mRNA_A-nodosum_M_contig10.90.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.90.1
Unique NamemRNA_A-nodosum_M_contig10.90.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: D7FM11_ECTSI (mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM11_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 5.040e-118
Identity = 186/300 (62.00%), Postives = 231/300 (77.00%), Query Frame = 1 
Query:  901 RRALNDSLMASADPAIKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTEARIGGYIDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKLEGEDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLPILLPRSMVPHLLDVIIQDYESTGCRFLPPAFRETEFRDFRAWGET 1800
            RRA  D ++AS+DP +K++RMAFKK+YQG LNKL+ +PS+V  V R+I  KA APL +AR  G+  +A+EF  +N+ADKLV Y+ERDHFS +SYRMAFPLACVAVDLM EH  L+ELFLG L+  CPSAVPAL+F+TAG+SD +VM+LLG+   ED+  +LNRTKGL+VLMAA MQ                 GW W+ RF+NG+  YV++GN PPVP GPVLEWFLKV GFELQR YG+AF KVV  IKT++LPILLP+S+VPHLLDV+++DYE  G RFLPPA R+ EFR FR WG+T
Sbjct:  618 RRAAVDQILASSDPGVKKIRMAFKKSYQGCLNKLSATPSTVRQVARDIQVKAEAPLADARRAGWEAKAKEFLFFNLADKLVDYSERDHFSGDSYRMAFPLACVAVDLMEEHAGLSELFLGTLYLRCPSAVPALSFDTAGLSDREVMALLGQTRDEDLPTFLNRTKGLVVLMAAVMQ-----------------GWCWLARFVNGMAGYVKKGNPPPVPAGPVLEWFLKVVGFELQRHYGRAFDKVVQAIKTEILPILLPKSVVPHLLDVVMEDYEGRGRRFLPPAGRDKEFRHFRVWGDT 900
[Close]
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: UPI000C6D6ACB (nucleoporin GLE1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D6ACB)

HSP 1 Score: 87.4 bits (215), Expect = 2.560e-15
Identity = 70/231 (30.30%), Postives = 107/231 (46.32%), Query Frame = 1 
Query: 1108 EFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKL--EG--EDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLPIL----LPRSMVP-HLLDVIIQDYESTGCRFLPPAFRETEF 1773
            ++F  ++  K +V       S+     AFPLA + V L  ++  L +LFL  L+  CP  VP       G S+      LG +  EG  E    +L R  G++ L AA +QTP   +   PHP  +   W W+ R LN       R +     T  +L  FL+VAG+ +Q+ YGK FQK++  +  + LP +    LP S  P   L+  +++Y   G    P    ++ F
Sbjct:   61 KYFCLDLLAKKIVGQGESQISSRP-EAAFPLAALTVFLCQKYPDLLKLFLAHLYKKCPYLVPYYIPRKEGQSEDDYYRQLGYVYSEGVIEKQVMFLKRMSGIVRLYAAVIQTPP--ILNSPHPHGMKHAWIWLARLLN----LEPRSDI----TATILVDFLEVAGYVMQKTYGKQFQKLIEALAIEFLPKIKQATLPGSGGPLQRLESFLEEYFKKGTVPQPSGILDSTF 280
[Close]
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: A0A1V9YX05_9STRA (mRNA export factor GLE1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YX05_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.330e-15
Identity = 72/263 (27.38%), Postives = 114/263 (43.35%), Query Frame = 1 
Query:  907 ALNDSLMASADPAIKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTEARIGG--YIDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLG--------KLEGEDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLP 1665
            A N  ++ S+DP IK++RM  KK    + N++A +P+S+ LV++    K  + LT+AR  G  Y++ + +     +  ++ V  E         R  FPLA V          L ++FL  +   CP  +P         S  +    +G        K + E    Y  R    + L AA MQT        P  L + + W W+    NG          P   T  +L   L+ AGF +  RY + F+K++ +I+ DVLP
Sbjct:  255 AANQPILDSSDPNIKKIRMNVKKQIGEACNQVANTPNSIQLVVK----KLCSVLTDARNAGLEYLNFSLDILAARITSQVKVITE--------IRSCFPLAHVLTMCCIHSPELVDIFLAHINKMCPYTIPHEPVKLPSESIEEYTKKIGMEWDDDDGKKKLETTEKYTMRMNIAVALQAAAMQTTPYDGSPQPKGLTIDDCWAWLANIANG---------KPHAFTASILTSLLETAGFAMILRYRRQFEKLLQLIRKDVLP 496
[Close]
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: UPI00188817BE (LOW QUALITY PROTEIN: nucleoporin GLE1-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI00188817BE)

HSP 1 Score: 85.9 bits (211), Expect = 9.840e-14
Identity = 63/204 (30.88%), Postives = 97/204 (47.55%), Query Frame = 1 
Query: 1102 AQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLG-KLEGEDM---TAYLNRTKGLIVLMAATMQTPSRRLGELP------------HPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLP 1665
            A  + L  +A+K+V+  E    S E    A+P+A VAV L   +  L +L LG  +  CP+ VP     +   S+++ + L G K +G +M   + +L R  GL+ L AA +QTP      LP             P     GW+W+   LN  T         P     ++  FL+VAG+ LQR YG+ F+K++ ++  D  P
Sbjct:  452 ALRYCLDKLAEKIVLQGEEQILSNEE--TAYPVAAVAVGLWCRYPDLGDLLLGHFYMRCPALVPVFFSRSMASSESEYLRLCGYKCDGSNMETESQFLRRVTGLMRLYAALLQTP------LPPWHKPLDSDMSRQPPGSKRGWQWLAMCLNTPT-------EDPNFAATLICTFLEVAGWTLQRDYGRQFRKMLHVLCKDYFP 640
[Close]
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: UPI001C71F40C (nucleoporin GLE1 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C71F40C)

HSP 1 Score: 84.3 bits (207), Expect = 2.590e-13
Identity = 72/250 (28.80%), Postives = 109/250 (43.60%), Query Frame = 1 
Query:  937 DPAIKRMRMAFKKAYQGSLNKLACSPSS-----VSLVMREIHEKANAPLTEARIGGYIDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLG-KLEGEDMTA----YLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTD 1656
            DP  K+ R   +KA    +N L+ +  S     V+ ++  +  KA+   T  R          F  Y  A + V   + D   +  +  AFP+A  A+ +  +     +L LG  +  CP   P         SD +    LG +L+ ED       +L+R  G + L AA +Q+P       PHP  +  GW+W++R LN            P  T  VL  FL VAG+ LQ+ YGK F K++ I+  D
Sbjct:  316 DPKNKKYRFELQKAVNTPINSLSSNSGSQIKTKVNKLLSILTGKASE--TSGRNMNGDSPIFNFCAYLAAKQFV--EQGDTQISSQHSTAFPIAFAALGVWVKQPEFGQLLLGHFYDKCPYLAPYYPPKEESQSDEEYFQSLGYRLDEEDKIEPKYKFLHRISGYVRLYAAIIQSPLPPGVSSPHPHGIEWGWKWLSRMLNL--------EPRPDITPTVLFDFLDVAGYALQKAYGKQFNKMLHILCKD 553
[Close]
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: A0A7M5UWB7_9CNID (mRNA export factor GLE1 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UWB7_9CNID)

HSP 1 Score: 83.6 bits (205), Expect = 5.610e-13
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 1 
Query: 1129 ADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLG------KLEGEDMTAYLNRTKGLIVLMAAT--MQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVP--TGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLP 1665
            A KLV+  +     A S++ AFP+A V   + T    + +L LG  +  CP  VP     T  +S T+   +LG      K+E +D   YLN+  G + L A+   M+ P    G   HP  L  GW W TR LN            PV   T  ++  FL+VAG  + +R+GK F+K++ ++K +++P
Sbjct:  519 AKKLVMQGQSQ--VASSFKTAFPIAAVCAGIWTLFPDVGDLLLGYFYLKCPYLVPLHFPKTDKISSTEYYQMLGYNVDDGKVEEDDK--YLNKLSGYVRLYASIIQMEMPPDLAGR-GHPHGLENGWVWFTRVLN----------LEPVELVTATIIFDFLEVAGHAMLKRFGKQFEKLLSLVKDELMP 692
[Close]
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: M2XM13_GALSU (mRNA export factor GLE1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XM13_GALSU)

HSP 1 Score: 77.0 bits (188), Expect = 5.390e-11
Identity = 65/244 (26.64%), Postives = 107/244 (43.85%), Query Frame = 1 
Query:  937 DPAIKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTEARIGGYIDR-AQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKLEGEDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLP 1665
            D +    R+  KK    + N++A S        ++I  KA   +   R  G   + +Q +    V ++LV   E+    A     AF +A V + +  E   L +LFL +    C   +PA A  +   S  K    +G  +GE +  +  R  G + L AA +QT    L    +   +  GW W+ R +N           P   T  VL  FL++AG+ L + YG+ F+K++ +I+  +LP
Sbjct:  349 DASTASYRLHLKKRINLAANQIAAS-------QKQILNKAYDIVDTLRKAGQSSKESQAYCFLCVIERLVEEGEKQ--VALHGDSAFAIAAVIIAVTAEFSELKQLFLAQFHNVCIFTIPAYAMRSKHDSVEKYWQSMGWKDGETLERFYERMSGYLALHAAVIQTEIPSLAN--NLFGIDSGWTWLARVVN---------MKPRRFTAFVLISFLEIAGYALNKHYGRQFEKLLRLIQGHILP 572
[Close]
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: A0A8J5VL22_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VL22_ZIZPA)

HSP 1 Score: 65.9 bits (159), Expect = 1.880e-7
Identity = 42/108 (38.89%), Postives = 56/108 (51.85%), Query Frame = 1 
Query: 1348 GKLEGEDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLPIL 1671
            G+LE  +  +YL      I L AA +QT    +  + HP  LAEGW+W+ +FLN L A           T   L  FLKVAGF L ++YG  F K++ +I    LP L
Sbjct:  606 GQLESTE--SYLTYVAAYIKLYAAMIQT---EIKGVRHPHGLAEGWKWLAKFLNALPA--------TTATACALHAFLKVAGFALHKKYGSQFMKLLDVISRCFLPAL 700
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FM11_ECTSI5.040e-11862.00mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000C6D6ACB2.560e-1530.30nucleoporin GLE1-like n=1 Tax=Centruroides sculptu... [more]
A0A1V9YX05_9STRA6.330e-1527.38mRNA export factor GLE1 n=1 Tax=Thraustotheca clav... [more]
UPI00188817BE9.840e-1430.88LOW QUALITY PROTEIN: nucleoporin GLE1-like n=1 Tax... [more]
UPI001C71F40C2.590e-1328.80nucleoporin GLE1 n=1 Tax=Parasteatoda tepidariorum... [more]
A0A7M5UWB7_9CNID5.610e-1332.28mRNA export factor GLE1 n=1 Tax=Clytia hemisphaeri... [more]
M2XM13_GALSU5.390e-1126.64mRNA export factor GLE1 n=1 Tax=Galdieria sulphura... [more]
A0A8J5VL22_ZIZPA1.880e-738.89Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:864294..872839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM11
Preferred nameGLE1
PFAMsGLE1
Model size1954
Max annot lvl2759|Eukaryota
KEGG koko:K18723
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000822,GO:0003006,GO:0003341,GO:0003351,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006449,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007422,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008289,GO:0009791,GO:0009799,GO:0009855,GO:0009889,GO:0009987,GO:0010001,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0014009,GO:0014010,GO:0014037,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016973,GO:0019222,GO:0022008,GO:0022414,GO:0030154,GO:0030182,GO:0030234,GO:0031090,GO:0031224,GO:0031323,GO:0031326,GO:0031369,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034613,GO:0036094,GO:0042063,GO:0042802,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0045184,GO:0046907,GO:0048316,GO:0048468,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0060287,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098772,GO:2000112
Exons12
Evalue4.28e-123
EggNOG OGsKOG2412@1|root,KOG2412@2759|Eukaryota
Descriptioninositol hexakisphosphate binding
Cds size1011
COG categoryZ
BRITEko00000,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866351.0595484-UTR-A-nodosum_M_contig10:864293..8645491680866351.0595484-UTR-A-nodosum_M_contig10:864293..864549Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 864294..864549 +
1680866351.0736995-UTR-A-nodosum_M_contig10:866877..8669981680866351.0736995-UTR-A-nodosum_M_contig10:866877..866998Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 866878..866998 +
1680866351.0839634-UTR-A-nodosum_M_contig10:867385..8674681680866351.0839634-UTR-A-nodosum_M_contig10:867385..867468Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 867386..867468 +
1680866351.0959892-UTR-A-nodosum_M_contig10:867693..8679641680866351.0959892-UTR-A-nodosum_M_contig10:867693..867964Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 867694..867964 +
1680866351.10697-UTR-A-nodosum_M_contig10:868347..8684081680866351.10697-UTR-A-nodosum_M_contig10:868347..868408Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 868348..868408 +
1680866351.9429061-UTR-A-nodosum_M_contig10:872688..8728391680866351.9429061-UTR-A-nodosum_M_contig10:872688..872839Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 872689..872839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866351.11704-CDS-A-nodosum_M_contig10:868408..8685371680866351.11704-CDS-A-nodosum_M_contig10:868408..868537Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 868409..868537 +
1680866351.1280093-CDS-A-nodosum_M_contig10:869168..8692461680866351.1280093-CDS-A-nodosum_M_contig10:869168..869246Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 869169..869246 +
1680866351.1362169-CDS-A-nodosum_M_contig10:869809..8699471680866351.1362169-CDS-A-nodosum_M_contig10:869809..869947Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 869810..869947 +
1680866351.1457045-CDS-A-nodosum_M_contig10:870098..8702321680866351.1457045-CDS-A-nodosum_M_contig10:870098..870232Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 870099..870232 +
1680866351.1569595-CDS-A-nodosum_M_contig10:870711..8708681680866351.1569595-CDS-A-nodosum_M_contig10:870711..870868Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 870712..870868 +
1680866351.9162977-CDS-A-nodosum_M_contig10:871789..8719451680866351.9162977-CDS-A-nodosum_M_contig10:871789..871945Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 871790..871945 +
1680866351.9266798-CDS-A-nodosum_M_contig10:872168..8722701680866351.9266798-CDS-A-nodosum_M_contig10:872168..872270Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 872169..872270 +
1680866351.9349513-CDS-A-nodosum_M_contig10:872571..8726881680866351.9349513-CDS-A-nodosum_M_contig10:872571..872688Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 872572..872688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.90.1prot_A-nodosum_M_contig10.90.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 868409..872688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.90.1

>prot_A-nodosum_M_contig10.90.1 ID=prot_A-nodosum_M_contig10.90.1|Name=mRNA_A-nodosum_M_contig10.90.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=337bp
MLVGHPSEAVEQKTVQRASAPTFLQRAEELKEAVEARRALNDSLMASADP
AIKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTEARIGGY
IDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHL
AELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKLEGEDMTAYLNRT
KGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNS
PPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLPILLPRSMVP
HLLDVIIQDYESTGCRFLPPAFRETEFRDFRAWGET*
back to top

mRNA from alignment at A-nodosum_M_contig10:864294..872839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.90.1 ID=mRNA_A-nodosum_M_contig10.90.1|Name=mRNA_A-nodosum_M_contig10.90.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8546bp|location=Sequence derived from alignment at A-nodosum_M_contig10:864294..872839+ (Ascophyllum nodosum dioecious)
CTTGACTTGCTACGCTCGTGGCCTCCGCCTCGCCTTACGTTTCGAGCGGG
GCTGATAAAGAGAGCTCTTTCTGGGAGAGGGGCGGCGGCGAACAGGTCGA
TATCGAGGTCAACCGTCATCAGCAGGAGGAGACGACGTGAGCTTGACGAC
GCGCTAGTTCAACGGGCGTACGACGCGACGCACCCCTCGGCTCCGCAAGG
AGAGGAAGACGGAGAGGACGAGCAGAGCTCACGATCGTCCGAGGACGCAT
CTAGAGGTTTGTGGATACTGCAACACTGATTCGAAGATATTGTTGACTTA
TTATAGTAGATACCCCAACATTTCTCGGCCAAATTATTTTGAGGTGAAAA
CGTTCCCTGGGAACAATCCAGTTGAGACTCTCTTCAGATTTTCAACTATT
AATACACAGCAGTTACGTACTAAAATAGGTGGTTGCTTGTTTTCCTGCTT
GCTGTCCCTAAACCGATTCCTGGACCGACTAACACTTAATGTTTACGTGA
GCGGGTTGGAGATGCTGTGGGGTGGTAACGTTCTGTTTCGATTACTTCTT
GTACAGTACCTCTGACTGACTCTCTTTTATTCAAACAACATCTTCTGCCA
GTAATTTAGACAAGAGCTTGGTCTTTGACAGGGAGCAGAAAATGTTGAAC
GAAAATGGCCAAAATCCATATTTCATCCCAAAACATTTTGAGGGTTTTTG
ACGACGGGAACCTGACTGAGCATTTTCAACCTAGCTACGAACCGGGATCT
CGGTGGAAAGTTGTTGTTTAAAGAAAATTCAGAACGCACCTAGACCTTCT
GAGCATCCCCCAGTCAGGGGGAAAAAATGTCAAAACGTTTAGGTGGGATC
ATAGGCTGCAAATACAAAACCTCTTCATGGCATTTAAACGGGTTCCTCTA
TGGTAGTAACATTGAGTCAACACTTTTTGTTGTTTTTGTCTTCACATTAA
AAACCGTTCCGATCTCTACTCAGTACCTTCCATCATCCGTACTGGTCCAA
CTGACCGCGTCCGTGGTCACAGGCTAACTACCCAAAAAGGGTACACATTG
TGAAAAAATAGAAAAGTGTTCCATTGAATTCTACCGTAAAATCCCTAGTA
AACGCATCCCCCCTTGCAAACGCACTCCCCTTTGTAAACGCATCGGTGCG
ATCTGCTACCGACGACTTTGTTGAGTTTCGCACCCTCTCCCCTTCAAAGG
GGGGTGCGGTGCGGAAATGCTCGTCAGGCTTCGGGGAAATATACCGACGG
GGGGGCTAGGGGATTGTTTTGCCTTGATATGCGTGAGGACTTCGTACCGC
AATAGTGAAAGAAGCATGAGGCGAGGACCTGGACAAATCGACCTTCGTTG
TGCCTCCTGTGATAATTGTCCAAAAACTAAAAATGCTGTTTTTTTAAGTC
CGCACCCCCGTGTACGTACTGAGTTTATTAGTCTCGCACCCCCTGTCCTT
GCAATTGTACTGGTGCGATCTGCTGCGGGTGAGTTTATTTTAGCATTGCA
CCCGGTGCGTTTACTAGGGGTTTTACGGTACTGTGCCAAGAGGTTCGCAG
GCGTGCGACTACCGATGGTGTAACAGATCCCTCCAGGCTCCGATCGCGAT
AGCTTCCGGCGGCAATAATAAGAGCAGCTTTTTCACAACATTGTTCATGG
TTCTCAAGCGTAAAATCTAGCCCGTGTCGGCGTTGTCTGCAGTCTTGGAG
ATGCTTGGTGACGAGGACGAAATATTATTTGAGGTGTTTGGGACAAGTAA
AGTAGACACCATATTGATCCTTGTGATGCTCCGGTCAAATTACACCGAAC
ACCGCGGTCGAGGATACTTCGGCAGACGGGCCCGAAGAACAGCGAATTCG
AGGCATGGTTTTGTTGGTGCATTAGAACATGGACGGGGAGTCAGCTCTCT
CTCTCTCTCTCTCTCTCACGCGCGCACGCTCTTTGACTTTTTGCTTTGAG
CGCAAGGAGTTGACTTGACACAACTTCTTCTGGCTCTTTTGTATGTACCT
TCCGGTACTACTTAATCTGTTCATTTGTATACTTGTAACTGTTCTCATCC
TGGTACTTTTTCCGAGTGCACTACTCAGCACTGCGTGTGCGTTCACAATC
GAACTGTAGAAGTTGTTTTAAACGAGCTTCACGAACAGATGAACCAAGTA
CTCTTGCCACTGTCGAGTTGTCTGACTTATGAAGTATTGGTGTGCTCACG
CAGGTGCCTGCCCTACGACGAGTACTGTTGGAAGTATAGTACGTACAGGA
GCCCCGAACTGTAGATGTGGTCCGAAACTCGATACAGCCACTCCGTGACA
GCAGTAGTGTGTATGTACACCTGATTTGTTAACATATACAACGGTGTGTG
GTATCCAATGACTAATGAATTGAACTTTCCAGAGACGCCCGAGCAAGTCA
CATAGCCTTAAAGCAAGCAACACCCCCCATTCGTAAAAATCGTTTGCCTT
AAGATTTTCTCCGTTAGATTTAGTCCGGCCTTGGTTGAAAAACGGATTTT
GGCCGTATTGACTTTTCGTTTTCTGCTCCCGGAAAAGCCGGCCTAATACA
CATACTGGTAACCATCTATGTGGCGATGCTCCAGTGAGGAGGGAAAAAGA
GGAGAAAGAGGAGGCGTTTTGGCGTCGGTTGAGGCGCGTGGAGGAGGAAC
GCGACCGACAGATCGAAGAGGAGCTGGCGTCTAGGTGGAAGAATCTCCAG
AGACTGTGAGTGAGCCAGCCAAGTGTCTCGGTGTGATGAAAACTTCTAAT
GGCTCAACGTTACTGTGGTGTGAGGCAACTCGACGCGACATATTATGGAA
TGGATTTATGAACGCGCGTGTTCCCAAGTATGATGTGCATGTCTCTCTTG
ATGACCGCTATGACCCGAAAACCTTTGTTGGTTCAACTGGCACGTAGAGC
TATGAAAAGTCTTCACTCCCTTGTAGTACTAGTATCACGGTAGAAAACTT
ACACAAGACGTGGGAACTTGCGGGAGCCTTGCACACACTTCCCCCTAGAC
TCACAACTCCCTCTCGTATTCTGAGGGACGCATATGAAGTGTCCGACCCC
GTCCCGTGGCGCGTGACACGTTACATGACGTCAACACGGCAGGCGCGCAG
AGGCGGATGCCGAAATCGCGGACGCCCTAGCTTCTAAGCATGTCCTGAAC
GGGATCAAAGAAGCCCAAGCTGCAGGTGATTATAATCGATGAAATATTCA
TGGCCAAACCTCATGGGAGTATCCCCGTCGCCACACGGTGCTGACGCTCT
GCCGATCTGTCTTAGAACCCCCAAGTAAACTCCTTGTTGAAATCGATTGA
GAGGGACGTCCGCCCTTCTGTGCTTGATCTAACACGGCCTCGACAACCGA
CAACCCCATTAACCGGCTGCTGCCATATCGTGCTCGATTCTACGTTACAG
GCGAGTGGAGCAAGCTCGAAAAATTATTGGCGACGGCGGAGGAGAGTGGG
CTGAAAACTCAGCTAGAGTTTGTATCCGCGCGGCAGGCGCTCCGCTCGGC
GAAGGACCGGGCGACAAAGGTCGCGGAAGAGCAGGCTGCAAAGGCTGCGG
AAGAGGAGGCTGCAAAGGCCGCGGAAGAGGAGGCTGCAAAGGCCGCGGAA
GAGGAGGCTGCAAAGGCCGCGGAAGAGGAGGCTGCAAAAGCCGCGGAAGA
GGAGGCTGCAAAAAATGACAGGTAGAGGCGGTGGTTTTTTGTTTTTTAGA
AAATGAGAGGTCGCCACGGCCGATCGTTTGCGATTCGTCCGAAGGCGAAG
GTTCCTACTTACCACGCTTCTGGACCGCGCATGTCCTTCTTTTACTGTGT
AAGTGTATCTCGAGAGACGGAAGCCTTACATGCGATACTTTCACTAACAT
GATTCCGCGTGCAACAGAGGCGAGAGGGACACTTGTTTTATACTTAGATA
TAATATATTATGGTTCCATTTTATAGTCGGGCTAAAAAACAACCGCATGT
CGCCTTGATTAGGAATGTGTGGAGTCGTACAATCGAGACTGTTATTTTTG
CCCACGGTGTGCGGTCATTTGTTTGTTTACAACTTTACATGTATACTATC
ACAGAGCAGCGGCGGCCGCGGAAACTAAGGCTCCAGCACCTGCAACAGCG
CCGACAGCACGAGGGATGTTGGTAGGCCATCCATCGGAGGCGGTCGAACA
GAAGACGGTTCAGCGTGCGAGTGCACCAACGTTCCTTCAGCGCGCGGAAG
AGCTGAAGGAGGCCGTAGAGGCGCGCAGGGCCTTGAATGACTCGGTGAGG
CTTCGACGGGTGATGACCGACGAGTACGCCTTTGTATTATGCAATTTTCA
TAAACCGTACTGGGAAGCATGTCATGGAGTGGTCGCTTGATGTTTCATTT
TGATGGGTGTAAATGGTGAAGGGGGAGGTGCGCAGTTGGTTTGCGGGCAT
CGCAGTATTCCTTGTTCGTTCGCCCCCCGACGACTCTCTCGAACGGTCCG
TGCAGCAAATGCCGTTTGAGCCTGGGTTTAGAAAAGTAAAATTGCGAAAT
GTATCGATCTTCGTCTTTGGAGGCAAGGGGAAAATATAAGCTACTTGTGA
CAAGCCAAGCACTCTCCACGAGCAATTGGCTGCAATTACCCCAGATTGAG
ATATTTCCGTACGCACTTGTAGTATAGTACTGATGGAAGAGACGGCATGC
AAAAAGCGGACAAGTTTGTGTCCAAGTCTTGTGTGAGTTTTTTTAACTGT
GGATACTTGTTGCTTGGTGATATATTTTTTTAAGCGGCGTAGTGTAATAC
GGACGATCTCCCGAGTGTTTCGCTCGATCTGTTCAAAACACCTCATCGAT
GTACAACGCCACCCTGCCACCCCGCCACCCTGCCACCCCGCCACTCATCT
GCTGCTCGTGGACATCTCTACGTAGCTGATGGCGAGCGCTGACCCGGCGA
TAAAGAGAATGCGAATGGCCTTCAAGAAGGCCTACCAAGGTTCCCTCAAC
AAGGTACGCATCTTGGAAACCAAAGCCATCTTGCGCAAATCAGCTCCATC
CGGTGCTTAACGGCGCCGACCTCACGTCAGATGTCAATCAGGCCGCAAAT
ATCGGCGCACAAATGACGTGTGGTGCACAGGGCGTTTTTTGTTGTTGAGA
GTAAGTCTTGTTTCATTACCCGGCGATCTAGCTCCACATACAGCAGGTCA
CTTTGGTTGTATATGTTTGTGGGGAAGGTGCCAGGTCATTACTAACGTGA
ACCTCACACTTTATCGCGCCGTTCTGGGCATCGTTCTCGCAACCCATTTG
GACTTTCTACCTCGTTTCGCTGTAAACGTCCTCCTTGTTCTACACGGTAT
ACGATGTTCCGGCGAACGAATGGTACTGTGCCCGTGGAACGCCCTCCCGC
AAAACCATAATGACCTGTGAGGTTTAGCACAGCACTTAATTGACCGCCTC
AGGCCTCTCAATTTCCACTCACGCCCCCTTCCGCCACCATCTCGATTTCC
ACTCACACTCACACTCACACTCACACCTCTCTGTAACCTACTCTGTACTA
CGTCGGATGTGAACAGCTCGCGTGTTCTCCCTCGAGCGTTTCGCTCGTGA
TGCGCGAGATTCACGAGAAAGCGAATGCCCCCCTCACGGAGGCGAGGATT
GGCGGCTACATTGACAGAGCGCAGGAGTTCTTCTTGTACAATGTCGCCGA
TAAGGTACGCGCACGGAGAAACAACTGTACTGGTTTGGGCGTGATAGCCT
CCTTTCTACTCCCAACCCCACGATGTGATACGTACCCTACATCCTTCTTG
CGACCTCTTCTCGCCCCCCTCCGAACAACGCCCCGGTATTGTCCGGTAAA
TTCAGCTTGTGGTCTACGCCGAACGCGACCACTTCAGCGCCGAGTCGTAC
AGGATGGCCTTCCCTCTGGCGTGCGTGGCCGTTGACCTCATGACCGAACA
CCGACATTTGGCGGAGCTTTTTCTCGGGAGGCTGTTTGCGTGAGTGTCCT
TACCGAGTCGTGGCGTACAATGATCCTGCTTCCGCAAAGCTACGTGGCAT
TTACGCCGACGGAACAATTTTTAAGAGTTGTTTGGATCGCAGACAAAACA
ACGCATCCCGACGCACGACAAACGGGAACAAAAACCTATATCTATCCTCC
TATGCTTGTTTTTTGTTTTGTTTTAGGAAGTAAGTGTGGTGTACGAGCAA
CAGCCCCGGCTCGTTTCCAGAAAATAATACAGTAAAAAGACCGAGACGCT
CCCTTACTCTCGTCAGAAGGGTTAATATTGTATTATTATTAGTATACTTT
TGTCTATTCGTATACCGTACACATCGTACCGTTGTGGCGAGTTGTAACGT
TGTTAAACGTTTTTGCGGTGCTGCGCGATGGGGCTATTTAACTCTCCCAT
TTGTTGTCCACTTCGGCCCCCACCCTTATGGTTTCGATCCGTACCCCCCT
CTCTCTTGGAAAACTCAGGGGGTGCCCCTCGGCCGTTCCTGCTCTGGCGT
TCAACACGGCCGGCATGAGCGACACGAAAGTCATGTCGCTATTGGGCAAG
CTGGAGGGAGAAGATATGACAGCATACTTGAACCGCACCAAGGGGCTGAT
CGTGCTGATGGCGGCAACGATGCAGGTGCTTGTGGCGTCCGCGGCAGAAT
AGCGTGGCTATGAATTTCGTTTCCAACTCGGACTCGTTCGTTATCCACCC
CATCGCGTCTTTCGTCGTGCTCAGGAATCTATATGTTGTTGCCCCCACTG
TTGTCTTAGGATGTCGTAGACTTACGTGTGCTGGGGCGAGCACATTTTAC
AAACATCCACGAGATTTGGTTCTTCCATTTTTTTTTTTCAAAGCCAACAA
TGTATTGCCCCTTTTCTTCCCCTAGCTACAGTATAAGGGGTAGCACCAAT
ATAGGTAGATACACTTATTTGAGTGCGTTCTTGATTTTTTTGCCGAGTTT
CTATAAGATAAACATCCTACTGTATTCAAGGATTCTATACGACTGATTCC
CCAATTCAAGATTTCTAGCTATGCACGTTCCGCTTAAAATTTCTTGTGGC
AGACCTCAGCTGCACAATTCCAACCGTGCTGATTTACAGTATTAATTTGT
TTTACTCCCTCAAACACGACACAAGGCTAAACCTTACAGCCTGTTGAATG
CAGTCCCTGTAGAACTTGCGATGTCGGTGCTATTAGTCTTAATGCCCCCT
AGTAACCGAGGCTATCATAACATGTCAGGAATGTGTTGGATCTGTGCATT
CTTGTCGGGGGTGTAGGAGAACCATGAAGTACGGACTCAGTGCCTTGAGG
GCGTAGATTACTGACCCTTGTATAAGTAAGGTCTGGCCCCGGGGCGTTCT
CGCGTGCCCCGAGGCATGTATGTGAAAAGAGGTTTGGAAGATGGACGCCG
TTAAATAAGGCGTTGGCGCCGTGGAAGGCCCGCTAAGACCCAAGGGAGGC
GTTGACCCTGTTTCATGATATTCTTACGCTGAACCATTCGCCTGTGGGCA
AACGCTCGAACTCCCTTACACACGTTCCGCGCCCCGGCTGCGACAGACAC
CATCCCGCCGTTTAGGAGAGCTTCCGCACCCGTTGCCCCTGGCGGAGGGA
TGGCGTTGGATCACTCGTTTCCTGAACGGTCTCACGGCGTATGTGAGACG
AGGCAACTCGCCGCCGGTGCCGACTGGCCCCGTGCTGGAGTGGTTTCTCA
AGGTAAAATGAGCCACAAGCTTGGGAGGGCACACGATCGATAACATCCCT
ATAACATTTCCACGATTACCACCTTCCATTTCAATCAGTCCTCTGCTTAC
CCTTGCCTCGAGGTTTATTTGAATTCACGGCCTCGTCCGGATGAAAATAT
TTGTTGCTTGAGCACTAAAGTTTTGACAAGGTTGCGACACGCACGGCTTA
TGTGCGGCCTTTTTTATTTGCGCAGGTTGCTGGATTTGAGCTGCAGCGTC
GGTACGGCAAGGCCTTCCAAAAAGTGGTGCTGATCATCAAGACGGATGTG
CTGCCGATCCTCCTGCCCAGGTCGATGGTGAGCGATGACGGATGTTTGCG
CTGCTTGTCCTCCCTCTCGGTTAGGCGAAGATCATCATTGCGTTGAGTTG
AGAGATCGCGAGCCGTCCTGACGACGTACTGTATGTGTGGGCGTGTCACA
TTCGGGACTTCCTTTCTGCCCGTGGTTGTTTTTAATTCTCAATCTTGCCC
TCCCCCCTGAGCTACAATGGCATAAACGTGTTACATGCCGAAGTACTTGA
AATTGGGTTGTTACGGTATGATGACAGTTCTGTCGGGTTGCGCCTCTGTT
TCCGCTGTTCTGCATCGCCCTTCGAAAGGTGCCCCACCTTCTCGACGTGA
TCATCCAGGACTACGAGAGCACGGGTTGCCGCTTTCTACCGCCAGCCTTT
AGGGAGACGGAGTTTAGAGATTTCAGAGCGTGGGGGGAAACGTAACTTCG
TCAGTGGGGAAAGGATTATGATGCATACATATGTTGTGCGCCTTACATAA
GACAGCTCCTTGTAGCGTTCGACATATTTAGGATTCTCAGAGGCTTCTCG
TACGACAGAGAGTTCTGCTCGTCATATTAGTGTGCCTCTCCTTACG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10:864294..872839+

>mRNA_A-nodosum_M_contig10.90.1 ID=mRNA_A-nodosum_M_contig10.90.1|Name=mRNA_A-nodosum_M_contig10.90.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1011bp|location=Sequence derived from alignment at A-nodosum_M_contig10:864294..872839+ (Ascophyllum nodosum dioecious)
ATGTTGGTAGGCCATCCATCGGAGGCGGTCGAACAGAAGACGGTTCAGCG
TGCGAGTGCACCAACGTTCCTTCAGCGCGCGGAAGAGCTGAAGGAGGCCG
TAGAGGCGCGCAGGGCCTTGAATGACTCGCTGATGGCGAGCGCTGACCCG
GCGATAAAGAGAATGCGAATGGCCTTCAAGAAGGCCTACCAAGGTTCCCT
CAACAAGCTCGCGTGTTCTCCCTCGAGCGTTTCGCTCGTGATGCGCGAGA
TTCACGAGAAAGCGAATGCCCCCCTCACGGAGGCGAGGATTGGCGGCTAC
ATTGACAGAGCGCAGGAGTTCTTCTTGTACAATGTCGCCGATAAGCTTGT
GGTCTACGCCGAACGCGACCACTTCAGCGCCGAGTCGTACAGGATGGCCT
TCCCTCTGGCGTGCGTGGCCGTTGACCTCATGACCGAACACCGACATTTG
GCGGAGCTTTTTCTCGGGAGGCTGTTTGCGGGGTGCCCCTCGGCCGTTCC
TGCTCTGGCGTTCAACACGGCCGGCATGAGCGACACGAAAGTCATGTCGC
TATTGGGCAAGCTGGAGGGAGAAGATATGACAGCATACTTGAACCGCACC
AAGGGGCTGATCGTGCTGATGGCGGCAACGATGCAGACACCATCCCGCCG
TTTAGGAGAGCTTCCGCACCCGTTGCCCCTGGCGGAGGGATGGCGTTGGA
TCACTCGTTTCCTGAACGGTCTCACGGCGTATGTGAGACGAGGCAACTCG
CCGCCGGTGCCGACTGGCCCCGTGCTGGAGTGGTTTCTCAAGGTTGCTGG
ATTTGAGCTGCAGCGTCGGTACGGCAAGGCCTTCCAAAAAGTGGTGCTGA
TCATCAAGACGGATGTGCTGCCGATCCTCCTGCCCAGGTCGATGGTGCCC
CACCTTCTCGACGTGATCATCCAGGACTACGAGAGCACGGGTTGCCGCTT
TCTACCGCCAGCCTTTAGGGAGACGGAGTTTAGAGATTTCAGAGCGTGGG
GGGAAACGTAA
back to top