mRNA_A-nodosum_M_contig10113.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10113.2.1
Unique NamemRNA_A-nodosum_M_contig10113.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10113.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10113contigA-nodosum_M_contig10113:1598..2060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.2252553-CDS-A-nodosum_M_contig10113:1597..16931680866370.2252553-CDS-A-nodosum_M_contig10113:1597..1693Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10113 1598..1693 +
1680866370.234757-CDS-A-nodosum_M_contig10113:1991..20601680866370.234757-CDS-A-nodosum_M_contig10113:1991..2060Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10113 1992..2060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10113.2.1prot_A-nodosum_M_contig10113.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10113 1598..2060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10113.2.1

>prot_A-nodosum_M_contig10113.2.1 ID=prot_A-nodosum_M_contig10113.2.1|Name=mRNA_A-nodosum_M_contig10113.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
FKSRAWRQTWRAWSASWRSSTASAGKASLFVEINDPATLVENLGSAVLAL
DPHVP
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mRNA from alignment at A-nodosum_M_contig10113:1598..2060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10113.2.1 ID=mRNA_A-nodosum_M_contig10113.2.1|Name=mRNA_A-nodosum_M_contig10113.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=463bp|location=Sequence derived from alignment at A-nodosum_M_contig10113:1598..2060+ (Ascophyllum nodosum dioecious)
TTTAAAAGTCGAGCATGGCGGCAGACGTGGAGGGCATGGAGCGCAAGCTG
GAGGAGCTCCACCGCCTCAGCAGGGAAGGCTTCTCTTTTTGTGGAGGTTC
GTTTAGGGCAAGCGTTAAATCATCCGCGCAGTTGCCGCCGCGAGAGTCGG
TCGGCGGCCCAAAAATACAGGACGGATGTGAAAACTTGGCTGCTTGCCCG
CAGCGCGAGGCCTCCGCGCGGGTCATCAGCGAGATCGATTTCTTTGGTCT
GTGAAATACATATATATATATATATATATATATATATATATATATATTTA
TTTATTTATTTTTCTGAAGCCCATATTTTTGTGACAAAAGCTGCTTTCCC
GCGCGTGAACCCGTTTTTTTCGTGATGAATGTACTCTCGAGCAGATTAAC
GATCCTGCCACCCTGGTGGAAAATCTCGGCAGCGCGGTGCTTGCACTGGA
CCCACACGTTCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10113:1598..2060+

>mRNA_A-nodosum_M_contig10113.2.1 ID=mRNA_A-nodosum_M_contig10113.2.1|Name=mRNA_A-nodosum_M_contig10113.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig10113:1598..2060+ (Ascophyllum nodosum dioecious)
TTTAAAAGTCGAGCATGGCGGCAGACGTGGAGGGCATGGAGCGCAAGCTG
GAGGAGCTCCACCGCCTCAGCAGGGAAGGCTTCTCTTTTTGTGGAGATTA
ACGATCCTGCCACCCTGGTGGAAAATCTCGGCAGCGCGGTGCTTGCACTG
GACCCACACGTTCCA
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