mRNA_A-nodosum_M_contig10.146.2 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: D8LJW0_ECTSI (ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW0_ECTSI) HSP 1 Score: 340 bits (872), Expect = 6.320e-111 Identity = 175/208 (84.13%), Postives = 180/208 (86.54%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDGPKNGGEGKS 624 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDIT IMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDET GVELGQLLEEEKL G+P+LIFANKQDLLSALS+DEISQGLNLHTIRDRTWFIQA SAKTGEGLQEGMEW+VSQINDG G E K+ Sbjct: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDET--------------------GVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEISQGLNLHTIRDRTWFIQAASAKTGEGLQEGMEWVVSQINDGAGGGAESKN 188
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A835ZEJ4_9STRA (ARL3, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ4_9STRA) HSP 1 Score: 306 bits (783), Expect = 1.360e-97 Identity = 155/208 (74.52%), Postives = 174/208 (83.65%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDGPKNGGEGKS 624 MGLLTLLRKLKR+DQEARILVLGLDNAGKTTILKKLSEEDIT IMPTQGFNIKSLMH++FKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSAD+RRM+ET G ELGQLLEE+KL VP+LI+ANKQDL+SA++ DEI++GLNLHTIRDR W IQ SAKTG+GLQ+GMEWIV++IND + GE K+ Sbjct: 1 MGLLTLLRKLKRTDQEARILVLGLDNAGKTTILKKLSEEDITSIMPTQGFNIKSLMHDEFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADKRRMEET--------------------GEELGQLLEEDKLSEVPVLIYANKQDLMSAMAPDEITEGLNLHTIRDRPWHIQGCSAKTGDGLQDGMEWIVTKINDASRARGEEKA 188
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7R9YCL1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCL1_9STRA) HSP 1 Score: 286 bits (733), Expect = 4.690e-90 Identity = 143/197 (72.59%), Postives = 162/197 (82.23%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQIN 591 MGLL LLRKLK +D+EARILVLGLDNAGKTTILKKLS+ED+ IMPTQGFNIKSLMH +FKLNVWDIGGQKSIRPYWRNYFDQTDAL+YVIDSADRRR++ET GVELGQLL+E+KL GVP+LIFANKQDL++A S +E++ GLNLH IRDR W +Q SAKT +GLQEGMEWIVSQ+N Sbjct: 1 MGLLNLLRKLKSTDREARILVLGLDNAGKTTILKKLSDEDVNHIMPTQGFNIKSLMHAEFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVIDSADRRRLEET--------------------GVELGQLLQEDKLLGVPVLIFANKQDLINAASDEELTDGLNLHVIRDREWTVQPCSAKTADGLQEGMEWIVSQMN 177
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7S0YMS3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YMS3_9CRYP) HSP 1 Score: 280 bits (715), Expect = 1.390e-87 Identity = 138/197 (70.05%), Postives = 160/197 (81.22%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQIN 591 MGLLTLLRKLK++D+EARILVLGLDNAGKTT LKKL++EDIT MPTQGFNIKS++H+ FKLNVWDIGGQK+IRPYWRNYFDQTDAL+YVID +DRRRMDET GVEL LLEEE+L GVPLL+FANKQDLL+A++ D++++ LNLH+IRDR W IQ SAKTGEGLQ GMEW+V IN Sbjct: 1 MGLLTLLRKLKKTDKEARILVLGLDNAGKTTALKKLADEDITTTMPTQGFNIKSVIHDGFKLNVWDIGGQKTIRPYWRNYFDQTDALVYVIDCSDRRRMDET--------------------GVELNTLLEEEQLAGVPLLLFANKQDLLNAMAPDDVTEALNLHSIRDRIWHIQPCSAKTGEGLQAGMEWMVGNIN 177
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7S0LYW6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LYW6_9CRYP) HSP 1 Score: 276 bits (707), Expect = 2.650e-86 Identity = 138/196 (70.41%), Postives = 159/196 (81.12%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQI 588 MGLLTLLRKLKR+D+EARILVLGLDNAGKTT LK+L++EDIT MPTQGFNIKS++HE FKLNVWDIGGQKSIRPYWRNYFDQTDA++YVID ADRRR+DET GVEL LLEEEKL GVP+LIFANK+DL++A+S DE+++ L+LH IRDRTW IQ SAKT EGLQ+GMEW+V I Sbjct: 7 MGLLTLLRKLKRTDKEARILVLGLDNAGKTTALKRLADEDITHTMPTQGFNIKSVVHEGFKLNVWDIGGQKSIRPYWRNYFDQTDAMVYVIDCADRRRIDET--------------------GVELQALLEEEKLAGVPVLIFANKKDLMNAMSPDELTEVLHLHDIRDRTWHIQHCSAKTSEGLQDGMEWLVKNI 182
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7S3HPP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPP9_9STRA) HSP 1 Score: 274 bits (701), Expect = 1.810e-85 Identity = 140/199 (70.35%), Postives = 160/199 (80.40%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDG 597 MGLLTLLRKLK+SDQEAR+LVLGLDN+GKTTILKKLS+EDI+QIMPTQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRNY+DQTDALIYVIDSADRRRM+ET GVEL QLL+EEKL VPLLI ANKQDL++AL+ EI+ L L+ +R+RTW I SA+ G GLQEGMEW++ +IN G Sbjct: 1 MGLLTLLRKLKKSDQEARLLVLGLDNSGKTTILKKLSDEDISQIMPTQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNYYDQTDALIYVIDSADRRRMEET--------------------GVELQQLLDEEKLANVPLLIMANKQDLMNALTPGEITAELGLNEMRERTWQILPCSARDGTGLQEGMEWLLGEINSG 179
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: K3WN62_GLOUD (Uncharacterized protein n=32 Tax=Oomycota TaxID=4762 RepID=K3WN62_GLOUD) HSP 1 Score: 273 bits (699), Expect = 4.400e-85 Identity = 141/207 (68.12%), Postives = 160/207 (77.29%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQINDGPKNGGEGK 621 MGLL LLRKLK+ D EARILVLGLDN GKTTILKKLSEEDI+ IMPTQGFN+KSL + FKLN+WDIGGQK+IRPYWRNY++QTDALIYVIDSADRRR++ET G+EL LLEEEKL VP+L+F+NKQDLL+AL + EIS LNL TIRDRTW IQA SAKTGEGLQEGMEWIV+ ++ G E K Sbjct: 1 MGLLNLLRKLKKDDSEARILVLGLDNGGKTTILKKLSEEDISHIMPTQGFNVKSLQVDGFKLNMWDIGGQKTIRPYWRNYYEQTDALIYVIDSADRRRLEET--------------------GMELVTLLEEEKLANVPILVFSNKQDLLNALPSSEISTALNLATIRDRTWHIQACSAKTGEGLQEGMEWIVNTMSSSAGRGREAK 187
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A7J7PXL4_9CHLO (ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7PXL4_9CHLO) HSP 1 Score: 272 bits (696), Expect = 8.720e-85 Identity = 138/196 (70.41%), Postives = 156/196 (79.59%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQI 588 MGLL LLRKL++S+ EARILVLGLDNAGKTTILKKLS+EDI+ IMPTQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRN FD TDAL+YVIDSADR+R+DE GVEL QLLEEEK+ GVP+L+ ANKQDLL+ALSAD+I++ LNL IRDR W IQ SAK G GLQEGMEW+V Q+ Sbjct: 1 MGLLALLRKLRKSEGEARILVLGLDNAGKTTILKKLSDEDISTIMPTQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNNFDSTDALVYVIDSADRKRIDEC--------------------GVELAQLLEEEKMNGVPVLVLANKQDLLAALSADDIAESLNLFLIRDRPWQIQGCSAKDGAGLQEGMEWLVKQV 176
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: A0A0G4ETW3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ETW3_VITBC) HSP 1 Score: 271 bits (694), Expect = 1.790e-84 Identity = 136/196 (69.39%), Postives = 160/196 (81.63%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQI 588 MGLLTLLRKLKRSD EARILVLGLDN+GKTTILKKLS+EDI+ IMPTQGFNIKSL+ FKLNVWDIGGQK+IR YW+NYF+ TDALIYVIDSADRRR++E+ G EL +LL+++KLGG+PLL+FANKQDLL ALSA EI++ L+LH IRDRTW IQA SAKTG+GLQ+GMEW+V+ + Sbjct: 1 MGLLTLLRKLKRSDSEARILVLGLDNSGKTTILKKLSDEDISHIMPTQGFNIKSLVQGSFKLNVWDIGGQKTIRAYWQNYFEGTDALIYVIDSADRRRLEES--------------------GEELNELLQQDKLGGIPLLVFANKQDLLQALSAQEIAEQLSLHAIRDRTWNIQACSAKTGDGLQDGMEWLVTTL 176
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Match: L1JN43_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JN43_GUITC) HSP 1 Score: 271 bits (693), Expect = 2.610e-84 Identity = 136/197 (69.04%), Postives = 155/197 (78.68%), Query Frame = 1 Query: 1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETPLSGRNQTSWLYSIFWAFQTGVELGQLLEEEKLGGVPLLIFANKQDLLSALSADEISQGLNLHTIRDRTWFIQATSAKTGEGLQEGMEWIVSQIN 591 MGLLTLLRKLK+S++E RILVLGLDNAGKTT LKKL++EDIT MPTQGFNIKS++HE FKLNVWDIGGQK+IRPYWRNYFDQTDAL++VID +D RRMDET GVEL QLL+EEKL GVPLLIFANKQDL++A+ DE+++ L L IRDR W IQ SAKTGEGLQ GMEW+V IN Sbjct: 1 MGLLTLLRKLKKSEKEFRILVLGLDNAGKTTALKKLADEDITHTMPTQGFNIKSVIHEGFKLNVWDIGGQKTIRPYWRNYFDQTDALVFVIDCSDHRRMDET--------------------GVELNQLLDEEKLAGVPLLIFANKQDLMNAMGPDEVTEVLGLTNIRDRAWHIQPCSAKTGEGLQGGMEWLVKNIN 177 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.146.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.146.2 >prot_A-nodosum_M_contig10.146.2 ID=prot_A-nodosum_M_contig10.146.2|Name=mRNA_A-nodosum_M_contig10.146.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=209bp MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFback to top mRNA from alignment at A-nodosum_M_contig10:1410958..1414421- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10.146.2 ID=mRNA_A-nodosum_M_contig10.146.2|Name=mRNA_A-nodosum_M_contig10.146.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3464bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1410958..1414421- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1410958..1414421- >mRNA_A-nodosum_M_contig10.146.2 ID=mRNA_A-nodosum_M_contig10.146.2|Name=mRNA_A-nodosum_M_contig10.146.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=627bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1410958..1414421- (Ascophyllum nodosum dioecious)back to top |