Homology
BLAST of mRNA_A-nodosum_M_contig101.11.1 vs. uniprot
Match:
D7G085_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G085_ECTSI)
HSP 1 Score: 246 bits (628), Expect = 7.850e-74
Identity = 134/290 (46.21%), Postives = 179/290 (61.72%), Query Frame = 1
Query: 1 LMSRTEEELPLS--------GNHKKAEHRDQRLALGLAAFALLACAVSSFPPVARQWHPIYYPSLEMEQRGWAWLSTNSIWMAIPLIWTLFYIENTPCVQLLCLLGVVSWAYAGLVFISQAIRGQLPWTSVFDAVAIAVLFLLSLKASW-GFGP-SEIPGSNYRRTWKHMLRKCVLIAACLQLFGSFVACWLPGLPAAPK-SGRESAPWEWNSVVILAMTLTVLWAAFVSSGEFVDVTKQAACAWCALFFAGNFFLAAFSWPALGLVGCSLTISIILALDVSFMIVAAVV 837
+M+ EE LPL GNH H ++LALG LL A+ FP V WHP YY L EQRGW WL N++W+A+ L+WTL +++N PCV CLL V W Y LV +SQA RGQLP ++ DA+ + ++ +A+W G S+ S+ TW+ +LRK L++A LF +F+ C LP P S RESAPWEWNS ++ AMTL VLWAAF++ G VD TK+AACAW AL F+G+F L +FSW ALGL S+T S++LA++ + + AAVV
Sbjct: 1 MMAAPEETLPLRVSVNGDGPGNHDG--HHGKKLALGATVAYLLVFALICFPAVVPLWHPTYYAELGAEQRGWTWLGANALWLALALLWTLLHLDNGPCVATACLLCSVLWFYLSLVLLSQACRGQLPLMAIADALVHLTMLIVCFRAAWVGVAKKSQKARSDGSSTWRRVLRKWALVSASATLFAAFLGCCSSSLPLIPPVSERESAPWEWNSAILFAMTLAVLWAAFLTRGGLVDETKRAACAWIALSFSGSFVLCSFSWQALGLDARSVTTSVVLAVETAVLAAAAVV 288
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig101.11.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 7.85e-74 / Id = 46.21 Sequence D7G085_ECTSI
Match Name E-value Identity Description
D7G085_ECTSI 7.850e-74 46.21 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1721 Hectar predicted targeting category signal anchor Exons 1 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-24_000290.1 Cds size 837
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866368.4295022-UTR-A-nodosum_M_contig101:294009..294890 1680866368.4295022-UTR-A-nodosum_M_contig101:294009..294890 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig101 294010..294890 - 1680866368.4498801-UTR-A-nodosum_M_contig101:295727..295730 1680866368.4498801-UTR-A-nodosum_M_contig101:295727..295730 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig101 295728..295730 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866368.440438-CDS-A-nodosum_M_contig101:294890..295727 1680866368.440438-CDS-A-nodosum_M_contig101:294890..295727 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig101 294891..295727 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig101.11.1
>prot_A-nodosum_M_contig101.11.1 ID=prot_A-nodosum_M_contig101.11.1|Name=mRNA_A-nodosum_M_contig101.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=279bp
MSRTEEELPLSGNHKKAEHRDQRLALGLAAFALLACAVSSFPPVARQWHP back to top mRNA from alignment at A-nodosum_M_contig101:294010..295730-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig101.11.1 ID=mRNA_A-nodosum_M_contig101.11.1|Name=mRNA_A-nodosum_M_contig101.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1721bp|location=Sequence derived from alignment at A-nodosum_M_contig101:294010..295730- (Ascophyllum nodosum dioecious)TTA ATGTCAAGAACGGAAGAAGAGCTCCCGCTCAGCGGTAACCACAAGAA
GGCAGAACACCGGGACCAGCGACTCGCCCTGGGCCTTGCTGCCTTCGCTT
TGCTCGCATGCGCCGTAAGCTCCTTTCCTCCTGTTGCTCGACAGTGGCAT
CCGATATACTACCCTTCGCTAGAAATGGAGCAACGAGGCTGGGCCTGGCT
AAGCACAAACTCGATCTGGATGGCAATACCATTGATATGGACGCTCTTTT
ACATTGAAAATACACCGTGTGTACAGTTACTGTGTCTTCTGGGTGTAGTC
TCTTGGGCATACGCGGGACTGGTTTTCATCAGCCAGGCCATCAGGGGTCA
ACTCCCGTGGACTAGCGTCTTCGACGCCGTTGCGATCGCGGTGCTTTTTT
TGCTCTCCCTAAAGGCCTCCTGGGGATTTGGTCCTTCCGAAATACCTGGA
TCTAATTACCGACGTACCTGGAAACACATGCTCCGCAAGTGTGTCCTTAT
CGCAGCCTGTCTCCAACTGTTTGGATCCTTCGTGGCATGCTGGCTCCCCG
GCCTCCCGGCCGCGCCCAAGTCGGGAAGAGAGTCCGCTCCGTGGGAGTGG
AATTCTGTCGTGATTTTGGCCATGACGCTGACTGTCCTTTGGGCGGCATT
CGTTTCGAGTGGAGAGTTCGTTGACGTGACGAAACAGGCAGCGTGCGCAT
GGTGCGCGCTCTTCTTCGCGGGGAACTTCTTTCTTGCTGCCTTCTCATGG
CCGGCCCTAGGACTAGTTGGATGCAGCTTGACCATCTCGATCATTCTTGC
TTTGGACGTGAGCTTCATGATTGTTGCCGCCGTTGTCTGA GTTGCGAATA
ATTGTGGGAAGAGGCTGGCGAGGTCTGCTGCTTTGGGATGCCGGGATGTC
GAAGTAGTATAGCATTGTTATGGTGGTTCGCTGTCGTTACGTCGTCGACG
ACAAGGGAAGAGTCGTTCACGAAGTTTGGATAGGACCAAATGATCATAGG
CTCAATGGGCAGGACAGAGAAGACAGGTCTGAAAAATATCTGATGCGGTT
TTAGTTGTCGCGAAAGCTTTTGCGATATTTGCGTGCGAAGGATAAACCAA
GGGGGGAAGGACTCGATGTGGAACACCACTGGCTGTAAGTTGAAGACTGC
CCTATGGTTAGAGCACTTGATGGCAGAGGGGAGAAATAGCGGATGGTGAT
GTTGTCAGCCAATCTACAGTTACCGTAGTCTCCAATCCGTGGTTGATTGC
ATCATCAACTCCTCAGGAATGAGGGACCACGTACGCACGTCATATCAGGG
GAAGAGAAAAATCGTCGTCTGAACAAAATCTTTGCCTGAAATCAGGATGC
GAAACCTTGTGGTGTTTTGGGTTGTACATGTCGTGTTGGGAGCGAAGGCC
TTGCGTGACGAGCGCTCCCGAAATTCGTAGGCTATCCGTGTTACAACCTC
TTGAATAAGCAGATTGAATACCAAACGTAGGTTCAAGTCCAAAACAACAC
TTTCCCTGTCATAAAAAAGCGGACTTAGTTTTCCTAACTTACTGGTAGTA
ATATCACGTTGTAACTTGTAAGGCTCTAGCTCTATATATTGCCTGGTATT
TATTTATTTTTTAATGTTTTATTAATGATCCTGTTAGGGCTGTTGGAAAA
CACGATTTTAGTTCTATTGGGAGATCTCGAGAAAGGACTCAGAAGAAGAG
CGTTCGTTTTGTCTTTTTTGG back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig101:294010..295730-
>mRNA_A-nodosum_M_contig101.11.1 ID=mRNA_A-nodosum_M_contig101.11.1|Name=mRNA_A-nodosum_M_contig101.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=837bp|location=Sequence derived from alignment at A-nodosum_M_contig101:294010..295730- (Ascophyllum nodosum dioecious) back to top