mRNA_A-nodosum_M_contig10113.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10113.14.1
Unique NamemRNA_A-nodosum_M_contig10113.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10113.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10113contigA-nodosum_M_contig10113:11485..11652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size102
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.305903-UTR-A-nodosum_M_contig10113:11484..114881680866370.305903-UTR-A-nodosum_M_contig10113:11484..11488Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10113 11485..11488 -
1680866370.3409798-UTR-A-nodosum_M_contig10113:11599..116521680866370.3409798-UTR-A-nodosum_M_contig10113:11599..11652Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10113 11600..11652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.3190722-CDS-A-nodosum_M_contig10113:11488..115651680866370.3190722-CDS-A-nodosum_M_contig10113:11488..11565Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10113 11489..11565 -
1680866370.3299255-CDS-A-nodosum_M_contig10113:11574..115991680866370.3299255-CDS-A-nodosum_M_contig10113:11574..11599Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10113 11575..11599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10113.14.1prot_A-nodosum_M_contig10113.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10113 11489..11599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10113.14.1

>prot_A-nodosum_M_contig10113.14.1 ID=prot_A-nodosum_M_contig10113.14.1|Name=mRNA_A-nodosum_M_contig10113.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=34bp
MAYRFYVVSPLHRQRFTAVQQCIFENKEKSDRI*
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mRNA from alignment at A-nodosum_M_contig10113:11485..11652-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10113.14.1 ID=mRNA_A-nodosum_M_contig10113.14.1|Name=mRNA_A-nodosum_M_contig10113.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at A-nodosum_M_contig10113:11485..11652- (Ascophyllum nodosum dioecious)
CACATCCACACTACTACTCGCAGGTTTACTCCAGGACCTACAGAGCTGCC
TTAATGGCGTATCGATTCTACGTGGTGTGTGGAACAGCGCCGCTGCACCG
GCAGAGGTTCACCGCGGTGCAGCAGTGCATTTTTGAAAACAAAGAAAAAT
CTGACCGCATCTAAACCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10113:11485..11652-

>mRNA_A-nodosum_M_contig10113.14.1 ID=mRNA_A-nodosum_M_contig10113.14.1|Name=mRNA_A-nodosum_M_contig10113.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig10113:11485..11652- (Ascophyllum nodosum dioecious)
ATGGCGTATCGATTCTACGTGGTGTCGCCGCTGCACCGGCAGAGGTTCAC
CGCGGTGCAGCAGTGCATTTTTGAAAACAAAGAAAAATCTGACCGCATCT
AA
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