCGCGAGCGCACGGA
GGGCGCCGCAACAGCAGTACAAGCAATGCGTGGGGATTGCTTTTCTGCAC
GCCGGGTTGAACTCGGCCCAAACACCAACTCGACCAGTTTCGGCGTGAAG
GCCGAACCTCCCGCTCTCCCTTGCAGGGATGATGTCGTGGTCGAGTGCGG
CGCTGCCGCATCCGAGTCGTGTCTCTCATCCATGGAGATGCGCCCATCAA
CAGCCGCTGGTGGCTTAGTTCCCACCGGCGACGCCTCCAAAGCCACGGAG
ACCAATTACAACCAGCCACCTCTTCGGCTTTGCTCGACCGAGGAGAGGGA
TCATCTCGAGGCGAATTGTAAGTCATCCGCCTCGAACGACAGCAGCAGCG
TCTTCCAGGAGAGGAACCTGTCTGCTACTCTCTATTGCCGGAGGGTCGTT
GACACAAAATCCAGGCAAAATAGGACCTTTGATCCAGGCGGTTCGCAAGG
TCACCTCCGCGCCTGCCCATTTTTGGGACCGTGACGCGCGTTGGTTTGTG
GCGAGGTTTTACGGGCTGGGGCAGCTGGAGACGAGCTGCAGCGTTTTTTC
GGAGGAGATTCGCTGGCTCTTTGGAAAAAGGCCGGTTATGATGCCGTGCC
AGGAAAAGTCTTGCCGTCGAGGGCGGCTCAAAACTACATGAACTCGAGGG
AAGAACAAAGGTCACGACGTCATGGCGACTGGAGGTTATTGGAAGTTAGG
GGCAAACGGTTGTCGAGGAGCGTCATGGAGTGATGAGCGTTTTGGAGCCA
ACAGCTTGACGGCAACTCCGCGAAGAGGACTCCTGCTTTCTGGACGTCTT
AGGACTTCAAGGACATCAGACCCCTTAATCTTCACAATATGGTATGCTGA
AAAGTGTACTCGTGTGCTGCTCTAGGTAGTACTGTAACGTTCCATGTGAC
CCTTCTATGCGTTTAGTAGATCGCTCTAGTAGCCCCCCTTTTTCCTTGAA
ATGCTGTTCTCTCAGGGAGGGCAAGTACTTGCTGACTCGTAGATTGCGGT
AGGTGATAGTTCGGTCGTTCATAATATTGCCTCAAGACTGGACTGAACTG
TTAGTACAGTACTACCGTAATTTTTCAATACCATGTCTTCCCCGCGAGCG
GAGCACGTATACTTTCCGAAGGATTCCCAAATATTCGCGTAGGGCTTGTT
CGTACAGCGTGTTCGTCTAGGTGTGCCCTTTCGAACTCGCGAAGCAGCTT
AGTGATGCTTGTATCGGGGAGGTATATCGTTCATGACCGCTCGACCGCTT
GTGCCCGCGACGCGTGTTGTAAGACGTTTTTCCCAAGAGAGAACCTAGCA
CTGCGTGCAAGGGATACAGTTTGTACCAAAATCTTAAAGCAATAGTAATC
AGTACTGAAGTGCGGTATCATGTTCACTTGAAGCATTTGGTAATATGGCT
GCTTGTGACAGCCCGTGCCTATATTGTACGCCGCATAGCCCTATTGTTTC
TCCCGCGATGCAGCTAGTCATTCACGACGAGTGTTTAGACTCAGAATGCC
CGACTGCCTGATTACCTTAGAAGACCAATGTGCAGACTCTGAAGGGTAGC
CCGCGATGGGCCATTTGGAAAAAATTGGCGTCCCTTTTCTCGCGACAAGA
GTACTTATTTTGAGACTAAGCTCTTTAGAGAGCACAGTCGTTCCTGTTGT
ATTGAAAATTCTACAGCACTTGAGTAGCTCGACTGAAACTTGCGAGGTAG
TATTGCCTCCGAATGCTCGTTCGCCTGATTCCCCGTAAATCTGTCTGTGA
TTGTTCAGAATTCAACAGCAGTCGAATAGTCAGGACTGGCTTGAGCCTTT
TCTCTTGACAACTGTTTGACCAGCGTGTCGACAACTCGCTCAATCGAACA
GCAGAGGTCAGTAGCACTTACTTTAAAAGTTCGATCGAAAACTTGCGACC
ACGTATCGTATTCTTCTAGCATATTCGCATACTGTTTTCCAATACGCGAT
AATCGACGTAGAGCTGCGTACGAGGGGATCATTCTTGGCTGAAATAATGT
TCCGCTTCCCTGGAGTTGTCCTTTGCTTGGAACCAGCAAGTCATAGTTGG
GAGTTTCGCTTTGGGGGCGCATAAACTAGGGAAGGACTTTTCCCATGCGC
TTTAAGATTTGAACATGCAATGCTCGTAGTCACCTGTGATGTTTTTTTTA
ATATTTGAGGCTCTAAGTACGTAGCGAGAGAGTGTTTTCCCCCATCTTGT
AGAGATAGATTGACTGCTATATGATCGCCTCTCTTTTCTCTAGCATGTTA
GCCTTCCACTACCAAAATAAGATTAGGGAGGGTGTCCGCTGTGATAACTT
ATATTGAGCAGTCGGGGAGAATCATGGAACAACTATGCTTCTCTATGGTT
AGTTACTCCGCTTGTACTGTACGGTAGGGTCAATATTCTCACGATGTGGT
AGAGCCCTACTCTGGTCAGTCTTTTATAGAGCTCAAGTATCAAGTACTTT
TGTCTCTAGGCGTTTATTGACGCCCCATTGTGTTTCCCCCAATGTCATGC
TATTAATACAATACGGTATCTATCATCTTCCTCAAGACTCTAAGACCTTC
CCTCTGGCGAGAGTTGTATCAATATGACCCATCCCAATGCTAAGAACATA
GCTAGAGCCTGCGAAATGAGATTTGGTCACGTGGTTGACGTTCAGGCGGA
CGAACCCACCATGATGAGCTACCGAGTGGTGTTAAAACAACGGTGCCTCT
GCAAAATGACTCTGGTGGGATTAACTCTAACTGTATTCTAAGGAGAGAGA
CAAATTAATGTTCTAAACATTCACTATCAAACGCGCCACTTTTAATTATC
CCTGCAGGCCCTCAGATTACAAGGTCTATGTCCTCTTTAAGTGACGGGGG
AAGAGGCAGAGCGAGGGGCGAACACACCGACATAAATAACCCAAACCGAA
CTGCCCACCAACGTCATTGTATTGTCGCCAAAGTGACATCGATGGGTGAA
ACGGTCTCACAACCCAGCGAAGATAAGGACAGCGTGGAGAGCGATGTAGA
GAGACCAAGAGCCCCTTCAGAAGAGCTTCCCGAGCAAGGTCGGGTACAGT
AGGGATCTTGATTCAGCGTTCAAGTATTTGAGGTTTTAACGAAATTTGTC
TAGTTGACTAGAAGGGAGGGAGGGGGGGGGGGGAGACATGTATAGCAAAA
CTCATCTCAACCTGAGATTGGCAACGAGTTAACTCGTGTCTGAGACTGAC
CACAAACCACGTCAAAGAGAACGCTGACTCGCTCCCAGTGCTTTTCGAAT
AGCTTGTCCTTTCGCCCGATCGTTGTGTTGCTGTGCAGGAAGTAATTCAA
CGGACGGCACGGGAGAGAGACTCCAAGTGATGCACCAACGGTTACAGGAA
GCACGCGATGCTTCAGAGAGTGGTACAATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1013:3861..8540+

>mRNA_A-nodosum_M_contig1013.1.1 ID=mRNA_A-nodosum_M_contig1013.1.1|Name=mRNA_A-nodosum_M_contig1013.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at A-nodosum_M_contig1013:3861..8540+ (Ascophyllum nodosum dioecious)
ATGGACAAAGTCACGAACGACGGTGATGAAATCTTTCCTACAAGCCCTCA
GATTACAAGGTCTATGTCCTCTTTAAGTGACGGGGGAAGAGGCAGAGCGA
GGGGCGAACACACCGACATAAATAACCCAAACCGAACTGCCCACCAACGT
CATTGTATTGTCGCCAAAGTGACATCGATGGGTGAAACGGTCTCACAACC
CAGCGAAGATAAGGACAGCGTGGAGAGCGATGTAGAGAGACCAAGAGCCC
CTTCAGAAGAGCTTCCCGAGCAAGGAAGTAATTCAACGGACGGCACGGGA
GAGAGACTCCAAGTGATGCACCAACGGTTACAGGAAGCACGCGATGCTTC
AGAGAGTGGTACAATG
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