mRNA_A-nodosum_M_contig10.146.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.146.2
Unique NamemRNA_A-nodosum_M_contig10.146.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: D8LJW0_ECTSI (ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW0_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 6.320e-111
Identity = 175/208 (84.13%), Postives = 180/208 (86.54%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDGPKNGGEGKS 624
            MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDIT IMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDET                    GVELGQLLEEEKL G+P+LIFANKQDLLSALS+DEISQGLNLHTIRDRTWFIQA SAKTGEGLQEGMEW+VSQINDG   G E K+
Sbjct:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDET--------------------GVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEISQGLNLHTIRDRTWFIQAASAKTGEGLQEGMEWVVSQINDGAGGGAESKN 188
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A835ZEJ4_9STRA (ARL3, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ4_9STRA)

HSP 1 Score: 306 bits (783), Expect = 1.360e-97
Identity = 155/208 (74.52%), Postives = 174/208 (83.65%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDGPKNGGEGKS 624
            MGLLTLLRKLKR+DQEARILVLGLDNAGKTTILKKLSEEDIT IMPTQGFNIKSLMH++FKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSAD+RRM+ET                    G ELGQLLEE+KL  VP+LI+ANKQDL+SA++ DEI++GLNLHTIRDR W IQ  SAKTG+GLQ+GMEWIV++IND  +  GE K+
Sbjct:    1 MGLLTLLRKLKRTDQEARILVLGLDNAGKTTILKKLSEEDITSIMPTQGFNIKSLMHDEFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADKRRMEET--------------------GEELGQLLEEDKLSEVPVLIYANKQDLMSAMAPDEITEGLNLHTIRDRPWHIQGCSAKTGDGLQDGMEWIVTKINDASRARGEEKA 188
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7R9YCL1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCL1_9STRA)

HSP 1 Score: 286 bits (733), Expect = 4.690e-90
Identity = 143/197 (72.59%), Postives = 162/197 (82.23%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQIN 591
            MGLL LLRKLK +D+EARILVLGLDNAGKTTILKKLS+ED+  IMPTQGFNIKSLMH +FKLNVWDIGGQKSIRPYWRNYFDQTDAL+YVIDSADRRR++ET                    GVELGQLL+E+KL GVP+LIFANKQDL++A S +E++ GLNLH IRDR W +Q  SAKT +GLQEGMEWIVSQ+N
Sbjct:    1 MGLLNLLRKLKSTDREARILVLGLDNAGKTTILKKLSDEDVNHIMPTQGFNIKSLMHAEFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVIDSADRRRLEET--------------------GVELGQLLQEDKLLGVPVLIFANKQDLINAASDEELTDGLNLHVIRDREWTVQPCSAKTADGLQEGMEWIVSQMN 177
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7S0YMS3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YMS3_9CRYP)

HSP 1 Score: 280 bits (715), Expect = 1.390e-87
Identity = 138/197 (70.05%), Postives = 160/197 (81.22%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQIN 591
            MGLLTLLRKLK++D+EARILVLGLDNAGKTT LKKL++EDIT  MPTQGFNIKS++H+ FKLNVWDIGGQK+IRPYWRNYFDQTDAL+YVID +DRRRMDET                    GVEL  LLEEE+L GVPLL+FANKQDLL+A++ D++++ LNLH+IRDR W IQ  SAKTGEGLQ GMEW+V  IN
Sbjct:    1 MGLLTLLRKLKKTDKEARILVLGLDNAGKTTALKKLADEDITTTMPTQGFNIKSVIHDGFKLNVWDIGGQKTIRPYWRNYFDQTDALVYVIDCSDRRRMDET--------------------GVELNTLLEEEQLAGVPLLLFANKQDLLNAMAPDDVTEALNLHSIRDRIWHIQPCSAKTGEGLQAGMEWMVGNIN 177
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7S0LYW6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LYW6_9CRYP)

HSP 1 Score: 276 bits (707), Expect = 2.650e-86
Identity = 138/196 (70.41%), Postives = 159/196 (81.12%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQI 588
            MGLLTLLRKLKR+D+EARILVLGLDNAGKTT LK+L++EDIT  MPTQGFNIKS++HE FKLNVWDIGGQKSIRPYWRNYFDQTDA++YVID ADRRR+DET                    GVEL  LLEEEKL GVP+LIFANK+DL++A+S DE+++ L+LH IRDRTW IQ  SAKT EGLQ+GMEW+V  I
Sbjct:    7 MGLLTLLRKLKRTDKEARILVLGLDNAGKTTALKRLADEDITHTMPTQGFNIKSVVHEGFKLNVWDIGGQKSIRPYWRNYFDQTDAMVYVIDCADRRRIDET--------------------GVELQALLEEEKLAGVPVLIFANKKDLMNAMSPDELTEVLHLHDIRDRTWHIQHCSAKTSEGLQDGMEWLVKNI 182
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7S3HPP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPP9_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.810e-85
Identity = 140/199 (70.35%), Postives = 160/199 (80.40%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDG 597
            MGLLTLLRKLK+SDQEAR+LVLGLDN+GKTTILKKLS+EDI+QIMPTQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRNY+DQTDALIYVIDSADRRRM+ET                    GVEL QLL+EEKL  VPLLI ANKQDL++AL+  EI+  L L+ +R+RTW I   SA+ G GLQEGMEW++ +IN G
Sbjct:    1 MGLLTLLRKLKKSDQEARLLVLGLDNSGKTTILKKLSDEDISQIMPTQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNYYDQTDALIYVIDSADRRRMEET--------------------GVELQQLLDEEKLANVPLLIMANKQDLMNALTPGEITAELGLNEMRERTWQILPCSARDGTGLQEGMEWLLGEINSG 179
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: K3WN62_GLOUD (Uncharacterized protein n=32 Tax=Oomycota TaxID=4762 RepID=K3WN62_GLOUD)

HSP 1 Score: 273 bits (699), Expect = 4.400e-85
Identity = 141/207 (68.12%), Postives = 160/207 (77.29%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDGPKNGGEGK 621
            MGLL LLRKLK+ D EARILVLGLDN GKTTILKKLSEEDI+ IMPTQGFN+KSL  + FKLN+WDIGGQK+IRPYWRNY++QTDALIYVIDSADRRR++ET                    G+EL  LLEEEKL  VP+L+F+NKQDLL+AL + EIS  LNL TIRDRTW IQA SAKTGEGLQEGMEWIV+ ++     G E K
Sbjct:    1 MGLLNLLRKLKKDDSEARILVLGLDNGGKTTILKKLSEEDISHIMPTQGFNVKSLQVDGFKLNMWDIGGQKTIRPYWRNYYEQTDALIYVIDSADRRRLEET--------------------GMELVTLLEEEKLANVPILVFSNKQDLLNALPSSEISTALNLATIRDRTWHIQACSAKTGEGLQEGMEWIVNTMSSSAGRGREAK 187
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7J7PXL4_9CHLO (ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7PXL4_9CHLO)

HSP 1 Score: 272 bits (696), Expect = 8.720e-85
Identity = 138/196 (70.41%), Postives = 156/196 (79.59%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQI 588
            MGLL LLRKL++S+ EARILVLGLDNAGKTTILKKLS+EDI+ IMPTQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRN FD TDAL+YVIDSADR+R+DE                     GVEL QLLEEEK+ GVP+L+ ANKQDLL+ALSAD+I++ LNL  IRDR W IQ  SAK G GLQEGMEW+V Q+
Sbjct:    1 MGLLALLRKLRKSEGEARILVLGLDNAGKTTILKKLSDEDISTIMPTQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNNFDSTDALVYVIDSADRKRIDEC--------------------GVELAQLLEEEKMNGVPVLVLANKQDLLAALSADDIAESLNLFLIRDRPWQIQGCSAKDGAGLQEGMEWLVKQV 176
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A0G4ETW3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ETW3_VITBC)

HSP 1 Score: 271 bits (694), Expect = 1.790e-84
Identity = 136/196 (69.39%), Postives = 160/196 (81.63%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQI 588
            MGLLTLLRKLKRSD EARILVLGLDN+GKTTILKKLS+EDI+ IMPTQGFNIKSL+   FKLNVWDIGGQK+IR YW+NYF+ TDALIYVIDSADRRR++E+                    G EL +LL+++KLGG+PLL+FANKQDLL ALSA EI++ L+LH IRDRTW IQA SAKTG+GLQ+GMEW+V+ +
Sbjct:    1 MGLLTLLRKLKRSDSEARILVLGLDNSGKTTILKKLSDEDISHIMPTQGFNIKSLVQGSFKLNVWDIGGQKTIRAYWQNYFEGTDALIYVIDSADRRRLEES--------------------GEELNELLQQDKLGGIPLLVFANKQDLLQALSAQEIAEQLSLHAIRDRTWNIQACSAKTGDGLQDGMEWLVTTL 176
[Close]
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: L1JN43_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JN43_GUITC)

HSP 1 Score: 271 bits (693), Expect = 2.610e-84
Identity = 136/197 (69.04%), Postives = 155/197 (78.68%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQIN 591
            MGLLTLLRKLK+S++E RILVLGLDNAGKTT LKKL++EDIT  MPTQGFNIKS++HE FKLNVWDIGGQK+IRPYWRNYFDQTDAL++VID +D RRMDET                    GVEL QLL+EEKL GVPLLIFANKQDL++A+  DE+++ L L  IRDR W IQ  SAKTGEGLQ GMEW+V  IN
Sbjct:    1 MGLLTLLRKLKKSEKEFRILVLGLDNAGKTTALKKLADEDITHTMPTQGFNIKSVIHEGFKLNVWDIGGQKTIRPYWRNYFDQTDALVFVIDCSDHRRMDET--------------------GVELNQLLDEEKLAGVPLLIFANKQDLMNAMGPDEVTEVLGLTNIRDRAWHIQPCSAKTGEGLQGGMEWLVKNIN 177
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJW0_ECTSI6.320e-11184.13ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
A0A835ZEJ4_9STRA1.360e-9774.52ARL3, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]
A0A7R9YCL1_9STRA4.690e-9072.59Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0YMS3_9CRYP1.390e-8770.05Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0LYW6_9CRYP2.650e-8670.41Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S3HPP9_9STRA1.810e-8570.35Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K3WN62_GLOUD4.400e-8568.12Uncharacterized protein n=32 Tax=Oomycota TaxID=47... [more]
A0A7J7PXL4_9CHLO8.720e-8570.41ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 ... [more]
A0A0G4ETW3_VITBC1.790e-8469.39Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
L1JN43_GUITC2.610e-8469.04Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:1410958..1414421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJW0
Preferred nameARL3
PFAMsArf
Model size1931
Max annot lvl2759|Eukaryota
KEGG koko:K07944,ko:K07977,ko:K11278
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0000278,GO:0000281,GO:0000910,GO:0001655,GO:0001763,GO:0001822,GO:0001882,GO:0001883,GO:0002009,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005929,GO:0005930,GO:0006810,GO:0006892,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007424,GO:0008017,GO:0008092,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010970,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022008,GO:0022402,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030496,GO:0030705,GO:0031090,GO:0031503,GO:0031984,GO:0032391,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032838,GO:0035146,GO:0035147,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0035869,GO:0036064,GO:0036094,GO:0042073,GO:0042461,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051716,GO:0060271,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0061640,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0097014,GO:0097159,GO:0097367,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1903047
Exons4
Evalue1.97e-118
EggNOG OGsCOG1100@1|root,KOG0074@2759|Eukaryota
Ec32 ortholog descriptionARL3, ARF-like Ras superfamily GTPase
Ec32 orthologEc-01_009870.1
DescriptionGTP binding
Cds size627
COG categoryKLT
BRITEko00000,ko03036,ko04031
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866353.7778335-UTR-A-nodosum_M_contig10:1410957..14122611680866353.7778335-UTR-A-nodosum_M_contig10:1410957..1412261Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 1410958..1412261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866353.794225-CDS-A-nodosum_M_contig10:1412261..14124171680866353.794225-CDS-A-nodosum_M_contig10:1412261..1412417Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1412262..1412417 -
1680866353.803351-CDS-A-nodosum_M_contig10:1412821..14129891680866353.803351-CDS-A-nodosum_M_contig10:1412821..1412989Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1412822..1412989 -
1680866353.8128524-CDS-A-nodosum_M_contig10:1413254..14134131680866353.8128524-CDS-A-nodosum_M_contig10:1413254..1413413Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1413255..1413413 -
1680866353.8347402-CDS-A-nodosum_M_contig10:1414277..14144211680866353.8347402-CDS-A-nodosum_M_contig10:1414277..1414421Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1414278..1414421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.146.2prot_A-nodosum_M_contig10.146.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 1412262..1414421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.146.2

>prot_A-nodosum_M_contig10.146.2 ID=prot_A-nodosum_M_contig10.146.2|Name=mRNA_A-nodosum_M_contig10.146.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=209bp
MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGF
NIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMD
ETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLL
SALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDGP
KNGGEGKS*
back to top

mRNA from alignment at A-nodosum_M_contig10:1410958..1414421-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.146.2 ID=mRNA_A-nodosum_M_contig10.146.2|Name=mRNA_A-nodosum_M_contig10.146.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3464bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1410958..1414421- (Ascophyllum nodosum dioecious)
ATGGGACTCTTGACGTTGCTTCGAAAGCTCAAGAGGAGTGATCAGGAGGC
GAGGATATTGGTGCTGGGTCTCGACAACGCCGGTAAAACCACGATCCTCA
AGAAGCTTTCAGAGGAGGACATAACACAGATCATGCCCACTCAGGTAATG
CTCCTTAGATCAACCTGCTACAGTATCAACACCTTGCAACTACTTGTCTT
CTGCATTACAGTATCTTGGATCGAAGCAGTTGTATGGTCTGGCGAAGCGT
TCCGGAAACTACTGTACAAACAGATGTCGAAAACAAGGAAGGAAAGTTCG
CGTTCGAGGGCGACTGTGATCTGCCCTAAATGTAGTTAAGTTCTGCTGGG
GGGGCGTTGCGGAATCTTGCCCCGTGGCCTAGTCGGATATAGCCCTGTCT
TGATTGAAATATCTGCAACCCTCTCTCTCTACACTGTGTATCCCTCTATG
CGCGGCTTACATATGTTGATCATTGACCTTGCTGGGAGTCTTAGCTTGAC
TGTGTTGTTGTGTTTAGCTCTACAAGTGTGTGCATCCTGCTCGGCTGTGA
GCCGCCTCACGAGAAGCCAATGTAGTTCATCTAAGTCGAGGGAACACGCA
AATATTTCACAATGTCGATCATACCACCCAAGCCCTGTACCATATTCTAG
TAAAGTTATAAGATCTCGCCATGCAGCCCTGTCGAGACTCGATATCGCAC
GGAGTTCGTTGCTTGATCGTCGATTATCCCTCCGTTTTATTCCGGTTCTA
ACGACCGTGGAAATGACGCACGCTTTCACCGTTTTTTAGACTAGAGCTCG
CCCGCTATTTCTCTCGATCTAAGCTAGGCGTTACTCTCTCTTACACAACA
AAGAGTCCTTGCTCAAGAAGTGTTGCTTCACTCTCGAAACTTGATAGAGC
TTGTCTCTGCGTACCTCATGGCGGTGCTTGAAGAAACTCCCTGCCGTCTT
CGATGCGAGGCAACGGAAATGCGCTAATTTGTTGCTGAACGCTTGACCTC
ACTAATAGGGATTCAACATCAAGAGCCTGATGCACGAGGACTTCAAGTTG
AACGTTTGGGATATCGGCGGTCAGAAGTCTATCAGGCCTTATTGGCGTAA
CTACTTTGACCAGACCGATGCGCTCATTTACGTTATCGATAGCGCTGACC
GGCGACGCATGGACGAGGTACGCTTTGCACCGTGGTCTTAGACGAGTAGA
GGCGAAAGCTGCCATTTCGCACTGCTTTGATTTCGTACAGTTTTACGGGG
AAGGGGTTGACCTCAGAACCCCTCAAAGATCAACAATCGAATGAATAGAG
TATCACCCAAAGGATTAAGAGATCGCACTTGCTCGCATCAAAATACATGT
ATAATTTTTTTGTTGGTCTTCTTGTTGATCAAGACCCCAACTTATCTGAA
CTTCAACCCGCTTCGACCTCCACCGGCGTCAGACTCCATTGTCCGGTCGG
AATCAAACTTCTTGGTTGTACTCTATCTTTTGGGCGTTTCAGACGGGAGT
AGAACTGGGGCAGCTCCTGGAGGAGGAGAAGTTGGGAGGTGTACCGTTGC
TCATTTTCGCCAACAAGCAGGACCTACTGAGCGCTCTTTCCGCAGATGAG
GTGGGGGGCGCTTCCGTCTCTCGATTTTGGAGATAATCGACCGTGATTGT
GCGATAGCCGTATGCCTGAAATGCGTGTAACAGCAGCAGAAAGAACTGAA
GAATAGAAGAAAAAAGAAAAAAGTGTTTGAATTGACAGAACCGTTGAGTC
GGAAATCACGGGCACTTTAAGGTCGTGATCCATGTCGCATGCGTCGGGCG
ATCGACGTCTACCCCACGTAGACACGCACGGAAACAATTCATGCTCTTAC
TCTTTCAGCCGCTTTGGGTACGTTTTGGTTGCAAAGTACAACGCACTGCT
GCAAGACCACCCTAGAGAGCAAGGCGACTTTCCACTCGTCACGCCGTCCG
AGGAATCCATTCGTATAATCACATACGCTTCTGCGTGTTTCTTTGCGCAC
GTAGATCTCGCAGGGCCTCAACCTTCACACTATCCGGGACCGCACCTGGT
TCATCCAAGCGACATCGGCCAAGACGGGGGAAGGTCTTCAAGAGGGGATG
GAGTGGATCGTCAGCCAGATTAACGATGGCCCTAAAAATGGTGGAGAGGG
AAAGTCTTAAAATGGGGATTCTACCCCGCCCGCTCTTCTCGCTCCAAACC
TTTGCATCGCCCCGGAAGACCTCGCGACCCAGTGGCACTGTCGCGGTGGC
TCTCTCGAGTAATTACAGGCCGTCGTAAGGATCGCGTGGACTCTTTCATC
GTCTCAAGGTTGGTAATTTGATATCCAGTAAAATACGTTTGACGCTTTTT
CGTTACTTTTTTCTGTGATGGTGTTTTTTTTGCGTCGTTCGTTATGTCGG
TGGTATTTCTCCGATGTCACTGGGGAAGCCAGGCACCCTGTTACGTGTAC
TGCTGTCGCTTGTTATGGTGAGTTGAAAACGCGAAGGGGGCGAAGGGGCA
AGAAACCTTAACCCCATCTCTTTTTCCGCGCCGCGATGGGCTGGAAAGCT
CCTGGCAGAATCACCGCCAGTATACTCTTGTCGCGCCACCGATCAATTGC
GTCCTCTATCTGTCCAGTTATTGCTCCGTACGTAGCCTGAAGCTGTGACA
GACTCGAAGGAGACATCTAGGGCGTGTCTATCATAACCACAGGACTTGAA
ATACGAAGGTAAACGTGCGGCGAATTATGATATGGCATATGTTGATTGGA
CGAGCGTTGATCTGTCCACTCAGGAGTAACATCAGTTTCAGTTCCAAGGC
ATTGTACCTGTAAATCGTCAGAGGGGGAAAGGGAAAAGCGCAGTGAAATA
TTGTCCAAACTCGTGACAACAGATAATCAGAGCATTCAACAAACAGCCTG
TAACCTGCCGCGTGCAAGGAGTAGAGATGGTCATCAGCATTTTGGACGAT
CCGGTAGCCAGCCAACGGAGCAGACCCCGGGAACGAAAGTGCCTTTATTC
TTAGACGCCCAAGCGTGATATGAAAACTTTATTTTTTTTCGTTTCCAAGG
CGTTTTGGGACGTTCCTGCATTATTGTCACTACTATAAGGTATTAATAAC
AACATCATCAGCTACTATTACTACTGTACCCCGGGTAAGTCTAGCTTTCA
AAACCAACTAGTCTACTAACGTTTATTTTTATTTTATCGCTCAAGACTGC
GGGAATGACAGAGCCCGTCCATAAATTTTTGCTTTGCGTAATCTCCTAGC
TCTCAGAACAAACAAATGCTTGGGGCAAACTCGGGTAATGCTATTATAGG
TACTCGGTACAGTTTTAGCTTTGAACTGTGCAAAATGATCGCAAGTTGGT
TCGGAAGATATAAAGGGTGGCGACACATAAACATTTCACTGCTCGTACCC
CCGGAAATATAGCATCGATGTGAAAGTTCAGTCAAACATTACCCGGTATA
CAGTACAAATACTC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1410958..1414421-

>mRNA_A-nodosum_M_contig10.146.2 ID=mRNA_A-nodosum_M_contig10.146.2|Name=mRNA_A-nodosum_M_contig10.146.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=627bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1410958..1414421- (Ascophyllum nodosum dioecious)
ATGGGACTCTTGACGTTGCTTCGAAAGCTCAAGAGGAGTGATCAGGAGGC
GAGGATATTGGTGCTGGGTCTCGACAACGCCGGTAAAACCACGATCCTCA
AGAAGCTTTCAGAGGAGGACATAACACAGATCATGCCCACTCAGGGATTC
AACATCAAGAGCCTGATGCACGAGGACTTCAAGTTGAACGTTTGGGATAT
CGGCGGTCAGAAGTCTATCAGGCCTTATTGGCGTAACTACTTTGACCAGA
CCGATGCGCTCATTTACGTTATCGATAGCGCTGACCGGCGACGCATGGAC
GAGACTCCATTGTCCGGTCGGAATCAAACTTCTTGGTTGTACTCTATCTT
TTGGGCGTTTCAGACGGGAGTAGAACTGGGGCAGCTCCTGGAGGAGGAGA
AGTTGGGAGGTGTACCGTTGCTCATTTTCGCCAACAAGCAGGACCTACTG
AGCGCTCTTTCCGCAGATGAGATCTCGCAGGGCCTCAACCTTCACACTAT
CCGGGACCGCACCTGGTTCATCCAAGCGACATCGGCCAAGACGGGGGAAG
GTCTTCAAGAGGGGATGGAGTGGATCGTCAGCCAGATTAACGATGGCCCT
AAAAATGGTGGAGAGGGAAAGTCTTAA
back to top