mRNA_A-nodosum_M_contig10.172.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.172.1
Unique NamemRNA_A-nodosum_M_contig10.172.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:1711092..1711757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size272
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866347.7788866-CDS-A-nodosum_M_contig10:1711093..17112181680866347.7788866-CDS-A-nodosum_M_contig10:1711093..1711218Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1711094..1711218 -
1680866347.7893758-CDS-A-nodosum_M_contig10:1711612..17117571680866347.7893758-CDS-A-nodosum_M_contig10:1711612..1711757Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1711613..1711757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.172.1prot_A-nodosum_M_contig10.172.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 1711094..1711757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.172.1

>prot_A-nodosum_M_contig10.172.1 ID=prot_A-nodosum_M_contig10.172.1|Name=mRNA_A-nodosum_M_contig10.172.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=90bp
NNCPGWSGGRGVNQDPRKCSLDAVPEQTRRRVEITPGCHHRRTGAVGCGQ
HQTTDRSASASRRGRYAGGYVGRARAGEAVAQRFWGERLR
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mRNA from alignment at A-nodosum_M_contig10:1711092..1711757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.172.1 ID=mRNA_A-nodosum_M_contig10.172.1|Name=mRNA_A-nodosum_M_contig10.172.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=666bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1711092..1711757- (Ascophyllum nodosum dioecious)
AATAATTGTCCGGGCTGGTCGGGCGGTCGTGGGGTTAATCAAGATCCACG
TAAGTGCAGCCTGGATGCTGTACCCGAACAAACTCGGCGTAGAGTCGAGA
TCACTCCAGGATGCCATCATCGGAGAACTGGTGCTGTGGGATGTGGTGAG
TTGTCGCTTATCTTGAACAGTGTATTGAAATCCAGAACACCCAACGTTAC
ATCTTCTCTGTTTGATTGTGTTCACGGCATCAACATATAGAAGGTCGTCC
TTCCCATAAATCTCCTCACATGCCTGGGGGGTGGGGGGGTACACGCAAAT
TGTTGAAAAGAAAAAATGGAACGAATGCTCAGAGGAAATCCAAATGAAAC
CATCATATCGAGCCAGATACCCTTTGCACACCTGCTAGACCGGGATGTGC
AGCGTTTTGTTTTCGCAGCGTTTTTTTTTTTTTACGTGGAGTCGGCGAGT
TCTAGTTTTAACATGGAGTAGGTGAGTTGTGGTTGAGCCTGATGTGCTTG
CAACCGTTCCTGTGTTGTGTTTTTTGGTCCGAGTAACAGGCCAACACCAG
ACTACAGACAGATCCGCCTCCGCTTCCAGGCGTGGACGGTACGCGGGGGG
CTACGTCGGCAGGGCTAGAGCGGGAGAAGCCGTCGCCCAACGTTTCTGGG
GCGAGCGACTGCGTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1711092..1711757-

>mRNA_A-nodosum_M_contig10.172.1 ID=mRNA_A-nodosum_M_contig10.172.1|Name=mRNA_A-nodosum_M_contig10.172.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1711092..1711757- (Ascophyllum nodosum dioecious)
AATAATTGTCCGGGCTGGTCGGGCGGTCGTGGGGTTAATCAAGATCCACG
TAAGTGCAGCCTGGATGCTGTACCCGAACAAACTCGGCGTAGAGTCGAGA
TCACTCCAGGATGCCATCATCGGAGAACTGGTGCTGTGGGATGTGGCCAA
CACCAGACTACAGACAGATCCGCCTCCGCTTCCAGGCGTGGACGGTACGC
GGGGGGCTACGTCGGCAGGGCTAGAGCGGGAGAAGCCGTCGCCCAACGTT
TCTGGGGCGAGCGACTGCGT
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