mRNA_A-nodosum_M_contig101.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig101.11.1
Unique NamemRNA_A-nodosum_M_contig101.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig101.11.1 vs. uniprot
Match: D7G085_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G085_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 7.850e-74
Identity = 134/290 (46.21%), Postives = 179/290 (61.72%), Query Frame = 1 
Query:    1 LMSRTEEELPLS--------GNHKKAEHRDQRLALGLAAFALLACAVSSFPPVARQWHPIYYPSLEMEQRGWAWLSTNSIWMAIPLIWTLFYIENTPCVQLLCLLGVVSWAYAGLVFISQAIRGQLPWTSVFDAVAIAVLFLLSLKASW-GFGP-SEIPGSNYRRTWKHMLRKCVLIAACLQLFGSFVACWLPGLPAAPK-SGRESAPWEWNSVVILAMTLTVLWAAFVSSGEFVDVTKQAACAWCALFFAGNFFLAAFSWPALGLVGCSLTISIILALDVSFMIVAAVV 837
            +M+  EE LPL         GNH    H  ++LALG     LL  A+  FP V   WHP YY  L  EQRGW WL  N++W+A+ L+WTL +++N PCV   CLL  V W Y  LV +SQA RGQLP  ++ DA+    + ++  +A+W G    S+   S+   TW+ +LRK  L++A   LF +F+ C    LP  P  S RESAPWEWNS ++ AMTL VLWAAF++ G  VD TK+AACAW AL F+G+F L +FSW ALGL   S+T S++LA++ + +  AAVV
Sbjct:    1 MMAAPEETLPLRVSVNGDGPGNHDG--HHGKKLALGATVAYLLVFALICFPAVVPLWHPTYYAELGAEQRGWTWLGANALWLALALLWTLLHLDNGPCVATACLLCSVLWFYLSLVLLSQACRGQLPLMAIADALVHLTMLIVCFRAAWVGVAKKSQKARSDGSSTWRRVLRKWALVSASATLFAAFLGCCSSSLPLIPPVSERESAPWEWNSAILFAMTLAVLWAAFLTRGGLVDETKRAACAWIALSFSGSFVLCSFSWQALGLDARSVTTSVVLAVETAVLAAAAVV 288
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig101.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G085_ECTSI7.850e-7446.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig101contigA-nodosum_M_contig101:294010..295730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1721
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_000290.1
Cds size837
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866368.4295022-UTR-A-nodosum_M_contig101:294009..2948901680866368.4295022-UTR-A-nodosum_M_contig101:294009..294890Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig101 294010..294890 -
1680866368.4498801-UTR-A-nodosum_M_contig101:295727..2957301680866368.4498801-UTR-A-nodosum_M_contig101:295727..295730Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig101 295728..295730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866368.440438-CDS-A-nodosum_M_contig101:294890..2957271680866368.440438-CDS-A-nodosum_M_contig101:294890..295727Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig101 294891..295727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig101.11.1prot_A-nodosum_M_contig101.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig101 294891..295727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig101.11.1

>prot_A-nodosum_M_contig101.11.1 ID=prot_A-nodosum_M_contig101.11.1|Name=mRNA_A-nodosum_M_contig101.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=279bp
MSRTEEELPLSGNHKKAEHRDQRLALGLAAFALLACAVSSFPPVARQWHP
IYYPSLEMEQRGWAWLSTNSIWMAIPLIWTLFYIENTPCVQLLCLLGVVS
WAYAGLVFISQAIRGQLPWTSVFDAVAIAVLFLLSLKASWGFGPSEIPGS
NYRRTWKHMLRKCVLIAACLQLFGSFVACWLPGLPAAPKSGRESAPWEWN
SVVILAMTLTVLWAAFVSSGEFVDVTKQAACAWCALFFAGNFFLAAFSWP
ALGLVGCSLTISIILALDVSFMIVAAVV*
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mRNA from alignment at A-nodosum_M_contig101:294010..295730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig101.11.1 ID=mRNA_A-nodosum_M_contig101.11.1|Name=mRNA_A-nodosum_M_contig101.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1721bp|location=Sequence derived from alignment at A-nodosum_M_contig101:294010..295730- (Ascophyllum nodosum dioecious)
TTAATGTCAAGAACGGAAGAAGAGCTCCCGCTCAGCGGTAACCACAAGAA
GGCAGAACACCGGGACCAGCGACTCGCCCTGGGCCTTGCTGCCTTCGCTT
TGCTCGCATGCGCCGTAAGCTCCTTTCCTCCTGTTGCTCGACAGTGGCAT
CCGATATACTACCCTTCGCTAGAAATGGAGCAACGAGGCTGGGCCTGGCT
AAGCACAAACTCGATCTGGATGGCAATACCATTGATATGGACGCTCTTTT
ACATTGAAAATACACCGTGTGTACAGTTACTGTGTCTTCTGGGTGTAGTC
TCTTGGGCATACGCGGGACTGGTTTTCATCAGCCAGGCCATCAGGGGTCA
ACTCCCGTGGACTAGCGTCTTCGACGCCGTTGCGATCGCGGTGCTTTTTT
TGCTCTCCCTAAAGGCCTCCTGGGGATTTGGTCCTTCCGAAATACCTGGA
TCTAATTACCGACGTACCTGGAAACACATGCTCCGCAAGTGTGTCCTTAT
CGCAGCCTGTCTCCAACTGTTTGGATCCTTCGTGGCATGCTGGCTCCCCG
GCCTCCCGGCCGCGCCCAAGTCGGGAAGAGAGTCCGCTCCGTGGGAGTGG
AATTCTGTCGTGATTTTGGCCATGACGCTGACTGTCCTTTGGGCGGCATT
CGTTTCGAGTGGAGAGTTCGTTGACGTGACGAAACAGGCAGCGTGCGCAT
GGTGCGCGCTCTTCTTCGCGGGGAACTTCTTTCTTGCTGCCTTCTCATGG
CCGGCCCTAGGACTAGTTGGATGCAGCTTGACCATCTCGATCATTCTTGC
TTTGGACGTGAGCTTCATGATTGTTGCCGCCGTTGTCTGAGTTGCGAATA
ATTGTGGGAAGAGGCTGGCGAGGTCTGCTGCTTTGGGATGCCGGGATGTC
GAAGTAGTATAGCATTGTTATGGTGGTTCGCTGTCGTTACGTCGTCGACG
ACAAGGGAAGAGTCGTTCACGAAGTTTGGATAGGACCAAATGATCATAGG
CTCAATGGGCAGGACAGAGAAGACAGGTCTGAAAAATATCTGATGCGGTT
TTAGTTGTCGCGAAAGCTTTTGCGATATTTGCGTGCGAAGGATAAACCAA
GGGGGGAAGGACTCGATGTGGAACACCACTGGCTGTAAGTTGAAGACTGC
CCTATGGTTAGAGCACTTGATGGCAGAGGGGAGAAATAGCGGATGGTGAT
GTTGTCAGCCAATCTACAGTTACCGTAGTCTCCAATCCGTGGTTGATTGC
ATCATCAACTCCTCAGGAATGAGGGACCACGTACGCACGTCATATCAGGG
GAAGAGAAAAATCGTCGTCTGAACAAAATCTTTGCCTGAAATCAGGATGC
GAAACCTTGTGGTGTTTTGGGTTGTACATGTCGTGTTGGGAGCGAAGGCC
TTGCGTGACGAGCGCTCCCGAAATTCGTAGGCTATCCGTGTTACAACCTC
TTGAATAAGCAGATTGAATACCAAACGTAGGTTCAAGTCCAAAACAACAC
TTTCCCTGTCATAAAAAAGCGGACTTAGTTTTCCTAACTTACTGGTAGTA
ATATCACGTTGTAACTTGTAAGGCTCTAGCTCTATATATTGCCTGGTATT
TATTTATTTTTTAATGTTTTATTAATGATCCTGTTAGGGCTGTTGGAAAA
CACGATTTTAGTTCTATTGGGAGATCTCGAGAAAGGACTCAGAAGAAGAG
CGTTCGTTTTGTCTTTTTTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig101:294010..295730-

>mRNA_A-nodosum_M_contig101.11.1 ID=mRNA_A-nodosum_M_contig101.11.1|Name=mRNA_A-nodosum_M_contig101.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=837bp|location=Sequence derived from alignment at A-nodosum_M_contig101:294010..295730- (Ascophyllum nodosum dioecious)
ATGTCAAGAACGGAAGAAGAGCTCCCGCTCAGCGGTAACCACAAGAAGGC
AGAACACCGGGACCAGCGACTCGCCCTGGGCCTTGCTGCCTTCGCTTTGC
TCGCATGCGCCGTAAGCTCCTTTCCTCCTGTTGCTCGACAGTGGCATCCG
ATATACTACCCTTCGCTAGAAATGGAGCAACGAGGCTGGGCCTGGCTAAG
CACAAACTCGATCTGGATGGCAATACCATTGATATGGACGCTCTTTTACA
TTGAAAATACACCGTGTGTACAGTTACTGTGTCTTCTGGGTGTAGTCTCT
TGGGCATACGCGGGACTGGTTTTCATCAGCCAGGCCATCAGGGGTCAACT
CCCGTGGACTAGCGTCTTCGACGCCGTTGCGATCGCGGTGCTTTTTTTGC
TCTCCCTAAAGGCCTCCTGGGGATTTGGTCCTTCCGAAATACCTGGATCT
AATTACCGACGTACCTGGAAACACATGCTCCGCAAGTGTGTCCTTATCGC
AGCCTGTCTCCAACTGTTTGGATCCTTCGTGGCATGCTGGCTCCCCGGCC
TCCCGGCCGCGCCCAAGTCGGGAAGAGAGTCCGCTCCGTGGGAGTGGAAT
TCTGTCGTGATTTTGGCCATGACGCTGACTGTCCTTTGGGCGGCATTCGT
TTCGAGTGGAGAGTTCGTTGACGTGACGAAACAGGCAGCGTGCGCATGGT
GCGCGCTCTTCTTCGCGGGGAACTTCTTTCTTGCTGCCTTCTCATGGCCG
GCCCTAGGACTAGTTGGATGCAGCTTGACCATCTCGATCATTCTTGCTTT
GGACGTGAGCTTCATGATTGTTGCCGCCGTTGTCTGA
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