|
|
Homology
BLAST of mRNA_A-nodosum_M_contig10.173.1 vs. uniprot
Match: A0A6H5JGY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY4_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 4.670e-13 Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 Query: 1 DALGDLQTKLAHIQWRKYMNDNDIRKALDLTKRMHDRDLVLQLAVDREWE 150
DAL DL TKLAHIQWR++ ND IRKAL+ TKR+ +RD++LQL+VDRE E
Sbjct: 42 DALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGE 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 570 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-01_010000.1 |
| Cds size | 570 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866354.6677082-CDS-A-nodosum_M_contig10:1713783..1713857 | 1680866354.6677082-CDS-A-nodosum_M_contig10:1713783..1713857 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10 1713784..1713857 + |
| 1680866354.6826687-CDS-A-nodosum_M_contig10:1714101..1714174 | 1680866354.6826687-CDS-A-nodosum_M_contig10:1714101..1714174 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10 1714102..1714174 + |
| 1680866354.6910434-CDS-A-nodosum_M_contig10:1714964..1715087 | 1680866354.6910434-CDS-A-nodosum_M_contig10:1714964..1715087 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10 1714965..1715087 + |
| 1680866354.7107322-CDS-A-nodosum_M_contig10:1715385..1715685 | 1680866354.7107322-CDS-A-nodosum_M_contig10:1715385..1715685 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10 1715386..1715685 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.173.1 >prot_A-nodosum_M_contig10.173.1 ID=prot_A-nodosum_M_contig10.173.1|Name=mRNA_A-nodosum_M_contig10.173.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=190bp
DALGDLQTKLAHIQWRKYMNDNDIRKALDLTKRMHDRDLVLQLAVDREWE
RERRAEAIIRDELSRKAVLSETFLKDWEKQEEKNRKQQLKETKLRLKTIR
RAERVLRPKKESGSKLAFLDKESIPLEDGHHRVLSGKGEKDSRMDLKDKL
GTLKRGVKEKRRELIRAGKEGRKYGSYAASFKTGRGSIL* back to topmRNA from alignment at A-nodosum_M_contig10:1713784..1715685+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig10.173.1 ID=mRNA_A-nodosum_M_contig10.173.1|Name=mRNA_A-nodosum_M_contig10.173.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1902bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1713784..1715685+ (Ascophyllum nodosum dioecious)
GACGCGCTAGGCGACCTCCAGACAAAGCTAGCACACATCCAGTGGCGGAA
GTACATGAACGATAATGATATAAGGTAAGAGTATAAGGCGGCTCGTCTAG
AAGTAGGGAAATTCAAATAATATGTCCATCATCACATACATACACATATC
ACACAGAATAAAATTGATAATATTTAGGAACATCAGGGGACGTCGCGACG
TAAACAAATGTATTATGGTGGGAAGTGCGAGTAAATGTCGGCGATCGACC
TCCCCCTTCAGCTACAACATGTTAACTTATTACTACTGCCGTTCATGTAA
TCATGATGGTTGACGCAGGAAGGCTCTGGATCTTACCAAGCGTATGCATG
ACCGTGATTTGGTGCTCCAGCTTGCTGTCGACCGTGAATGGGTGAGCCAC
GTGTATGTGGCGTTTCTCAAACGATAGTAAACAGGGTACCCACTTTTGGA
TGATCATGTGTATGGTATTCTACTCACAACGCTTCGTAGTAATTATTTTG
TATTTTATACGGTATCAATAGTGGGTGTGGGAAAGAGAGGCGCATATTAA
CTGGTCCATGGTGACCTGCCAAGGCAGCACTCGTTCGGAACTACCTTGAG
GTTTACTGGTCCTATGCCGGCGGGCTCTCGGCAGTAAACGCCATCGGTAC
GTAATTGCGCGACTCGGTAAACTCGGGACTGATCTGATGGCATATGGTGG
TTCTAAATAAATACATGGAAGCCGGCGCGGAACTCGGGAGAAATCCCGTA
AGCAAGCATCAGATTCAACCTGAGTACGGAGATGAGCAGGCTGACGCGGG
ACGGGACAGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGC
GGACAGGGAAATATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTG
CTCTTACTAAATGTGTGACCATGCATACATGACCATAAAGTACCATTGTC
CAATCCCGCGTACATGTCATAATGGATGGATAAGACTCTTGCCCTCTCAA
TGCAAAGTTACAAGGAGTCGTTGGTTGCATGTTCAGCTCAAAGTTGCGTA
CGTGTCATAATGGAAGCGATTAACAGTAATTCAGAGATTGGCGATTCCTC
TCTGAAGCGCATAACCGCGCTCTATGCTACTCGATGTGACGTTCATGGCA
TATAATAATGGTCGTCGATTTGCCAAAAAAGGAAAGAGAGCGACGGGCGG
AGGCCATTATACGCGACGAGCTATCTCGTAAAGCCGTACTTTCCGAGACT
TTTTTGAAAGACTGGGAAAAGCAGGAGGAGAAAAACCGGAAACAACAGCT
CAAGGTTGGACGGTTCAGAGCGAACAAATCATCAATAACGTTGTAGGAGA
GGTCGTGATTTTCAAACTAACGAAGATCGCCTTTCCACTAACTCTGCACA
GCTATTGTGTAACCCTTTTCTCAGGACCTGCTAGACTAAATAATGTTGGT
GGTAACTTCCACGCCACGCTACGCGCCCGCACGAGGAGCATTTTAGCCGT
TGCGCGCGACTACCTCAGGTTACTTTGATGTCAAAAGCGCTGCATCCCAC
CCCACCCCCCGGGGCCCTCTCCTCGCAATCGATTTGGGAATTGTGATCGC
AGGAGACGAAGCTCCGTCTCAAAACCATCAGACGGGCCGAACGAGTCCTG
CGACCCAAAAAAGAATCAGGAAGCAAGCTGGCGTTCCTTGACAAAGAAAG
TATCCCTTTGGAGGACGGACATCATCGAGTCTTGTCGGGGAAGGGAGAGA
AAGACAGTCGCATGGACTTGAAGGATAAGTTGGGGACATTGAAAAGGGGG
GTGAAGGAAAAGCGACGTGAGCTGATACGCGCGGGGAAGGAAGGTCGTAA
GTATGGATCATACGCGGCTAGCTTCAAGACCGGTCGTGGGAGCATACTTT
GA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig10:1713784..1715685+ >mRNA_A-nodosum_M_contig10.173.1 ID=mRNA_A-nodosum_M_contig10.173.1|Name=mRNA_A-nodosum_M_contig10.173.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1713784..1715685+ (Ascophyllum nodosum dioecious)
GACGCGCTAGGCGACCTCCAGACAAAGCTAGCACACATCCAGTGGCGGAA
GTACATGAACGATAATGATATAAGGAAGGCTCTGGATCTTACCAAGCGTA
TGCATGACCGTGATTTGGTGCTCCAGCTTGCTGTCGACCGTGAATGGGAA
AGAGAGCGACGGGCGGAGGCCATTATACGCGACGAGCTATCTCGTAAAGC
CGTACTTTCCGAGACTTTTTTGAAAGACTGGGAAAAGCAGGAGGAGAAAA
ACCGGAAACAACAGCTCAAGGAGACGAAGCTCCGTCTCAAAACCATCAGA
CGGGCCGAACGAGTCCTGCGACCCAAAAAAGAATCAGGAAGCAAGCTGGC
GTTCCTTGACAAAGAAAGTATCCCTTTGGAGGACGGACATCATCGAGTCT
TGTCGGGGAAGGGAGAGAAAGACAGTCGCATGGACTTGAAGGATAAGTTG
GGGACATTGAAAAGGGGGGTGAAGGAAAAGCGACGTGAGCTGATACGCGC
GGGGAAGGAAGGTCGTAAGTATGGATCATACGCGGCTAGCTTCAAGACCG
GTCGTGGGAGCATACTTTGA back to top
|