mRNA_A-nodosum_M_contig1012.4.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1012.4.2
Unique NamemRNA_A-nodosum_M_contig1012.4.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: D7G2Q9_ECTSI (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q9_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 1.180e-122
Identity = 186/253 (73.52%), Postives = 217/253 (85.77%), Query Frame = 2 
Query:  200 MAGALDETKGVSVGLGDYKDGSITVEMPRMEISDAQVEAALAASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKVNGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVFSKK 958
            MAG LDETKGV+V L +YK G++TV +P +EI++AQVEAAL  SKKPY+LIPVRFVEEGGTKMGHTVIM+W+AKV+G  V GAKKENFELE KEGH +PW TF++K+AVGMGQMETKVFP  FP DFEIEGLRGK+ALVQAVVK+IAR+E + PETRSDDE+R  LR KGE T+++R D+AVDEAVKK LL+SC V+ADKVLNAVSWAKFGE+STL+FKWNCIKEKIA  EGIEPR V   LR EA V+  +K
Sbjct:    1 MAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQVEAALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRDEAEVILMEK 253
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BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A7S0VQZ5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQZ5_9CRYP)

HSP 1 Score: 175 bits (444), Expect = 2.320e-47
Identity = 110/278 (39.57%), Postives = 156/278 (56.12%), Query Frame = 2 
Query:  122 PPPVFASPAAANGAPSSQRRSQSSRMMAGALDETKGVSVGLGDYKDGSITVEMPRMEISDAQVEAALAASKKPYRLIPVRFVE-EGGTKMGHTVIMDWE--AKVNGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVV 946
            PPP+ A+ AA         RS     M G     K   V LG Y   S+T  +PR E+S+A V   L  + K YRL   RF + EGG +MGHTV++++   +   G  + G K   +ELELKEG  +PW+TF+S IAVGMGQ E K F V FP D+ +  L+GK+   +  VK I ++ ++ P+TR ++  R     + EA ++    + VD+A++  L+ +C  D  K   AVSWAKFGE+STL+ +W  IKE I  EEGI+         R++N V
Sbjct:   48 PPPLRAAHAAMG-------RSALGASMQGGSGGDKNAEVTLGQYTGLSVT--LPRAEVSEAAVAKILKENAKDYRLESARFTDGEGGARMGHTVLINFVGYSPETGAELKGTKANMYELELKEGQKEPWSTFASNIAVGMGQDEMKSFVVTFPGDYAVPALQGKQVRFETYVKKIMKKVAKDPDTRQEEVQRADAVAQLEAAIERNNLEKVDQALRLELMKTCAADTTKATEAVSWAKFGERSTLDLQWQIIKEAIGREEGIKDIGAVEEFLRDSNTV 316
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BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A4D9CVA6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVA6_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.030e-46
Identity = 107/257 (41.63%), Postives = 158/257 (61.48%), Query Frame = 2 
Query:  233 SVGLGDYKDGSITVEMPRMEISDAQVEAAL-AASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKV------------NGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAV-DEAV---KKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVFS 952
            +V LG YK+G+++   P+  +SDA+VEA +  A+KK ++L PVRFVEEGGT+MGHTV+ DW+A               G ++  A  +NF LELKE  ++P  +F+  +A GMGQMETKVF V  P    IE  RG  A +  +V+SI  +E+   + RS +E +  +R    A +Q++ D A   EA+   +  LL + + + +K+  +VSWAKFGE S  +FKW+ I+E IA+ EGI+  EV + L RE  VV++
Sbjct:   13 AVTLGPYKNGALSFTYPKPTVSDAEVEAQVKTAAKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGMGQMETKVFEVAMPESATIESWRGVTAKIMLLVRSINIKENLAADGRSIEEKQAAVR----AELQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT 265
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BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A1Y1I108_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I108_KLENI)

HSP 1 Score: 152 bits (383), Expect = 2.990e-38
Identity = 94/248 (37.90%), Postives = 137/248 (55.24%), Query Frame = 2 
Query:  230 VSVGLGDYKDGSITVEMPRMEISDAQVEAALAASK-KPYRLIPVRFVEEGGTKMGHTVIMDWEAKVN-----GELVHGAKKENFELELKEGHTDPWNTFSSKIAV-GMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVFS 952
            V + LG YKDG+I V   + E+S+ ++E AL A   K Y    + F   G  K+GH V + +E K +     G+L+ G K + FELEL+    DPW TF  +I   GMGQ E+K F + FP D++   LR   A     V  I  ++    + R +  +R  +     AT + + +  +D+ V++ LL + + D DKV  +VSWAKFGEKS  +FKWN + E++A  E IE  E  A LRR+A V F+
Sbjct:  102 VKIALGPYKDGAIKVSAKKFEVSNDEIEKALKAKLGKTYDFERINFTGSGA-KIGHMVKVSFEGKYSDGPNAGQLIRGTKADFFELELQPREDDPWKTFVEQIVKNGMGQEESKSFTLTFPADYKAVPLRNVAARFTVTVHEIGIKKMLEKDPRPEAAIRADIEADLRATAERKTNDLIDQEVRRVLLETSEADVDKVAASVSWAKFGEKSLQDFKWNLLLEEVARNEKIEFEEAKAFLRRQATVNFT 348
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BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A388KP71_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP71_CHABU)

HSP 1 Score: 152 bits (383), Expect = 1.540e-37
Identity = 92/248 (37.10%), Postives = 141/248 (56.85%), Query Frame = 2 
Query:  230 VSVGLGDYKDGSITVEMPRMEISDAQVEAALAASK-KPYRLIPVRFVEEGGTKMGHTVIMDWEAKV-----NGELVHGAKKENFELELKEGHTDPWNTFSSKIA-VGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVFS 952
            V V LG YK G I V+  + E++D +VE A    + K +    + F   G  K+GHTV +++E K      +G+L+ G K + ++LELKE    PW  F  +I   GMGQ E+K F V+FP DF+   LR  +A     VK+I  ++  P +TR + E R  ++ +  A  + + +  +D  ++ ALL S + D DK+ + VSWAKFGE S  +FKWN + E++A  E I   +V   LRREA++ ++
Sbjct:  181 VKVVLGPYKGGVIKVKATKHEVTDEEVERAFKEKREKTHEFERINFTGSGA-KLGHTVKINFEGKYAEGPKSGQLIQGTKADMYDLELKERPDYPWKRFVEEITGTGMGQEESKTFMVVFPPDFKAPHLRNVKARFTVTVKAIGVKKELPKDTRPEHEQREEIKDELVAAEERKSNAQIDPEIRSALLESSEADVDKIASNVSWAKFGENSLKDFKWNLLMEEVARVENIAFEDVMPFLRREADISYT 427
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BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A7S1MV31_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MV31_HEMAN)

HSP 1 Score: 126 bits (316), Expect = 1.370e-30
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 2 
Query:  437 VHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVV 946
            + G K   +ELELK  H +PW+TF+  IAVGMGQ E K F V FP+D+ +  L GK+   +  VK I  R ++  + R + E R       EA+M+      VD+A+++ L+ +C  D  K   AVSWAKFGEKSTL+ +W  IKE I  +EGI+  +      R+ N V
Sbjct:    2 MKGTKANMYELELKGDHKEPWSTFTENIAVGMGQDEMKSFVVTFPDDYAVPALVGKQVRFETYVKKIMNRVAKEADARPEAEQRAEAIAALEASMERSNLDKVDQAIRQELMKTCTADTTKATEAVSWAKFGEKSTLDLQWQIIKEAIGRKEGIKDIDAIENFLRQKNTV 171
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BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A7R9Y821_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y821_9VIRI)

HSP 1 Score: 124 bits (310), Expect = 8.030e-29
Identity = 86/254 (33.86%), Postives = 134/254 (52.76%), Query Frame = 2 
Query:  230 VSVGLGDYKDGSITVEMPRMEISDAQVEAALAASK-KPYRLIPVRFVEEGGTKMGHTVIMDWEAKVN------GELVHGAKKENFELELKEGHTDPWNTFSSKIA-VGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQA----VDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPRE-VTALLRREANVVFS 952
            V V L +YK G++ V   +    +A V+A L     K + L+ V F   G   MGHTV ++  A         G+ V G   ++  ++LK  +  P N F   I   GMGQME+K FPV FP+D++ E LRG   L   ++K IA +   P  T +D   R  LR++  A    +  +A     D A++ ALL  C+VD  K + +V+WAKFGE+S  ++ ++ I E+I   EG+  ++ +   LR EA++ ++
Sbjct:    7 VDVKLCEYKGGALCVRADKSVADEAAVDAELEEEMAKEFELVRVNFTGSGAA-MGHTVKLEMSATFGPGHQHAGQPVPGMTVDDLSVDLKTSNPFPLNHFVQAIVEAGMGQMESKTFPVAFPDDYQSERLRGVTCLFTIMIKEIAEKRPLPARTEAD---RATLREEIAARHDEQARRASAKRADLAIRNALLDGCEVDTQKTVESVAWAKFGEESIRDYAYSMILEEIGGREGLATQDDIKRFLREEASITWA 256
[Close]
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A4D9DGH6_9STRA (ABC transporter domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGH6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.930e-16
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 2 
Query:  200 MAGALDETKGV--------SVGLGDYKDGSITVEMPRMEISDAQVEAAL-AASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKV------------NGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGM 532
            ++GAL++  G         +V LG YK+G+++   P+  +SDA+VEA +  A+KK ++L PVRFVEEGGT+MGHTV+ DW+A               G ++  A  +NF LELKE  ++P  +F+  +A GM
Sbjct:   54 LSGALNDMTGEMASTSAKGAVTLGPYKNGALSFTYPKPTVSDAEVEAQVKTAAKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGM 185
[Close]
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A1V5HNE3_9BACT (Trigger factor n=1 Tax=Tenericutes bacterium ADurb.BinA124 TaxID=1852921 RepID=A0A1V5HNE3_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 9.030e-11
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 2 
Query:  236 VGLGDYKDGSITVEMPRMEISDAQVEAALAASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKVNGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARR 646
            V LG Y    + V+    E+ +++VEAA+    +      +  VEEG  ++GHT + D+E +V+G L  G   +N+ LE+  G   P   F  ++ VGM Q E +   V FP+D++ E L+GKEA+ +  +  I +R
Sbjct:  118 VVLGKYF--GVEVKKDSTEVEESEVEAAINRDLRSKS--DLELVEEGSLELGHTAVFDFEGRVDGVLFEGGTAKNYSLEIGSGQFIPG--FEEQM-VGMKQEEERDLKVKFPDDYQAENLKGKEAVFKVKLHEIKKR 247
[Close]
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A257DIN3_9SPHN (Trigger factor n=8 Tax=Sphingomonadales TaxID=204457 RepID=A0A257DIN3_9SPHN)

HSP 1 Score: 72.4 bits (176), Expect = 5.830e-10
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  266 ITVEMPRMEISDAQVEAA---LAASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKVNGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDEL 685
            IT+E   +E+SDAQV+ +   LAA +K +     ++      KMG +V++D+E KV+G    G K E   +EL  G   P   F  ++ VG+   + KV  V FP D+  E L+GK A    VV  + +    P E ++DD L
Sbjct:   97 ITLERMTVEVSDAQVDESILKLAAGQKSFEAADKKYA----AKMGDSVVIDFEGKVDGVPFEGGKGEGMAVELGSGQLIPG--FEDQL-VGVKANDEKVLNVTFPEDYNAENLKGKPATFDIVVTEVRK----PVEAKADDNL 228
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q9_ECTSI1.180e-12273.52FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
A0A7S0VQZ5_9CRYP2.320e-4739.57Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A4D9CVA6_9STRA1.030e-4641.63Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Y1I108_KLENI2.990e-3837.90Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A388KP71_CHABU1.540e-3737.10Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7S1MV31_HEMAN1.370e-3041.18Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7R9Y821_9VIRI8.030e-2933.86Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A4D9DGH6_9STRA6.930e-1640.15ABC transporter domain-containing protein n=1 Tax=... [more]
A0A1V5HNE3_9BACT9.030e-1133.58Trigger factor n=1 Tax=Tenericutes bacterium ADurb... [more]
A0A257DIN3_9SPHN5.830e-1034.97Trigger factor n=8 Tax=Sphingomonadales TaxID=2044... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1012contigA-nodosum_M_contig1012:56202..65468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog439292.Bsel_1415
Preferred nametig
PFAMsFKBP_C,Trigger_C,Trigger_N
Model size1415
Max annot lvl91061|Bacilli
KEGG koko:K03545
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons8
Evalue7.13e-12
EggNOG OGsCOG0544@1|root,COG0544@2|Bacteria,1TQQ8@1239|Firmicutes,4H9Q8@91061|Bacilli,26NKI@186821|Sporolactobacillaceae
Ec32 ortholog descriptionSecreted hypothetical protein
Ec32 orthologEc-11_003150.1
DescriptionInvolved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
Cds size930
COG categoryO
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1012.4.2prot_A-nodosum_M_contig1012.4.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1012 56236..65017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.768776-UTR-A-nodosum_M_contig1012:56201..562351680866370.768776-UTR-A-nodosum_M_contig1012:56201..56235Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1012 56202..56235 +
1680866370.8517337-UTR-A-nodosum_M_contig1012:65017..654681680866370.8517337-UTR-A-nodosum_M_contig1012:65017..65468Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1012 65018..65468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.7790203-CDS-A-nodosum_M_contig1012:56235..564181680866370.7790203-CDS-A-nodosum_M_contig1012:56235..56418Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 56236..56418 +
1680866370.7887597-CDS-A-nodosum_M_contig1012:61410..615001680866370.7887597-CDS-A-nodosum_M_contig1012:61410..61500Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 61411..61500 +
1680866370.7973876-CDS-A-nodosum_M_contig1012:62419..625331680866370.7973876-CDS-A-nodosum_M_contig1012:62419..62533Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 62420..62533 +
1680866370.8058484-CDS-A-nodosum_M_contig1012:62675..627321680866370.8058484-CDS-A-nodosum_M_contig1012:62675..62732Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 62676..62732 +
1680866370.8159392-CDS-A-nodosum_M_contig1012:63120..632251680866370.8159392-CDS-A-nodosum_M_contig1012:63120..63225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 63121..63225 +
1680866370.8244193-CDS-A-nodosum_M_contig1012:63595..637361680866370.8244193-CDS-A-nodosum_M_contig1012:63595..63736Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 63596..63736 +
1680866370.8357966-CDS-A-nodosum_M_contig1012:64421..644961680866370.8357966-CDS-A-nodosum_M_contig1012:64421..64496Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 64422..64496 +
1680866370.843686-CDS-A-nodosum_M_contig1012:64852..650171680866370.843686-CDS-A-nodosum_M_contig1012:64852..65017Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 64853..65017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1012.4.2

>prot_A-nodosum_M_contig1012.4.2 ID=prot_A-nodosum_M_contig1012.4.2|Name=mRNA_A-nodosum_M_contig1012.4.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=310bp
MGLVFVSIDCFVLLPSAPVIPLSARRWAKPPPVFASPAAANGAPSSQRRS
QSSRMMAGALDETKGVSVGLGDYKDGSITVEMPRMEISDAQVEAALAASK
KPYRLIPVRFVEEGGTKMGHTVIMDWEAKVNGELVHGAKKENFELELKEG
HTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKS
IARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCK
VDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRRE
ANVVFSKKK*
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mRNA from alignment at A-nodosum_M_contig1012:56202..65468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1012.4.2 ID=mRNA_A-nodosum_M_contig1012.4.2|Name=mRNA_A-nodosum_M_contig1012.4.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9267bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:56202..65468+ (Ascophyllum nodosum dioecious)
CTTCCCCTCGCGCACCGCCTCGCTCTTCTTGGCGATGGGCTTGGTTTTTG
TGTCCATCGATTGCTTCGTGCTTCTGCCGTCGGCACCGGTCATACCCTTG
TCGGCACGTAGATGGGCGAAGCCGCCTCCAGTCTTCGCCTCACCAGCAGC
GGCGAACGGAGCTCCAAGTTCGCAACGGCGGAGTCAAAGTTCGCGCATGA
TGGCCGGTGCACTCGATGTGAGACAGAGACCCTCGCGCGAAATGTGATAT
AGCGGATACCTATTGCGAAGAGTAGCATGACTAACATCCACGTAAACATA
TAACCTCCAAGCCATCGTATATTGTTGAGAAGGTGTAGGAGTCTCTACAG
CACATTGATATTTTTATTGGTTGAATTCTCACATATAAGGCCGACTCTTA
TGGGAACGAAAAACTTATACGAAAATGGACCAGATCCGTTTTTTTTTTTT
TCGATCTTATGGGAACGAGAATGGTCCAGATTCGTATAGCCAAATCCGTT
TGAGCGTTTCGTAACAAGACTACAAACGGATTTGGTGCCCAGATTCGTTT
GCACCAGCGATACGAAACTGCAAACGGATTTCGCACGCGGCGCAACTATT
ACTACATTTGGCCAATGATACTGCTAGAACTCAAATACATAATTACCTCT
GCCAGGAATGCGGCAGCTATCGCCAAGGGTATGGGCGAATTGAGGTCCAT
AGTTTTTTACTTAAGAGAAAAGAGAGCACACTGGCGGCAAGGTCCGAGGT
GCTTGAGTTGCTTAAAATTAAGGATGGTAGGTGGTTTGGGAGGCTTGATG
ATGACTCCCCGAAGGTCAAGTGGATGCGGCGCGTGTATCCCCGAGTTGAC
TACACGCCGGCACCGTGGACGGTCGCAGGCAACGTGGACCGTTGTTATGC
TTAGGCAGCCGAGCTAAAGCATCCACACTTGAAGGGAGGCATTGACGTTT
CACCGGCGGTTCCGCTTTCCATATGTCTTTTCGTGGGCTCCTCTCCTTGT
TGGCGACACAGCCGAAGTGGTATCATCATCTGCAACAAGTCGTACAGAGT
TGATTCCACATAACTACAGACAAAATCGGTGTACCCAGCAAACTGCATGT
AGCACACACACACACACCCGTACTGTAACTGAATTGTTTACGTACGAAGT
ACTACAGCAGTCTGTACTTGTTTTAGTATTGTTTTCATCTGAATTCTGGT
ATACAGTACATCCCGATATCGTTCACCGAAACAGGAAGCGAGCGCCCCTG
ACACAGTCAGCGGTTCGAGAAGAGTTTATTGAGAAAAGTGCCAGGTAATT
TCTATAATAGGCTGCCTACTTATTCTATATAGTCCAAGTCCATCCCCCAC
AATACAGCAAACCGGGTAGTTTGTACAAATGTCTTCTGATGTATGTAGTA
GCCATCTGTCTTCGGATGATACGTACCGGCTGCAGATTTTCCCTCATCTA
CGGCGAATAGCGATGCGACCAGCTATTCCAGACTACATTAGCTTTCACAG
TTGCCGTTGAACTCCGCCAAGCGCTTGGCACAGCATGACCCCCGTGTACC
GATACGACATGCTGCGTGCATTCGTTGTGGCGGAATTTTGTCCCGATGCA
TCCGTTCGCCTGAGCATGATAGAGTTATCTCCAGGGCAATGTGTCCGAGT
ACAGCAGTACCGAAGTATGGGTACGTAGACTGAATCTAAGACGTCTTCGT
GAAAACCATACCGGCAGACGAACCTGCTGCAATTCCGGGAAGCCCCGACG
AGCATCGAAACCGCACACATGAACAAAATTTACCTCGACCCTTGATCTAA
TGGAACAGTGGAGCCAGCTTAAGGCCGTGGAATTTTTGCAGCCAGCAAAC
GATAACATCGGTGCGGTGTCTGTGTTAGTTCTGGACGTAGTGTACAAACT
TAGAGTAGCGCATTGCGGGCTGTGCTTGTGTTTTCATCCACACCGACAAT
GCGTGAACAAGAGTAAAACCTCAACATAAGTTGGTGTCTGCGCTTTACTG
GTGAAGTAGTACTATTAATACTACTGTAGAGCTCCAGCTCGTCTGCTCTT
GCATATCTCACCCTCCTTGTTTTGAAAACTTGGTGGCTATTTCCATTCGG
CAATTTCATTGTTGTATCTCCTCCGCATAGACAAGCTTAGACTATAGAAC
GCACCCAGACCTGTCGATTTGGTCCATTTTCGTATAAATTTTTCGTTCCT
GTAAGAGTCGGCCTGACCAAATTTTTGGTCCCGAATTGAAAAAAACGGAT
TTGGTCCATTTTCGTATACGTTTTTCGTTCCCATAAGAGTCGGCCTAAGC
AAATTAAAAAAATCCAGCCCGTGGTCACAAGGTAGAAAAACACCATCCGG
AAGGAAAGAACGTACGACGCACTCTCCATGCAAAGGGGAAAACGGCAATA
GTCACAAAAATACTCGGAAAAAACGACATCTCCAAAGAAAAAAAGAAAAT
AATGACGCAGACAGTTGTTAGGTAACTGCGTGTGGCTACCGGGGCGCATG
CCCATCGAATAACGATTGAGCGAAGGGTCGTCTATTCAGTGAAAGCAAAA
AGACGAAAGGGGAACGAAACGAAACTAAACAAACGTCACATCAGAGAAAG
ACGACATGGCATCTACAAACCAAACGCGCGGAGCATACAAGTTCGCGCCA
CTTGTGGCTAAGCTACTATGGCTAGCGAACCAGCCCGAACACGCTTGCTT
TGGGCTATCCTGTCCTTGGCCCTTCCCGTCACGTTCGGGCGTACTACTGC
ATGCCGTAGGCCAGCCCTAACTTTCTCTGCAGCGATCCATTTCGACGTGA
AACGTTCCGCCTCTTGTTCCGCTCTTCTGCACCATTCCCCCTCGTTCTAG
GCTGCAGTCGTCCACTGGTCGGCGTTGATACCGAAAGCTCTTAGGTCGTC
CAGGAAACATCTCATCCACTCTTTTTCCTGCCCCCCCACGCACCCCGTGC
CCCCCACCAGTTCTCCAAACACCACGTACTTCGGCATTCTCGTACCGTCC
ATGCGCGCCACAAATCCCGCGAACAAGATCCGCCTCCTGCGTATAGTCAG
TCGCCTCGATCCTCTCACTTCCCGTCTTCATAAGCGTGTCCAGATAGGAA
ATCGGGTGGTCGGCGCGATTGTACTGTAGCCAACCGATGCAGCGAGTCAG
GAACCTGTGGTGGGCTCGGCGCAGCGTGTCGAAGTGGCACGCGCGCGCGG
GCTCCGCGTGGCGCAGCCGTACAGCATTGTCTCGAATACCTCGGCTCTTG
GCATACAGATTTTGAGCTCGAGGGGAGCGCTCGGTCGGTTGTACAAGTCC
GAGGGTGTACTTCCGGAAGCTGCACCATGCGTTGCGTATGCGCCGGTCGA
CCTCTATGGACAGGTCGACATTGTGCTTGACATTCCCCCCGAGGTAATGC
AAACTCGTTCGTTTGGTTGTAGACTTGACCAGCTGCCTCTACGCTGAACG
TGGCGGTGGACTCCGACATCCCCTCCGTGCGTAAGCACATGATCTCAGTC
TTGGCCTCTGACACGGTGAGGCCAAACGCCGCGCACACCACCACGATCAC
CCTCATCATCTTCCTGAGCTGCTCGGGCGATCGCGAGACGACTCCGGCAT
CGTCGGCGTAAGGCATGCCCCAAAGCGACGTCTCCAGGACTGGCTCTCCG
CTGGTTGCTCCCCCCCGCCACTTTTTTCTTCCTCAGGTGCAGCAAAGCGT
CCATGATGTCTTTGTCCCCACGATTAATGCGTTACTCGAGGCATCAATAC
CTTGAGGACTACTGACCCACAGCCGGCGGACTCTCGGGGGTGAATACCAC
TGGTACGCAATTGGGTGACCTGATAAAATTCGAGGCTTGACCCGATAGCG
GATGACGGTATAGATGGACTATGACGGCTTAGTCGCGGAAAGTGGGTGTT
GAGAATGTGCGGGGTGTCGCGGGGCGGGACGGCCGAACCTACCTCGCGAA
ACGAATTTCTCGGGCGCGGACGGGGACAAGGAAGGTTCGTTTAGCTGACC
ACAAGTAGGTGAGCAACAACAGCAATAACTCCATACTCATACAACCTTTC
CTTCTCTACCCTAAAGTGTATCAGTTTGTCAACATTAATTACAGATACTT
CGATATATTACGGGCCAGTAGTATACTTGTAGACTTGGCTGGGTCTCTGG
TGTAGGTTCTACGTTAGTCTGACCCCCGGATCCAGTTGTTGGGAAAATAT
TATTAATAACCACAGGCAGGATGGTAATGATGAGGTCCATCGGCTATAAA
AAAAGAATGTAGAACTCAATTCGATCAAGGCTGCTATTTATAGTTTGGTG
TACCCGGTCGCCCCGGTAGCTCAGAAGTAACCTCGTAACCTTCTGACACG
TTGGGACGTGAGTTCGACCCCGGTAGACGGGATTTTTCTCACTAAAAAAA
AAGCGTAACAAGTGGAGAACGATTAAATCGTTAGTACGCAAAATTTGACT
TCACGGTCGACGAGGGAAAGGAATTGCTGAATCCTTCTCGCGAGAAAAAT
TAAGGCACGCACCGCAGAAGGAAGGTGGATGAGAAATCCTGTGTGACCTT
CCACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACAAACTTGATGT
CCAGAATAAATGGGAAGAAAACACACTCACATACACATGACGATGTGTGT
AAGTGTACACCATGGCGGCGGGTCTCTACCCCAAATCATACTCTTGACCC
CTACCCGGCCAAAATTTGGGGAAGCCCACAATAAATCCCACGTGGGGTTT
TCGTTCGAATCAACAAATGTTCCCTATTTAAACGTAAATATTTCGACACA
CTACTGTATAACTATTTACAATTAACACAAGGTTTCCCCCGGACGGTGTG
AATGCTATTGTATATTAGGAAGGTTTTAAGATACGCTCAGCTTTTTCTAT
AAACAATACATTAGTATGTATAGTCATCGTATGTACATGCGATTGGCTTT
GGCAGGCAGGCGGCGGTTCACGTCCTGCGTCACATGCTCATCTCTCACCC
GGTACGCTTCAAGAGACCCGTATGAGAGTGTTGCTTGCTTCATTTAAATA
ATTCTGCTGTACAGCGGCCTACGAGAAAACCCTTGCCCTCATCTCATAAC
CCGGCATGGTTCAGGAAACCTCAAATGCAGCACCACGCTTGTCCTTCATC
GATCAAAGTCTAATGGCTACGCTTGACACCACCCCCCGCCCATGGTACCT
TGATCTCAGGAGACGAAAGGCGTTAGCGTTGGCCTGGGGGATTACAAGGA
CGGTTCCATTACGGTCGAGATGCCGCGCATGGAGATCTCGGATGCACAGG
CGAGTACCTGCGCAGCAGGGATACAAGGACTGCGTGCACTGCATGGCGCC
AGACCCCAAAACGAAATATTTTTTTCCCCAAGCGTCCTTGCTTTCACGGG
ACTTCCGTTTGAGGAACACAGAAATGCCATGATGAGCTAAATGCTTTGGA
AACACGTTCGAGGTGAAGGACCATTTATTTTTGTAGTGAACAGGACGGCG
GAAGGATCCCATGCGAAAAAAACAACAACCTTGGACCTTCCCTCCTACCA
GAGGTGCAACCCTTCTAGTATTACAGCTTGAGGGCGTCTCGCCGACCTTG
GGTGTCGATGAAAGGTACCATTATTAATTTCACACTTGGGGTTGGGCGAT
TGACGTCCCTGGTCTCTATTTTCACTTTGTGCATTCGAGAAGAACTCGCC
AAGATTCTCCAGAAGGCTTAGCTCAGACGCATCCCTTGTTACTGTGCTGT
CTCGAGAAAGATTTGAGGGAGGAAATATTTCTGTTGCAGGGTACCCGTCG
ACAACGATCGTCGTGCTAAGTGGGACTAAGTGGAATGAATGCGCCTGAGA
CTTGCCTATAGTTGGCTTAGTTTCGACTTTCTCGACATCGGGAGAGCGGA
TTGTTCTACCGGAGTCGCGTCTTGTTTTGGACACATTGACCTTCGGCCCC
AAGTGCTGCCTGTGCTACAGTCTGCTGGCTTACAAATACCCTTGCTGAAA
GACTCCAAGATTGCAAAGCCACACAAGAAGGCCTAAGCAGCAGATGCATC
GTTCTACTCGGCGCTTAGACAACGATCGGACGATCGGACCACGCACACCG
ACTCAAGACGTGCACAGATTCGAATTGTGGATTGACCCTACAGTTGTACG
GCATATACGTAATACGTTCCGGCCCGACAGCCATCCGTACGATTGGAAAC
CCCGTTTGCATTTCGCAGGTTGAAGCGGCACTGGCGGCGTCGAAGAAACC
GTACAGGCTCATCCCCGTGCGATTCGTTGAGGAAGGGGGCACCAAGATGG
GACACACGGTCATCATGGACTGGGAAGCAAAGGTAGCCACAGCCGCCGAA
CCTCGAACCATTGCTGCCGGTTGCCGCCGGTTGTGAATTCGGTTTCGCAT
ACACCAGCATCCTTGACCACAGGTGCCTTCACGACAACTGCCTTCTTTTT
CTGTTCGCGACTGCCGTTCCGCAGGTGAACGGCGAACTTGTCCACGGTGC
CAAGAAGGAAAACTTTGAGCTGGAGCTGAAGGTGATCCGCGTGCACCTTA
GCACAAAAACCAAGGTCCTTAGTAGGGGTTGCTTCAGGTACCATTTTCTG
GCTCCCCTGGCGGGGGCCTGCGGTGCCTTGTGAAAGCGAGCCGAGCAACG
CGACCAACAAGAGCGATGGCTCCGTGACTAGCCCTTCCCCATCTGACACT
GTCGTTTATATCAAAATATTTTTCATAGACGAAGAGTACACCCGATACAG
ACGCCGTCAACGGTGTAGATAACATTTTTCCCCCCTGACTGGGGAATGCT
CAGAAGGTCTAGGGGCGTTCTGATTTTTCTTTAAACTTCTATACATAGGA
GGGAGTGCTTCCTTCATATCTTCAGTACGATTTTTTTTTTTTTAATGCCC
GCGTGCGTCTGGCCATCAGGAAGGGCATACCGACCCGTGGAACACGTTTT
CGTCCAAGATTGCTGTAGGCATGGGACAGATGGAGACCAAGGTCTTTCCC
GTACTGTTCCCCAACGATTTCGAGGTATGCACGAGTTGGGTTATAACAAG
GCATGAATGAAGACGCGGCAGCAAGCACTGAGTGCCATTTTTTTTTTAAT
ATATATTCCTTGCTGTAAACAAGTCCGGCAAAATTTGGTCGTTCAGAGTT
TGTCGCCGTAAAGGCTTGACGCGTATAGAAGTAAGCGAAGCGCGACCCGC
TCACCGCCGACCGTATAGGTCCCAACATTTTTTTCGCTAGGTCGGCAACT
TTTTGCAGGCTTGGAAGAATAGCACCACAAAACATCTCGACCCCACACAG
GGTGACATCAAAAGGTTTGCGATCCGTACGCCCGTCGTATGGTCTGCTAT
GCTTCCACGGCTACGTCCTGCATGGCGCGAGAGAGAGAGAGTAGATCGAG
GGTTTGCGAGGTAAGGAGGCGTTAGTGCAGGCGGTGGTGAAGAGCATCGC
CAGGAGGGAAAGCAGGCCGCCGGAGACGAGGAGCGACGACGAGCTGCGAG
TTTTGTTGCGCCAGAAGGGGGAGGCGACCATGCAGGTAGATTAGGTGTTC
TCTCACGCTGCCGGCGGGTGGACGATTGGGGGGCGCGGGGATGTAACAAA
TTTGTCCCCGTTTTGGGAGGAAACGGCACGAAAATAGCCCCTACCAGGTA
CATATTTGACCAACCCCCTGGTCAAATGCGATGAATTCGGGGCAAGCTTG
CCGACCATGTAGGAGATCTTGTAGTCCTATCCCCGGAAGGGGCTGTTTTG
GGGACCTCCCCGGGACGAAGTCGTCGTAACCCCGCCCTCCCCAATCGTTG
AACCCCTCCTCGGTGAAATGCGTGCGCGGTTTCTCACATTTATCTATCCG
CCAAACGGACACCCCCCACCCCCCGGACAAGAAATCCCTCCTTGCTTATC
CTTTTTATCCCCCGAAAAGTAGAGTAAAAACATCCGTTTTGGGACAGATG
TCGGTTGGAATTAGAGACGTGTGTCAACGAGAGGCTTGATGCCCCTCCGC
CTTCGATAAAGCTTACTTCCTGTTTTCCAGCTCCCCGTGAGACGCTGGTC
GACCGAACGCCCAGATTTGCGTCACCGAACCACCAGAAGCTCTGTGGCCA
GCTGTGCTTGTTTGGCGACAACCGTTGAAGAGGCCAATCACGGTTGTCAT
TGTGCGGTATTCATCCGTTGTGTGTGTGTGTGTGCGTGCGTGTGTTTGAA
CTTTTTTCCGCCGCCTGCAGAGCCGGATGGATCAAGCGGTGGACGAGGCC
GTTAAAAAGGCCCTGCTAGCGTCGTGCAAGGTCGACGCCGACAAGGTGCG
ATCGAGCAAAGCCTCGATTTCGCGGGATCCTCGAGGATGAGCGATTGCTG
CGGTTACCTTGCACAAAAGGGAAAAAAAAAATGCCTCGAGATTATGAAAC
GCCACCGTCCTTGCAAAAAGAAAAGAAAATAATGCCTCGAGATTATGAAA
CCACCATTACTGACAACCACGTTCGCCACAGGTTTGCTTGCTGCGAAGGC
GGTGCTTGTAGCTAACCGATATCGAGTGCGAGCGATAGCCAAGGGAAAGT
ATTTGAAGGGTTTCACGATCCGACACCGCTCCGAGATCCCCGTCTTTCTC
CAAAACGAGTTGGGTACTGTGTCACACACTCGTTTCATTCTGGTCCTGCA
GGTGCTGAATGCGGTATCTTGGGCGAAGTTCGGCGAGAAGTCCACACTGG
AATTCAAGTGGAATTGCATCAAGGAAAAGATTGCATCGGAGGAGGGAATA
GAGCCCAGGGAAGTCACAGCATTGCTTCGGAGGGAGGCGAACGTCGTTTT
CTCTAAAAAGAAATGAAACCCCCAGGTTTCAAAAGTGTTGTCATGTGGCG
GTTACATTTTGAAACCCCCAGTTCTCAAAAGTGCTGTCATGTGGCGGTTA
CATTTTTTTTTTTTCCGGTAGCGCGCCAACGTGCAGAAGACGCTGTTGCG
CAAGACGTTGGTACTTGGAAATGTTTGCCTCTTTTTAGAGATCGGGGGAT
TTTTTTTGAAAAAATCTAGATATTAAGGATGTGGCAGACCGACCAGTATG
TTCACCGTAAATCAGTTTTCCCGAACAGTTGGCGAGATCGTGGTTATTCG
ACAACAAACCTTTTCGCCTTCCGGCTCGACCTTCTTTTCTCTTAACGTGG
ATTCCAACGATTGGGGGGGGGCGGGGATACGACGGTTCCGTCCCCGGGGA
GGTCACCAAAACAACCCCTTCCGGGGATCGTACTACATGATTCCCTAAAT
GGTCGGCAAGGTTGCCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1012:56202..65468+

>mRNA_A-nodosum_M_contig1012.4.2 ID=mRNA_A-nodosum_M_contig1012.4.2|Name=mRNA_A-nodosum_M_contig1012.4.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:56202..65468+ (Ascophyllum nodosum dioecious)
ATGGGCTTGGTTTTTGTGTCCATCGATTGCTTCGTGCTTCTGCCGTCGGC
ACCGGTCATACCCTTGTCGGCACGTAGATGGGCGAAGCCGCCTCCAGTCT
TCGCCTCACCAGCAGCGGCGAACGGAGCTCCAAGTTCGCAACGGCGGAGT
CAAAGTTCGCGCATGATGGCCGGTGCACTCGATGAGACGAAAGGCGTTAG
CGTTGGCCTGGGGGATTACAAGGACGGTTCCATTACGGTCGAGATGCCGC
GCATGGAGATCTCGGATGCACAGGTTGAAGCGGCACTGGCGGCGTCGAAG
AAACCGTACAGGCTCATCCCCGTGCGATTCGTTGAGGAAGGGGGCACCAA
GATGGGACACACGGTCATCATGGACTGGGAAGCAAAGGTGAACGGCGAAC
TTGTCCACGGTGCCAAGAAGGAAAACTTTGAGCTGGAGCTGAAGGAAGGG
CATACCGACCCGTGGAACACGTTTTCGTCCAAGATTGCTGTAGGCATGGG
ACAGATGGAGACCAAGGTCTTTCCCGTACTGTTCCCCAACGATTTCGAGA
TCGAGGGTTTGCGAGGTAAGGAGGCGTTAGTGCAGGCGGTGGTGAAGAGC
ATCGCCAGGAGGGAAAGCAGGCCGCCGGAGACGAGGAGCGACGACGAGCT
GCGAGTTTTGTTGCGCCAGAAGGGGGAGGCGACCATGCAGAGCCGGATGG
ATCAAGCGGTGGACGAGGCCGTTAAAAAGGCCCTGCTAGCGTCGTGCAAG
GTCGACGCCGACAAGGTGCTGAATGCGGTATCTTGGGCGAAGTTCGGCGA
GAAGTCCACACTGGAATTCAAGTGGAATTGCATCAAGGAAAAGATTGCAT
CGGAGGAGGGAATAGAGCCCAGGGAAGTCACAGCATTGCTTCGGAGGGAG
GCGAACGTCGTTTTCTCTAAAAAGAAATGA
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