mRNA_A-nodosum_M_contig10.41.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.41.2
Unique NamemRNA_A-nodosum_M_contig10.41.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: A0A6H5L173_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L173_9PHAE)

HSP 1 Score: 442 bits (1138), Expect = 5.170e-149
Identity = 264/453 (58.28%), Postives = 295/453 (65.12%), Query Frame = 2 
Query:  215 MAGAVAVQVAREDVFESCHLRDDST-TPSQDPTSSQH------------------PSNLESRVEVRSPSADEAGAGLNTAGNVTDDRPVALEAPVGDDSQAFGDGEGASGITVARYSRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNALFDEDGDADDEAVAVVDVASGT----EETEEVGALDEDNFQASDVDDDASSHPAEEREPCEQEAEVAIENAFVLDDGVRNVQCAPAALKDDDDESVETEPCSEESGESSLGEESLVSGEEMELDLEF 1504
            MAGAV VQVARE+VFE       +   P+Q      H                  P    +R +          AG    G  +   P + EA       +   G+    I VAR++RLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLE RP+AV EVNSFWVAL+DGDTAQVNKRPGLDPFLEALA+DYNTIVFTAAMPDYAGPVLDY+DPKGTLFHRRLYRSSCRQ VKGAFLKDLSVLG+E+TD++RTVLVDNNPLSFICQPTNG+LVASFYDDPNDTALASVMQLIRHLD AGDVRPILKDMFRLDTLL EYR ALFD++ DAD +   ++D         E   E G  +                                             +       DDDDESV+TE CSE SG+SSLG+ESL S EEMEL+LEF
Sbjct:    1 MAGAVDVQVAREEVFEGFGKHGAAAGAPAQQHQRCGHAGAPPLPAAAAAVADQSAPVVANARSDAVPQGEAHVAAGTGEPGTSSSLEPSSTEAAAVGGMASDQQGKQVGPIVVARHTRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPNAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQ-VKGAFLKDLSVLGVESTDMSRTVLVDNNPLSFICQPTNGILVASFYDDPNDTALASVMQLIRHLDQAGDVRPILKDMFRLDTLLGEYRAALFDDEDDADVDVDCILDXXXXXXXLLEGCLEAGQQERTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQGEDVECLKDDDDDESVKTEACSEGSGDSSLGDESLTSREEMELELEF 452
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BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: D7FM26_ECTSI (Putative nuclear LIM interactor-interacting protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM26_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 1.980e-139
Identity = 228/325 (70.15%), Postives = 245/325 (75.38%), Query Frame = 2 
Query:  536 MTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNALFDEDGDADDEAVAVVDVASGTEETEEVGALDEDNFQASDVDDDASSHPAEEREPCEQEAEVAIENAFVLDDGVRNVQCAPA-ALKDDDD-ESVETEPCSEESGESSLGEESLVSGEEMELDLEF 1504
            MTVVLDMDECLLHSKFHGPGAASEAYRQLE RPDAV EVNSFWVAL+DGDTAQVNKRPGLDPFLEALA+DYNTIVFTAAMPDYAGPVLDY+DPKGTLFHRRLYRSSCRQ VKGAFLKDLSVLG+E+TD++RTVLVDNNPLSFICQPTNG+LVASFYDDPNDTALASVMQLIRHLD AGDVRPILKDMFRLDTLL EYR ALFD+D DAD + +                                                          DG + +Q      LKDDDD ESV+TE CSE SG+SSLG+ESL S EEMEL+LEF
Sbjct:    1 MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQ-VKGAFLKDLSVLGVESTDMSRTVLVDNNPLSFICQPTNGILVASFYDDPNDTALASVMQLIRHLDQAGDVRPILKDMFRLDTLLGEYRTALFDDDDDADVDCILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSANGDGQQQLQGEDVECLKDDDDDESVKTEACSEGSGDSSLGDESLTSREEMELELEF 324
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BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: A0A836C7A9_9STRA (NLI interacting factor-like phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7A9_9STRA)

HSP 1 Score: 268 bits (685), Expect = 3.590e-83
Identity = 140/207 (67.63%), Postives = 164/207 (79.23%), Query Frame = 2 
Query:  533 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLG-LETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNALFDED 1150
            ++TV+LDMDECLLHSKFHG G+    YRQ E RP+ + EVNSF + L+DG  AQVN RPGL  FLE LAK  + +VFTAAMPDYAGPVLD LDP G L  +RLYRSSCRQ V+GAFLKDLSVLG +      R VL+DNNP SF+CQPTNG+LV SFYDD  DTALASV+QL++HL+HA DVRPIL+DMFRL++LL EYR  LF E+
Sbjct:   28 RLTVILDMDECLLHSKFHGLGSID--YRQQEERPEDIGEVNSFCIPLDDG-VAQVNIRPGLHDFLEELAKTCDVVVFTAAMPDYAGPVLDKLDPTGRLISKRLYRSSCRQ-VRGAFLKDLSVLGPVFDKHPGRCVLLDNNPCSFLCQPTNGILVTSFYDDAEDTALASVLQLVQHLEHAPDVRPILRDMFRLESLLREYRAMLFPEE 230
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BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: A0A835Z333_9STRA (NLI interacting factor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z333_9STRA)

HSP 1 Score: 262 bits (669), Expect = 4.360e-82
Identity = 136/197 (69.04%), Postives = 154/197 (78.17%), Query Frame = 2 
Query:  536 MTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLE-TTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAE 1123
            +TVVLDMDECLLHSKFHG GA S  YRQ E RP+ V EVNSFW+AL+DG  AQVN RPGL  FLE LA+  + +VFTAAMPDYAGPVLD +DP G L  RRLYR+SCRQ V+G FLKDLS LG    T+  R VL+DNNP SF+CQPTNG+LV SFYDD  DTALA VMQL+R L+   DVRPIL+DMFRL+ LL E
Sbjct:    1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDG-VAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQ-VRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 195
[Close]
BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: A0A836CB86_9STRA (Putative CTD small phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB86_9STRA)

HSP 1 Score: 206 bits (525), Expect = 3.070e-60
Identity = 110/214 (51.40%), Postives = 143/214 (66.82%), Query Frame = 2 
Query:  488 ITVARYSRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYR 1129
            I++     + P    K+TVVLD+DECL+HS F       + YRQ E RP+ +  V+S  + L   +   VN+RPGL  FLE L+ DY+ +VFTA   +YA  VLD +DP+GT FH RLYR SCRQ     +LKDL     E   L RTVLVDN+PLSFICQP+NG+LV+S+YDDP+D AL+SV++LIRHLD   DVRP L  +F L+ +L EY+
Sbjct:    2 ISLEGVDHVLPRVRQKLTVVLDLDECLVHSVFPN----GDKYRQSEARPENINLVDSMHLVLGGVEPVVVNRRPGLTKFLEQLSVDYHVVVFTAGRKEYAEEVLDAIDPQGTFFHHRLYRCSCRQARGNIYLKDLDRPVGEA--LERTVLVDNSPLSFICQPSNGILVSSWYDDPHDNALSSVLKLIRHLDACDDVRPTLTALFGLEPVLKEYQ 209
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BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: A0A662Y5D0_9STRA (FCP1 homology domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A662Y5D0_9STRA)

HSP 1 Score: 198 bits (503), Expect = 9.340e-57
Identity = 104/203 (51.23%), Postives = 139/203 (68.47%), Query Frame = 2 
Query:  533 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTEV-NSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNAL 1138
            ++ +VLDMDECL+HSKF         YRQ E+RP+ +    +SF + ++DG+ A VNKRPGLD FLE  AK ++  VFTA +  Y  P+LD LDPKG LF  R +R+SC+Q+ KG FLKDLSV+    TDL+R +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   42 RLALVLDMDECLVHSKFQN----EVEYRQSEYRPEELEAYGDSFEIVMDDGERAVVNKRPGLDRFLEEAAKHFDVYVFTAGLEAYGKPILDELDPKGNLFAGRFFRASCQQR-KGMFLKDLSVV---RTDLSRVILVDNNPVSFLLQPSNGIPVPSFYDDVNDRTLDSLTKVLASLQEVDDVRPRLHQLFRLADLLAEHQRVI 236
[Close]
BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: A0A3M6VFT3_9STRA (FCP1 homology domain-containing protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VFT3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.270e-56
Identity = 103/203 (50.74%), Postives = 137/203 (67.49%), Query Frame = 2 
Query:  533 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTE-VNSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNAL 1138
            ++ +VLDMDECL+HSKF         YRQ E+RP+ + E ++SF + +EDG+ A VNKRPGLD FLE  AK Y+  VFTA +  Y  P+LD LDPKG LF    +R SC+Q+ KG FLKDLSV+     DL+R +LVDNNP+SF+ QP+NG+ V SFYDD  D  L S+ +++  +    DVRP L  +FRL  LLAE++  +
Sbjct:   40 RIALVLDMDECLVHSKFQN----EVEYRQNEYRPEQLEEYIDSFEIVMEDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDVLDPKGNLFAGHFFRESCKQR-KGMFLKDLSVI--RDGDLSRVILVDNNPVSFLMQPSNGIPVPSFYDDTKDRTLESLSKVLASMQEVEDVRPRLHQLFRLADLLAEHQRVI 235
[Close]
BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: H3GXJ8_PHYRM (FCP1 homology domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3GXJ8_PHYRM)

HSP 1 Score: 197 bits (501), Expect = 1.790e-56
Identity = 104/203 (51.23%), Postives = 137/203 (67.49%), Query Frame = 2 
Query:  533 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTE-VNSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNAL 1138
            ++ +VLDMDECL+HSKF         YRQ E RP+ + +  +SF + ++DG+ A VNKRPGLD FLE  AK Y+  VFTA +  Y  P+LD LDPKG LF  R +R SC+Q+ KG FLKDLSV+     DL+R +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   40 RLALVLDMDECLVHSKFQN----EVEYRQSEFRPEQLEDFADSFEIVMDDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDELDPKGNLFAGRFFRESCQQR-KGMFLKDLSVV--RGGDLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVLASLQEVEDVRPRLHQLFRLADLLAEHQRVI 235
[Close]
BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: A0A7S2PH30_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PH30_9STRA)

HSP 1 Score: 196 bits (498), Expect = 5.100e-56
Identity = 106/221 (47.96%), Postives = 144/221 (65.16%), Query Frame = 2 
Query:  482 SGITVARYSRLAPY--KPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTE--VNSFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVK-GAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYR 1129
            +G ++ R+SR      +   + +VLDMDECL+HS+F     ++  YRQ E+RP A++   V SF + L DGD  QVNKRPGLD FL+ +   + T +FTAAM  YA PVLD LDP+ T+  +R YR SC    + G ++KDLS + L+  D  R VLVDNNPLSF+ QP+NG+LV++FYD P+D  L +V+ L+  L+   DVRP L DMF L   LAE +
Sbjct:   17 NGGSLIRHSRFVGSCRRKSDLVLVLDMDECLIHSQF----LSNTEYRQDEYRPSAISSKSVESFRIELPDGDLVQVNKRPGLDEFLQTVTSKFETHIFTAAMEVYASPVLDSLDPENTMLGKRFYRESCSLNSELGVYVKDLSKI-LQDVDHKRVVLVDNNPLSFLAQPSNGILVSNFYDSPDDITLKAVVDLLERLETKNDVRPTLDDMFGLSAALAELQ 232
[Close]
BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Match: K3WRS1_GLOUD (FCP1 homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRS1_GLOUD)

HSP 1 Score: 196 bits (497), Expect = 1.400e-55
Identity = 105/220 (47.73%), Postives = 145/220 (65.91%), Query Frame = 2 
Query:  482 SGITVARYSRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTEVN-SFWVALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNAL 1138
            SG   A     +P +  ++ +VLDMDECL+HSKF+        YRQ E+RP A+ + + SF + ++DG+ A V+KRPGLD FLE  +K ++  VFTA +  Y  P+LD LDPKGTLF  R +R SC+Q+ KG FLKDL V+     DL++ +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   47 SGCHAASSVPSSPVEEERIALVLDMDECLVHSKFYN----EVEYRQSEYRPTALAQYDDSFEIVMDDGERAIVHKRPGLDKFLEEASKHFDVYVFTAGLEAYGKPILDELDPKGTLFTGRFFRESCQQR-KGMFLKDLRVV---RKDLSKVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLTKVLTSLRELDDVRPRLHQLFRLADLLAEHQRMI 258
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.41.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L173_9PHAE5.170e-14958.28FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
D7FM26_ECTSI1.980e-13970.15Putative nuclear LIM interactor-interacting protei... [more]
A0A836C7A9_9STRA3.590e-8367.63NLI interacting factor-like phosphatase-domain-con... [more]
A0A835Z333_9STRA4.360e-8269.04NLI interacting factor (Fragment) n=1 Tax=Tribonem... [more]
A0A836CB86_9STRA3.070e-6051.40Putative CTD small phosphatase-like protein n=1 Ta... [more]
A0A662Y5D0_9STRA9.340e-5751.23FCP1 homology domain-containing protein n=4 Tax=Pe... [more]
A0A3M6VFT3_9STRA1.270e-5650.74FCP1 homology domain-containing protein n=9 Tax=Pe... [more]
H3GXJ8_PHYRM1.790e-5651.23FCP1 homology domain-containing protein n=12 Tax=P... [more]
A0A7S2PH30_9STRA5.100e-5647.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K3WRS1_GLOUD1.400e-5547.73FCP1 homology domain-containing protein n=1 Tax=Gl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:388639..395481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM26
PFAMsNIF
Model size1507
Max annot lvl2759|Eukaryota
KEGG koko:K15731,ko:K17616
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
Exons3
Evalue2.7e-141
EggNOG OGsCOG5190@1|root,KOG1605@2759|Eukaryota
Ec32 ortholog descriptionNLI interacting factor
Ec32 orthologEc-01_010410.1
EC3.1.3.16
Descriptionphosphoprotein phosphatase activity
Cds size1293
COG categoryK
BRITEko00000,ko01000,ko01009,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866349.6045408-CDS-A-nodosum_M_contig10:388638..3892831680866349.6045408-CDS-A-nodosum_M_contig10:388638..389283Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 388639..389283 -
1680866349.6157854-CDS-A-nodosum_M_contig10:393909..3940771680866349.6157854-CDS-A-nodosum_M_contig10:393909..394077Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 393910..394077 -
1680866349.6251843-CDS-A-nodosum_M_contig10:394787..3952671680866349.6251843-CDS-A-nodosum_M_contig10:394787..395267Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 394788..395267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866349.6367674-UTR-A-nodosum_M_contig10:395267..3954811680866349.6367674-UTR-A-nodosum_M_contig10:395267..395481Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 395268..395481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.41.2prot_A-nodosum_M_contig10.41.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 388639..395267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.41.2

>prot_A-nodosum_M_contig10.41.2 ID=prot_A-nodosum_M_contig10.41.2|Name=mRNA_A-nodosum_M_contig10.41.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=431bp
MAGAVAVQVAREDVFESCHLRDDSTTPSQDPTSSQHPSNLESRVEVRSPS
ADEAGAGLNTAGNVTDDRPVALEAPVGDDSQAFGDGEGASGITVARYSRL
APYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEHRPDAVTEVNSFW
VALEDGDTAQVNKRPGLDPFLEALAKDYNTIVFTAAMPDYAGPVLDYLDP
KGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFI
CQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTL
LAEYRNALFDEDGDADDEAVAVVDVASGTEETEEVGALDEDNFQASDVDD
DASSHPAEEREPCEQEAEVAIENAFVLDDGVRNVQCAPAALKDDDDESVE
TEPCSEESGESSLGEESLVSGEEMELDLEF*
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mRNA from alignment at A-nodosum_M_contig10:388639..395481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.41.2 ID=mRNA_A-nodosum_M_contig10.41.2|Name=mRNA_A-nodosum_M_contig10.41.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6843bp|location=Sequence derived from alignment at A-nodosum_M_contig10:388639..395481- (Ascophyllum nodosum dioecious)
CACTTTTTCTCCTCTGAACAATCTCTGGAGGGAAGTAAGTGAACGGTTTA
ACCTGGTGCTCTCGGGTTGGACGTGGACGTGAACCAGGTCAAACAAGCAT
TTTGCCGTTTTAAGGAGTCTGACATTCGGCCTTACGTTACGACGTGCTTT
TGGCGCCGGTGCTCCTGTCCCAACTGTTCGGTCCAAACGCTTTCTATACG
TTACATTAGCTGCGATGGCTGGCGCAGTAGCGGTGCAGGTTGCGCGGGAG
GATGTGTTCGAAAGTTGCCATCTAAGGGACGACAGCACCACCCCCTCCCA
GGACCCGACATCGTCCCAACACCCAAGTAACTTAGAGTCAAGGGTAGAAG
TTCGAAGCCCTAGCGCCGACGAAGCAGGTGCTGGGCTGAATACGGCGGGG
AACGTCACCGACGATCGACCAGTCGCCTTGGAGGCCCCGGTGGGAGATGA
TTCTCAGGCATTTGGTGACGGAGAGGGGGCGTCGGGGATTACGGTTGCAA
GGTACTCAAGACTTGCGCCGTACAAGCCAGGGAAGATGACTGTGGTTTTG
GACATGGACGAATGTCTGCTGCACAGCAAGTTCCATGGCCCAGGAGCAGC
CTCCGAAGCATATCGGCAATTGGAGCACCGACCGGATGCGGTGACCGAAG
TCAACAGCTTTTGGGTCGCGCTGGAGGATGGCGACACTGCACAGGTGCGT
AAAAAAGAACGTCGGTACTTTATTTCTCATCCCAATATTATTGAAGTGTT
TTCCTTTCCATAGAGCCTTTTCACCACGTCCAGTCAATTGTACAACTTTA
GTAGTTCTTGAATCGAAGTCAAATTCCCTCTGTTATGACATCACTTGGTA
TCCCTCGAAAACTCGAAGACTCTTGTTGCACGAGCAGTTTTTTCATATAT
ATAGATGATTCAGCAGGCTTGTCGACGCGTTCGAAAAATTCCGGCTGCAT
TTACGTGACCGAAGCACTTCAACCCTCCCATGGCTCTGGTCCATCGGGCA
CGTCGTCGACGGTGACAACAGTTACCGCGCCAGTTGACAAGTTTTTTAGT
TTGAATGCCATAAACAATGTGTCGCACAAAAAAATATACAAGAAAAGTCT
TCGGTTGAAAGCACTGGTTATCTTGTACCACTCCGTATATCAAATGCTCC
GATCGAATGGCGACTTTTCGACCTGTGTCAGATTTCGCTAACACATCAAA
GCCATCCTTCGCACAGAGGACTTCGCGTTGGCTTCACATTGTGGTTCACC
CTCTAAAACGCCCTCCAGTGCAGCTTGGAAACGTCCTCTTGTGTCCTTTA
ACCCTACCCTAAGCCCTCTCCGTTCGTTGGGTTTAAAGTGCGTGGGGAGA
GTGACGCCTTATTTTTCAAGCATTCTTCTCGCTATTGGACGTTACTCTCT
ATAGGTTAACAAGAGACCGGGACTCGACCCTTTTCTCGAAGCGCTGGCGA
AAGATTACAACACGATCGTTTTTACCGCCGCGATGCCGGACTACGCTGGC
CCGGTGTTGGACTACTTGGATCCCAAGGGTACCCTATTCCACCGGAGACT
TTACCGCAGTAGCTGTCGGCAGGTGAGGGTAAAATACTGTTCCCGTTTCA
CCTTGTCTTTTTATTTCTCATATTTTTCTGGCATTTGACCGTTGCGATAT
TTAGAAAAAATACCGGGGTATATTTTTAGAACAATCATTTCCACTTGGGT
TCGCGACCATCAGCTCCCTCGCAGTCCCTGGCTGATACTTTTTAGAATCG
GAAGGTCTAAGGGAGGCACGGTGGTGGAAGTATTCGGTTGGAGGCTTCTC
CGTGTCCGACCATAAAAAGAAGCGATGGCCACAAGTTCAGCGGATCGACA
GCAGTGGCTTCTTCTTTGCATCAAAATAATTTGGTACTGCAATAGTATGG
ATGTTTACTGCAGACGTTGTTGCCGGCACCAGTACTGAAATATACTGTTC
GTAAATTTCTACGAGATGTCATCTCTAGTTTCGACTTTCTTTAGCCCTTG
ACCCAGGACAAAATATGTTGAAATTATTCTAGCAGTTCGAGTTTAGTAGT
TGTATTTCACGAAAGCTTCAAGAGTTGGCGTTTCGACTGACATAACCGCC
GCGTTCCATCGCCAGACCTCCCTCGACCTTGTAGTAGAGGAAGTTTACCG
GCTTTTGGGATATTCTCCAGTCGAGATTTCTGTCCATTTCTTAGCGGAGA
TTCCTTTAGTAGAGTACTCGTTTGAACTTGTCCCCCAATTCCAGGACCGA
ATCATGTTTCCGTTACAGTATGGACCTCAATAGCAACGACTCATCAAGTT
GTAGGGGATTTCTACCAGTCAGTGCGTTGATGAGAGACTCGTAACTGGCA
ACGACAGCAACAGTAGCCTGTACGTCGTGTTTTTGTTTTTTGACGGGGTT
TTTGTTTCTCACGTTGATGAAAGTATTTTGCCTTCAACGTACTGAAATAC
GGGATTAATTAGAAATAGGGCCACCACCAGAGCAAAAGGAGCGTACAGGC
GCACGTACTGCTGGTACTCGACTGGAACTCGTGTATTTCGGTTGTGATCG
TGACGTTGACGAATGGCGTATACTACAGTAAACCCAGTACGTGTATCTGT
AGCATCTGTCCCTTGGGGGCAAGATGGGTTGCTTCGCTTTTGTTATTCAG
ACCTCCCCAAAAAATCAAGTTACAGTAGTTCTATAGCTCTATATAATCAG
TGTTTTTTAGTAAAGTGCTAATATTCTTCCATGTGTGGAAGAATGTCCCG
CCGAACACTCTCTTATTATTATCTAACCAAGTAGTCGCTGCAAGAGTGTT
GCGCTTGCTTGCGCAAAACGTTAGCTCTAGGTGATGATTTGTTTTTCTAG
ACCAAAGAGAAAGTCGCGTTTACAGCCGTTCCAATTTCGACACTTGATTT
GTATCGGTGGGAGACCTTAACTTTCCGTTGAACACCGCCCGCGTGGGGAC
CAACCCCGCGGTCTTAATCCATACACTCTTGTTTGAAGTGTTCAGATTTT
GTCAATGTCACTGTCCACAACATAAAACCGGAACATTCAGGGTGGCAACG
GCTATCGTAAGCACACAGAGATTTTGCTCTTCGTGAAGGCGAAGTCGCGC
GTTGCACACGAAGCCAAGCCGCACGGTAGTTAATATGCACAGCTAAGATG
CTGCATTATGTTGGGTTGATTTTGCCAACTGCAAAAGGCAAGTTGTTGAA
GTTTTCTAGCATCCCTCGATGATATATACCTGGTCTATATTTCTCTTCCA
AGTGAAATAAAAATACAAACTACAAAAAAGGGTGTCATTGAAACCTGTCT
GTCTTTGCAGATTGATACCACCTAAGCAGTTGATATTTTTCCCCTGTGTG
GGATGACCAGAAGGTCTAGATGCGTTCAGATTTTTGTTTCATTTTCCAAC
TCTAATTCCGGTGAAAAATGGCAAGAGTTTCACCTCTCGGTCATTTTGCA
ACGTACTGCTGAACTATTTACAAGTATCTGTACAAAAGTTTTTCTACGGA
GTACAGGTACGGCATGTATTGAAGTTGTCTCGCTGGCACTGTGCTCGACC
TTACGTATGATACTGCACAGTAAGTTCTGTCAGCACAAAAGCGTTTACCG
TACATATTTTCACCAATTACTGTACGGTATTGCACAAAAACTCTTTTGTT
ACAGTGTGTTTGTACCGGTCGCCACGGTAGCTCAGAGGTACCTCGTAACC
CTCTGACACGTTGGGGCGTAAATTCGACCTCAACGTCGACGAGGGATAGG
GAGGGCCGGACCCTTCTCGCGATAAAAAATCTAAGGCACGTACCGCAGTG
GAAAGGATGTTCGATCCCGGCAAATGGGATATCCTCGCTTAAATGACAAC
AACAACAACAACAACAAGTTCGATCCCCGCAAATGGGATATCTCGCTTAA
AAGCGAAAAACAAAAATAAGAATGCCCAACGGGTGGGGAACGATTAAAAT
CGTTATTGCACAAAATTCGACTTGACGGCGACGAGGGAAAGGAATGGTTG
AAATCTTCTCGCGAGAAAAATTAAGGCACGCTCAGCTAAAAGGCGGATGA
GAAATCTTCCGTGACCTTTCTCCTGTGTGAGGCTGGTACGTCCAACGGAT
TTGATGTCCAGAATGAATGGGAAGAAAACAAAAAAAAATACAGATTAATA
GGTAATGTAGGTATGAAAAGTATGGATGTTCAGCACAAAAGCAAAATTTA
GAAAAACGACTCGCCGATCCTGTTCAAGAGCAGGAAAAACACGTTTTCCC
TGTCTGTTTCGCGCCTTAAAATTTGGTTTAGCGAGACGTGGTTCGCCGCC
CTCACTTATTACACCCCAGCTATGCTGTTATTCAACGAAAAATCAGAACG
CGCCTAGACCTTCTGAGCACCCCCCAGTCAGGGGGGGAAATGTCGAAACT
TTGTTGTTTCTCACATTCAGTGTACTGGTTGCCAACCCGAGAAAACTACT
TTACACGGTGGCCAATCTTGCTCGTGGTCTGCTGAACAGGGAAAAGAGAA
CAAAAGAAGATGTCTGGCCATACCCCCCCCCATACTGCTCGTTCGGAGAA
ATAAAAAATCACCCGACGCATCTACAGGCGCTACGCATGTCTCGGTCGGT
CTCGCGTCCGTACAAGGATATCTCCGGCTCGCCGACTAGGCACTACGCTA
ATGGGTGTGGGTTCGCAAATATGTAACTGAATCTGTTGTTGTTGTTGTTG
TTGTTGATTCACACATTCAGCGTATTGTCCTTGCAACTGAAGAAACTACG
GTGACACAACAAGTCAGCCATAGACCTATCAAACGCCAATCCCGCTTGTG
GTCACAAAGAGGTACGAAGGTCAACGGGTCACATCATGGTGACAACCCGC
TACTCAGACCAACAGGGATCCAAATCGCGACAAAAAGTTATGCGTCTCTA
CAAGCAATGGCACCGACCAATATCAAAACGGTTCATCAAACCTCCTTACT
CCATTCGAGAGCAACCTCGATCGACTCGGAATGTTGTCGCCTACCCACGA
CCAGCGTTCTCAGCAAAAACCGGAAAAATTACGCTCCAACCAGTTTTGAT
CAACAAGTCCAAGTTTCTCAAGGCCACACATTTTGTACAGAAATAAGGAA
AATCGAAATACCGAGGTCCATGGGTGGAGGCCTTGAACTGGTGAAGCCGG
CGCGAGCCAGCATCCAGCCGTCCAAAGCCCTGTGCATTCTTGAAAATCTG
GAACATGTTCTGTAAAAAATTGTTAAAATTTGAAGGTTATGTACGAGAAC
ACCACCGCCAAACATATAATTGTACCGTGCTACCCAATACTGTACATGTA
CGTATCTGGTTATGAAGTACGTATCTGGTTTTGAAATATATGGGCAGCAA
ACCCAAAATTATTCGATTACAGTACGGTACATATACCTCGTGTGACCTCC
AAACTTTGCCAGTACTGTAACTCCTATACTAAAATGAATACAAGTTTTAC
TGTAATGTATAGGACGGCACTGCTACGTGTATTCTTTATACAGTACTGCA
GTTGTACTTTATTATTGAAAGCGTACCTTTGTACTACTACTGTACTAAAT
GTTGACGTTTTCCGGTGCTGTCATGAGGTGTCCGACTCCTTATAAAAATA
TCGAATGTTCTAGGTCTTTCTTACATAACGAATACTTGTTCATGTCTGTA
GTTTGTTTTATGGTATTGACATACTCAATCGTGGGATGTAACGTACGGTA
CCAGGAAATGAAAAACATACATTATTAGTCAAATTAGACGCCGTATCGAT
AAGCTTTTAATAGCATTGTTGGGTACTAGGACGTGTCAACTTAGTGCAAC
TTTTATCGTGAACGGGTCTCCTCGATTTCCACCTGCTATATTACTCCGCT
TTAAGCGGGAGGTGAGTTTGTTAATGATCAACGTTGACAGAAACTCCGTT
GCAAAAAGAAAAGCAGTGATTGATAAAACTCAAGTATATAGCTTTTACGA
GACGGCAAAAACAAGAAGGTTTGGACTTCGAATTCGTAGGTTGCAAGGGG
CTCTTGAGGACCAACATTTGTCACTACGTTTCTACGAATTTTATGTTAGG
CTTGACCACCAACTGTGTGCAAATCTTTGAAATGCCCGTCCAAGATCCAG
GATAGAGGGTTGAAACACTTAATAGTAGTTGTGTCACGATCCCTCTGACG
CCACAACGCCTCCGTTCGATACAAAAACCAAATGTCCTTTCCTTCGAGCA
GGTCAAGGGTGCCTTCTTAAAGGACCTTTCTGTCCTCGGTTTGGAGACAA
CCGATTTGACCAGAACCGTCCTGGTCGACAACAACCCGCTATCATTCATC
TGCCAACCAACGAACGGCGTACTTGTCGCGTCCTTTTACGACGACCCCAA
CGACACGGCTCTGGCAAGCGTGATGCAACTCATCCGGCATCTCGACCACG
CGGGGGACGTCCGCCCTATCCTTAAGGACATGTTCCGGCTCGACACCTTG
CTCGCCGAGTACCGAAATGCGTTGTTCGACGAGGACGGCGACGCGGATGA
CGAGGCCGTCGCCGTCGTGGACGTGGCAAGCGGCACAGAAGAAACGGAGG
AAGTGGGCGCGCTCGACGAGGACAATTTTCAGGCCAGCGATGTCGACGAC
GACGCGAGCAGCCACCCGGCAGAGGAGCGAGAGCCTTGCGAACAAGAGGC
GGAAGTCGCGATTGAGAATGCATTCGTGCTCGACGACGGGGTTAGAAACG
TGCAGTGCGCTCCGGCGGCGCTGAAAGACGACGACGATGAATCGGTCGAG
ACGGAGCCGTGTTCGGAGGAATCCGGCGAGTCTTCCCTAGGGGAAGAGTC
GTTGGTGTCTGGCGAGGAGATGGAGTTGGATTTGGAATTCTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10:388639..395481-

>mRNA_A-nodosum_M_contig10.41.2 ID=mRNA_A-nodosum_M_contig10.41.2|Name=mRNA_A-nodosum_M_contig10.41.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1293bp|location=Sequence derived from alignment at A-nodosum_M_contig10:388639..395481- (Ascophyllum nodosum dioecious)
ATGGCTGGCGCAGTAGCGGTGCAGGTTGCGCGGGAGGATGTGTTCGAAAG
TTGCCATCTAAGGGACGACAGCACCACCCCCTCCCAGGACCCGACATCGT
CCCAACACCCAAGTAACTTAGAGTCAAGGGTAGAAGTTCGAAGCCCTAGC
GCCGACGAAGCAGGTGCTGGGCTGAATACGGCGGGGAACGTCACCGACGA
TCGACCAGTCGCCTTGGAGGCCCCGGTGGGAGATGATTCTCAGGCATTTG
GTGACGGAGAGGGGGCGTCGGGGATTACGGTTGCAAGGTACTCAAGACTT
GCGCCGTACAAGCCAGGGAAGATGACTGTGGTTTTGGACATGGACGAATG
TCTGCTGCACAGCAAGTTCCATGGCCCAGGAGCAGCCTCCGAAGCATATC
GGCAATTGGAGCACCGACCGGATGCGGTGACCGAAGTCAACAGCTTTTGG
GTCGCGCTGGAGGATGGCGACACTGCACAGGTTAACAAGAGACCGGGACT
CGACCCTTTTCTCGAAGCGCTGGCGAAAGATTACAACACGATCGTTTTTA
CCGCCGCGATGCCGGACTACGCTGGCCCGGTGTTGGACTACTTGGATCCC
AAGGGTACCCTATTCCACCGGAGACTTTACCGCAGTAGCTGTCGGCAGCA
GGTCAAGGGTGCCTTCTTAAAGGACCTTTCTGTCCTCGGTTTGGAGACAA
CCGATTTGACCAGAACCGTCCTGGTCGACAACAACCCGCTATCATTCATC
TGCCAACCAACGAACGGCGTACTTGTCGCGTCCTTTTACGACGACCCCAA
CGACACGGCTCTGGCAAGCGTGATGCAACTCATCCGGCATCTCGACCACG
CGGGGGACGTCCGCCCTATCCTTAAGGACATGTTCCGGCTCGACACCTTG
CTCGCCGAGTACCGAAATGCGTTGTTCGACGAGGACGGCGACGCGGATGA
CGAGGCCGTCGCCGTCGTGGACGTGGCAAGCGGCACAGAAGAAACGGAGG
AAGTGGGCGCGCTCGACGAGGACAATTTTCAGGCCAGCGATGTCGACGAC
GACGCGAGCAGCCACCCGGCAGAGGAGCGAGAGCCTTGCGAACAAGAGGC
GGAAGTCGCGATTGAGAATGCATTCGTGCTCGACGACGGGGTTAGAAACG
TGCAGTGCGCTCCGGCGGCGCTGAAAGACGACGACGATGAATCGGTCGAG
ACGGAGCCGTGTTCGGAGGAATCCGGCGAGTCTTCCCTAGGGGAAGAGTC
GTTGGTGTCTGGCGAGGAGATGGAGTTGGATTTGGAATTCTAG
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