mRNA_A-nodosum_M_contig1012.4.2 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: D7G2Q9_ECTSI (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q9_ECTSI) HSP 1 Score: 367 bits (941), Expect = 1.180e-122 Identity = 186/253 (73.52%), Postives = 217/253 (85.77%), Query Frame = 2 Query: 200 MAGALDETKGVSVGLGDYKDGSITVEMPRMEISDAQVEAALAASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKVNGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVFSKK 958
MAG LDETKGV+V L +YK G++TV +P +EI++AQVEAAL SKKPY+LIPVRFVEEGGTKMGHTVIM+W+AKV+G V GAKKENFELE KEGH +PW TF++K+AVGMGQMETKVFP FP DFEIEGLRGK+ALVQAVVK+IAR+E + PETRSDDE+R LR KGE T+++R D+AVDEAVKK LL+SC V+ADKVLNAVSWAKFGE+STL+FKWNCIKEKIA EGIEPR V LR EA V+ +K
Sbjct: 1 MAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQVEAALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRDEAEVILMEK 253
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A7S0VQZ5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQZ5_9CRYP) HSP 1 Score: 175 bits (444), Expect = 2.320e-47 Identity = 110/278 (39.57%), Postives = 156/278 (56.12%), Query Frame = 2 Query: 122 PPPVFASPAAANGAPSSQRRSQSSRMMAGALDETKGVSVGLGDYKDGSITVEMPRMEISDAQVEAALAASKKPYRLIPVRFVE-EGGTKMGHTVIMDWE--AKVNGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVV 946
PPP+ A+ AA RS M G K V LG Y S+T +PR E+S+A V L + K YRL RF + EGG +MGHTV++++ + G + G K +ELELKEG +PW+TF+S IAVGMGQ E K F V FP D+ + L+GK+ + VK I ++ ++ P+TR ++ R + EA ++ + VD+A++ L+ +C D K AVSWAKFGE+STL+ +W IKE I EEGI+ R++N V
Sbjct: 48 PPPLRAAHAAMG-------RSALGASMQGGSGGDKNAEVTLGQYTGLSVT--LPRAEVSEAAVAKILKENAKDYRLESARFTDGEGGARMGHTVLINFVGYSPETGAELKGTKANMYELELKEGQKEPWSTFASNIAVGMGQDEMKSFVVTFPGDYAVPALQGKQVRFETYVKKIMKKVAKDPDTRQEEVQRADAVAQLEAAIERNNLEKVDQALRLELMKTCAADTTKATEAVSWAKFGERSTLDLQWQIIKEAIGREEGIKDIGAVEEFLRDSNTV 316
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A4D9CVA6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVA6_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.030e-46 Identity = 107/257 (41.63%), Postives = 158/257 (61.48%), Query Frame = 2 Query: 233 SVGLGDYKDGSITVEMPRMEISDAQVEAAL-AASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKV------------NGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAV-DEAV---KKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVFS 952
+V LG YK+G+++ P+ +SDA+VEA + A+KK ++L PVRFVEEGGT+MGHTV+ DW+A G ++ A +NF LELKE ++P +F+ +A GMGQMETKVF V P IE RG A + +V+SI +E+ + RS +E + +R A +Q++ D A EA+ + LL + + + +K+ +VSWAKFGE S +FKW+ I+E IA+ EGI+ EV + L RE VV++
Sbjct: 13 AVTLGPYKNGALSFTYPKPTVSDAEVEAQVKTAAKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGMGQMETKVFEVAMPESATIESWRGVTAKIMLLVRSINIKENLAADGRSIEEKQAAVR----AELQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT 265
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A1Y1I108_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I108_KLENI) HSP 1 Score: 152 bits (383), Expect = 2.990e-38 Identity = 94/248 (37.90%), Postives = 137/248 (55.24%), Query Frame = 2 Query: 230 VSVGLGDYKDGSITVEMPRMEISDAQVEAALAASK-KPYRLIPVRFVEEGGTKMGHTVIMDWEAKVN-----GELVHGAKKENFELELKEGHTDPWNTFSSKIAV-GMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVFS 952
V + LG YKDG+I V + E+S+ ++E AL A K Y + F G K+GH V + +E K + G+L+ G K + FELEL+ DPW TF +I GMGQ E+K F + FP D++ LR A V I ++ + R + +R + AT + + + +D+ V++ LL + + D DKV +VSWAKFGEKS +FKWN + E++A E IE E A LRR+A V F+
Sbjct: 102 VKIALGPYKDGAIKVSAKKFEVSNDEIEKALKAKLGKTYDFERINFTGSGA-KIGHMVKVSFEGKYSDGPNAGQLIRGTKADFFELELQPREDDPWKTFVEQIVKNGMGQEESKSFTLTFPADYKAVPLRNVAARFTVTVHEIGIKKMLEKDPRPEAAIRADIEADLRATAERKTNDLIDQEVRRVLLETSEADVDKVAASVSWAKFGEKSLQDFKWNLLLEEVARNEKIEFEEAKAFLRRQATVNFT 348
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A388KP71_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP71_CHABU) HSP 1 Score: 152 bits (383), Expect = 1.540e-37 Identity = 92/248 (37.10%), Postives = 141/248 (56.85%), Query Frame = 2 Query: 230 VSVGLGDYKDGSITVEMPRMEISDAQVEAALAASK-KPYRLIPVRFVEEGGTKMGHTVIMDWEAKV-----NGELVHGAKKENFELELKEGHTDPWNTFSSKIA-VGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVFS 952
V V LG YK G I V+ + E++D +VE A + K + + F G K+GHTV +++E K +G+L+ G K + ++LELKE PW F +I GMGQ E+K F V+FP DF+ LR +A VK+I ++ P +TR + E R ++ + A + + + +D ++ ALL S + D DK+ + VSWAKFGE S +FKWN + E++A E I +V LRREA++ ++
Sbjct: 181 VKVVLGPYKGGVIKVKATKHEVTDEEVERAFKEKREKTHEFERINFTGSGA-KLGHTVKINFEGKYAEGPKSGQLIQGTKADMYDLELKERPDYPWKRFVEEITGTGMGQEESKTFMVVFPPDFKAPHLRNVKARFTVTVKAIGVKKELPKDTRPEHEQREEIKDELVAAEERKSNAQIDPEIRSALLESSEADVDKIASNVSWAKFGENSLKDFKWNLLMEEVARVENIAFEDVMPFLRREADISYT 427
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A7S1MV31_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MV31_HEMAN) HSP 1 Score: 126 bits (316), Expect = 1.370e-30 Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 2 Query: 437 VHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQAVDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVV 946
+ G K +ELELK H +PW+TF+ IAVGMGQ E K F V FP+D+ + L GK+ + VK I R ++ + R + E R EA+M+ VD+A+++ L+ +C D K AVSWAKFGEKSTL+ +W IKE I +EGI+ + R+ N V
Sbjct: 2 MKGTKANMYELELKGDHKEPWSTFTENIAVGMGQDEMKSFVVTFPDDYAVPALVGKQVRFETYVKKIMNRVAKEADARPEAEQRAEAIAALEASMERSNLDKVDQAIRQELMKTCTADTTKATEAVSWAKFGEKSTLDLQWQIIKEAIGRKEGIKDIDAIENFLRQKNTV 171
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A7R9Y821_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y821_9VIRI) HSP 1 Score: 124 bits (310), Expect = 8.030e-29 Identity = 86/254 (33.86%), Postives = 134/254 (52.76%), Query Frame = 2 Query: 230 VSVGLGDYKDGSITVEMPRMEISDAQVEAALAASK-KPYRLIPVRFVEEGGTKMGHTVIMDWEAKVN------GELVHGAKKENFELELKEGHTDPWNTFSSKIA-VGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDELRVLLRQKGEATMQSRMDQA----VDEAVKKALLASCKVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPRE-VTALLRREANVVFS 952
V V L +YK G++ V + +A V+A L K + L+ V F G MGHTV ++ A G+ V G ++ ++LK + P N F I GMGQME+K FPV FP+D++ E LRG L ++K IA + P T +D R LR++ A + +A D A++ ALL C+VD K + +V+WAKFGE+S ++ ++ I E+I EG+ ++ + LR EA++ ++
Sbjct: 7 VDVKLCEYKGGALCVRADKSVADEAAVDAELEEEMAKEFELVRVNFTGSGAA-MGHTVKLEMSATFGPGHQHAGQPVPGMTVDDLSVDLKTSNPFPLNHFVQAIVEAGMGQMESKTFPVAFPDDYQSERLRGVTCLFTIMIKEIAEKRPLPARTEAD---RATLREEIAARHDEQARRASAKRADLAIRNALLDGCEVDTQKTVESVAWAKFGEESIRDYAYSMILEEIGGREGLATQDDIKRFLREEASITWA 256
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A4D9DGH6_9STRA (ABC transporter domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGH6_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 6.930e-16 Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 2 Query: 200 MAGALDETKGV--------SVGLGDYKDGSITVEMPRMEISDAQVEAAL-AASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKV------------NGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGM 532
++GAL++ G +V LG YK+G+++ P+ +SDA+VEA + A+KK ++L PVRFVEEGGT+MGHTV+ DW+A G ++ A +NF LELKE ++P +F+ +A GM
Sbjct: 54 LSGALNDMTGEMASTSAKGAVTLGPYKNGALSFTYPKPTVSDAEVEAQVKTAAKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGM 185
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A1V5HNE3_9BACT (Trigger factor n=1 Tax=Tenericutes bacterium ADurb.BinA124 TaxID=1852921 RepID=A0A1V5HNE3_9BACT) HSP 1 Score: 74.7 bits (182), Expect = 9.030e-11 Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 236 VGLGDYKDGSITVEMPRMEISDAQVEAALAASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKVNGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARR 646
V LG Y + V+ E+ +++VEAA+ + + VEEG ++GHT + D+E +V+G L G +N+ LE+ G P F ++ VGM Q E + V FP+D++ E L+GKEA+ + + I +R
Sbjct: 118 VVLGKYF--GVEVKKDSTEVEESEVEAAINRDLRSKS--DLELVEEGSLELGHTAVFDFEGRVDGVLFEGGTAKNYSLEIGSGQFIPG--FEEQM-VGMKQEEERDLKVKFPDDYQAENLKGKEAVFKVKLHEIKKR 247
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Match: A0A257DIN3_9SPHN (Trigger factor n=8 Tax=Sphingomonadales TaxID=204457 RepID=A0A257DIN3_9SPHN) HSP 1 Score: 72.4 bits (176), Expect = 5.830e-10 Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 2 Query: 266 ITVEMPRMEISDAQVEAA---LAASKKPYRLIPVRFVEEGGTKMGHTVIMDWEAKVNGELVHGAKKENFELELKEGHTDPWNTFSSKIAVGMGQMETKVFPVLFPNDFEIEGLRGKEALVQAVVKSIARRESRPPETRSDDEL 685
IT+E +E+SDAQV+ + LAA +K + ++ KMG +V++D+E KV+G G K E +EL G P F ++ VG+ + KV V FP D+ E L+GK A VV + + P E ++DD L
Sbjct: 97 ITLERMTVEVSDAQVDESILKLAAGQKSFEAADKKYA----AKMGDSVVIDFEGKVDGVPFEGGKGEGMAVELGSGQLIPG--FEDQL-VGVKANDEKVLNVTFPEDYNAENLKGKPATFDIVVTEVRK----PVEAKADDNL 228 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1012.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1012.4.2 >prot_A-nodosum_M_contig1012.4.2 ID=prot_A-nodosum_M_contig1012.4.2|Name=mRNA_A-nodosum_M_contig1012.4.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=310bp MGLVFVSIDCFVLLPSAPVIPLSARRWAKPPPVFASPAAANGAPSSQRRSback to top mRNA from alignment at A-nodosum_M_contig1012:56202..65468+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1012.4.2 ID=mRNA_A-nodosum_M_contig1012.4.2|Name=mRNA_A-nodosum_M_contig1012.4.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9267bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:56202..65468+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1012:56202..65468+ >mRNA_A-nodosum_M_contig1012.4.2 ID=mRNA_A-nodosum_M_contig1012.4.2|Name=mRNA_A-nodosum_M_contig1012.4.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:56202..65468+ (Ascophyllum nodosum dioecious)back to top |