Homology
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
D7FM45_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM45_ECTSI)
HSP 1 Score: 434 bits (1117), Expect = 1.890e-150
Identity = 216/252 (85.71%), Postives = 235/252 (93.25%), Query Frame = 1
Query: 436 MPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTFGGEGQRFGDIGGGGWGGGAGVDDDG 1191
MPSSEPMVPY R+G+ VATWMPVSQ LQQSRIIMVGKFID++YANQLIAMLLYHEK DP KKISLYFN PGALIRPAL+VYDTLMHMGPE+STLNLGLATGMVSFLCAAGKRG+RYALPN+RFLMQRTGMEDPYQGQASDIGVEVQNVM+GNS+ME+ALQRITGHT+AKIH+DFQRDFYLSS+EAVQYGIIDEVLLPR K RQD+YKERG++GGPR LND+PDFGTFGGEGQR+GD GGGW V DDG
Sbjct: 1 MPSSEPMVPYTRDGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEVQNVMRGNSKMEEALQRITGHTVAKIHEDFQRDFYLSSAEAVQYGIIDEVLLPREKTRQDMYKERGIMGGPRVLNDEPDFGTFGGEGQRYGDKTGGGWXXXXXVSDDG 252
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
A0A835YH32_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH32_9STRA)
HSP 1 Score: 313 bits (802), Expect = 5.750e-102
Identity = 164/252 (65.08%), Postives = 198/252 (78.57%), Query Frame = 1
Query: 415 AKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPREL--NDDPDFGTFGGEGQRFGDIGGGGWG 1164
A R +RMPS+EP VPYK G+ ATW+ V+QRLQ+SRI+MVGKFIDD+YANQLIAM+LY EKE K +SLYFNSPGA +RPA++V+DT+ M STLNLGLATGMVSFLCAAG +G+R+ALPNARFLMQRTGMED Y+GQASDIG+EV ++K N+RME+AL ITGHT KI DFQRDFYLS++EAVQYG+ID+VL+PR K R+ + + L G + DP FG FGGE QR+G GGGWG
Sbjct: 41 AYRQDIRMPSTEPQVPYKPPGSDQATWVGVNQRLQRSRILMVGKFIDDEYANQLIAMMLYLEKESRDKPVSLYFNSPGANLRPAMAVFDTMQQMAFPTSTLNLGLATGMVSFLCAAGDKGKRFALPNARFLMQRTGMEDAYRGQASDIGIEVGQMVKKNNRMEEALTAITGHTRDKIRADFQRDFYLSAAEAVQYGVIDKVLMPRDKTRK-MESTKDLQFGDNAFTRSQDPTFGEFGGEDQRYGGQKGGGWG 291
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
A0A6H5L521_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L521_9PHAE)
HSP 1 Score: 280 bits (716), Expect = 3.980e-90
Identity = 148/214 (69.16%), Postives = 171/214 (79.91%), Query Frame = 1
Query: 244 AASMITRRGWLILMLGVARAPYFSNAFISSHPP----LSRPLGRKSREMA-GERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEV 870
+++ T G +L+ +R + AF+ S L+ G+K + + R ++ A +RDV+RMPSSEPMVPY REG+ VATWMPVSQ LQQSRIIMVGKFID++YANQLIAMLLYHEK DP KKISLYFN PGALIRPAL+VYDTLMHMGPE+STLNLGLATGMVSFLCAAGKRG+RYALPN+RFLMQRTGMEDPYQGQASDIGVEV
Sbjct: 3 SSAWATLTGMSLLVAAASRC-WVCEAFVPSTAARAAALAATTGQKQQNLQLRRRSDVTLAAATRRDVVRMPSSEPMVPYTREGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEV 215
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
A0A7S2KWW7_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWW7_9STRA)
HSP 1 Score: 242 bits (617), Expect = 1.100e-73
Identity = 131/252 (51.98%), Postives = 176/252 (69.84%), Query Frame = 1
Query: 427 VLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDL-YKERGLVGGPRELNDDPD--FGTFGG-EGQRFGDIGGGGWG 1164
++ MP PMVP++ G+ A ++ + RL + RI+++GKFID Q ANQ+I++LLY +KEDP KKI+LYFN PGA +RPAL+VYDT+M +ISTLNLGLATGM S LC G +G R A+PN+RFL+QR G+E P+QGQASDIG+EV N+ K N ME+ L ++TG ++ ++ D +RDFYLSS EAV YG+ID VL+P+ K + + YK G + DD D G F G E QR+ D GGG+G
Sbjct: 58 LVMMPQGTPMVPWQPPGSDYAQFVDIYSRLYRERIMLIGKFIDQQEANQIISILLYLKKEDPDKKITLYFNCPGAELRPALAVYDTIMQCKETCDISTLNLGLATGMASLLCGCGTKGMRAAMPNSRFLLQRVGLERPFQGQASDIGLEVSNMKKSNDNMERELAKMTGRSVTEVRNDMKRDFYLSSDEAVTYGLIDHVLVPKTKGTEIVEYKRDPWTGRAIPVTDDRDVDLGNFEGTEEQRYQDQKGGGFG 309
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
A0A7S2BG56_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BG56_9STRA)
HSP 1 Score: 241 bits (616), Expect = 1.300e-73
Identity = 116/213 (54.46%), Postives = 165/213 (77.46%), Query Frame = 1
Query: 397 QAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGK 1035
Q ++ A+R + MP++EPMVP+K +G + ++P+SQRL + RI+++G F+D++ AN LIA+LLY +++DP K+ISLYFN PGAL++P L+VYDTL M I TLNLGLATGM +FLC+AG G R+ LPNARFL+Q+TG++DP+QGQA DIG++V + + N RM QAL ++TG+T K+ +D RDFYLS+ EA +YG+ID+VL+P K
Sbjct: 44 QVTAVQARRSTVSMPTTEPMVPWKPQGMESHQFVPISQRLYRERIVILGNFLDEEAANNLIAVLLYMKQDDPNKQISLYFNVPGALLKPTLAVYDTLKSMECPIMTLNLGLATGMGAFLCSAGTPGLRFCLPNARFLLQKTGLDDPFQGQAVDIGLKVSDNIADNKRMAQALAQMTGNTYDKVAEDLNRDFYLSAFEAREYGLIDKVLIPERK 256
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
F0Y3R0_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3R0_AURAN)
HSP 1 Score: 233 bits (595), Expect = 1.200e-71
Identity = 119/230 (51.74%), Postives = 167/230 (72.61%), Query Frame = 1
Query: 346 SRPLGRKSREMAGERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGK 1035
S+ +G + A G + ++ A++ S VPY+ G+ ++ + QRL + RI++VG F+D++ AN LIA+LLY EDP K IS+YFN PGAL++P L+VYDTL + ++T+NLGLATGM +FLC AG +G RYALPNARFLMQRTG++DP+QGQASDIG+ V+ ++ N RME+AL ++TG++I IHQD +RDFYLS+ EAVQYG+ID+VL+P+ K
Sbjct: 3 SKAVGHSRHQAAPPAGGEGLAKASRY------SGRTSVPYQPPGSDSHMFVDIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIYFNVPGALMKPCLAVYDTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQRTGLDDPFQGQASDIGLVVRENLRDNDRMEKALVKMTGNSIDVIHQDMKRDFYLSAHEAVQYGLIDKVLIPQPK 226
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
A0A7S2WMH7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMH7_9STRA)
HSP 1 Score: 236 bits (601), Expect = 1.540e-71
Identity = 118/238 (49.58%), Postives = 172/238 (72.27%), Query Frame = 1
Query: 400 AVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDF 1107
+ S+ A R+ ++MP+S PMVPYK G+ A ++ + R+ + RI+ +GKFID+ AN++I+++LY KEDP+ I+LYFN PGA++RPAL+VYD ++ EI+T+NLGL TGM +FLC +G +G R A+PN+RFL+QRTG++ P+QGQASDIG+EV N+ K N RME L ++TG ++++ D +RDFYLSS EAVQYG+ID+VLLP + R ++ L G E +DD +
Sbjct: 48 STSLFATRETIKMPTSTPMVPYKPPGSDYAQFVDIYSRMYRDRIMFIGKFIDENAANEIISIILYLRKEDPSGPITLYFNVPGAMLRPALAVYDLIVQTRENCEINTVNLGLCTGMGAFLCGSGTKGRRCAMPNSRFLLQRTGLDAPFQGQASDIGLEVANLKKMNDRMEYELSKMTGQPVSQVQLDLKRDFYLSSEEAVQYGLIDKVLLPSPQKRATQGQDTDL--GAFEGDDDQKY 283
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
A0A7S2WJC8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJC8_9STRA)
HSP 1 Score: 234 bits (597), Expect = 5.260e-71
Identity = 124/236 (52.54%), Postives = 174/236 (73.73%), Query Frame = 1
Query: 421 RDVLRMPSSEPMVPYKREGA--QVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPE--ISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTF 1116
R + MPS+EPMVP+K G Q ++P+SQRL + RII++G F+D+Q +N LIA LLY ++E+ K+ISLY N PGAL++P ++VYDTLM E I T+NLGLATGM +FLCAAG RG+R ALPN+RFL+Q+TG++DPYQGQA DIG++V++ + N M + L ++TGHT KI +D RDFYLSS EA +YG++D+VLLP+ K+ ++ + + G R L +D +FG+F
Sbjct: 42 RSPISMPSTEPMVPWKPPGGGYQDTYFIPISQRLYRDRIIVLGDFLDEQRSNNLIATLLYLKQENKRKQISLYINIPGALMKPTMAVYDTLMTEFQETPIMTVNLGLATGMAAFLCAAGTRGKRCALPNSRFLLQKTGLDDPYQGQALDIGLKVRDNIVDNQNMARELAKLTGHTYDKIQRDLSRDFYLSSFEAREYGLVDKVLLPKIKNDLNVITD---LNGRRILMEDNNFGSF 274
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
A0A6U3QDB9_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QDB9_9STRA)
HSP 1 Score: 233 bits (593), Expect = 2.030e-70
Identity = 119/234 (50.85%), Postives = 165/234 (70.51%), Query Frame = 1
Query: 358 GRKSR-EMAGERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYK 1056
G SR +++ VQ ++ A+R MPS EP+VPY + ++P+SQRL R+I++G F+D++ AN LIA LLY +KED KKISLY N PGAL++P+L+VYDTL + I+TLNLGLATGM +FLC AG +G R+ALPNARFL+Q+TG++DPYQGQA DIG++V + + N R+ ++TG+ I K+ +D +RDFYLS+ EA +YG+ID VLLP K D +
Sbjct: 31 GLSSRFDVSASARVQTTALNARRMTPSMPSGEPLVPYSPSAVEGHQYLPISQRLLMDRVIVLGSFLDEEQANNLIATLLYLQKEDREKKISLYMNIPGALLKPSLAVYDTLKSLKCPITTLNLGLATGMGAFLCGAGTKGYRFALPNARFLLQKTGLDDPYQGQAVDIGLKVADNIADNYRVAAEFAKMTGNPIDKVAKDLERDFYLSAFEAREYGLIDRVLLPEQKYNSDTSR 264
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match:
A0A7R9YXR7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YXR7_9STRA)
HSP 1 Score: 227 bits (579), Expect = 6.160e-68
Identity = 118/237 (49.79%), Postives = 161/237 (67.93%), Query Frame = 1
Query: 430 LRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTFGGEGQR 1134
+ MP+ PMVPYK G + ++ + R+ + RI+ + +FID+ +N +I+ LLY KEDP + ++LYFN PGAL+RP L+VYD L + EIST+NLGL TGM + LC AG +G+R A+PNARFL+QR GME P+QGQASDIG+EV NV N R+E + R+TG T A++ +D +RDFYLSS EAV+YG+ID+VLLP ++R GG D D GTF GE ++
Sbjct: 78 ITMPTQTPMVPYKPPGQDYSQFIDLPSRMYRDRIMFISQFIDEDASNNIISTLLYLRKEDPNEPLNLYFNVPGALLRPGLAVYDLLCQLRQDCEISTVNLGLCTGMGALLCGAGTKGKRCAMPNARFLLQRVGMESPFQGQASDIGLEVSNVKVWNDRLEGEIARMTGQTAARVREDMRRDFYLSSEEAVRYGLIDKVLLP-------APQKRATAGG------DVDLGTFEGEDEQ 301
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.89e-150 / Id = 85.71 Expect = 5.75e-102 / Id = 65.08 Expect = 3.98e-90 / Id = 69.16 Expect = 1.10e-73 / Id = 51.98 Expect = 1.30e-73 / Id = 54.46 Expect = 1.20e-71 / Id = 51.74 Expect = 1.54e-71 / Id = 49.58 Expect = 5.26e-71 / Id = 52.54 Expect = 2.03e-70 / Id = 50.85 Expect = 6.16e-68 / Id = 49.79 Sequence D7FM45_ECTSI A0A835YH32_9STRA A0A6H5L521_9PHAE A0A7S2KWW7_9STRA A0A7S2BG56_9STRA F0Y3R0_AURAN A0A7S2WMH7_9STRA A0A7S2WJC8_9STRA A0A6U3QDB9_9STRA A0A7R9YXR7_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Seed ortholog 44056.XP_009034839.1 PFAMs CLP_protease Model size 1191 Max annot lvl 2759|Eukaryota KEGG ko ko:K01358 KEGG Pathway ko04112,ko04212,map04112,map04212 Hectar predicted targeting category chloroplast GOs GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0010287,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071840 Exons 5 Evalue 1.35e-73 EggNOG OGs COG0740@1|root,KOG0840@2759|Eukaryota EC 3.4.21.92 Description serine-type endopeptidase activity Cds size 939 COG category OU BRITE ko00000,ko00001,ko01000,ko01002
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866353.3484652-CDS-A-nodosum_M_contig10:1172947..1173073 1680866353.3484652-CDS-A-nodosum_M_contig10:1172947..1173073 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10 1172948..1173073 - 1680866353.3652136-CDS-A-nodosum_M_contig10:1173375..1173573 1680866353.3652136-CDS-A-nodosum_M_contig10:1173375..1173573 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10 1173376..1173573 - 1680866353.3733208-CDS-A-nodosum_M_contig10:1174240..1174534 1680866353.3733208-CDS-A-nodosum_M_contig10:1174240..1174534 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10 1174241..1174534 - 1680866353.3816257-CDS-A-nodosum_M_contig10:1174974..1175091 1680866353.3816257-CDS-A-nodosum_M_contig10:1174974..1175091 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10 1174975..1175091 - 1680866353.3990972-CDS-A-nodosum_M_contig10:1175568..1175772 1680866353.3990972-CDS-A-nodosum_M_contig10:1175568..1175772 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10 1175569..1175772 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866353.4087553-UTR-A-nodosum_M_contig10:1175772..1176024 1680866353.4087553-UTR-A-nodosum_M_contig10:1175772..1176024 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig10 1175773..1176024 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.129.2
>prot_A-nodosum_M_contig10.129.2 ID=prot_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=313bp
MITRRGWLILMLGVARAPYFSNAFISSHPPLSRPLGRKSREMAGERGVQA back to top mRNA from alignment at A-nodosum_M_contig10:1172948..1176024-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.129.2 ID=mRNA_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3077bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1172948..1176024- (Ascophyllum nodosum dioecious)CTATATTCATGTTCCATATTTTAGCAGGTTTCCCTGCCTTTGGGCTCTCT
CTACTCCTTGATGTTTGCCGGCGAGCTTGCTTCGCCCGGACGACCAAGCC
GGCGTACCCAGCCGAATCTCTCTCTGTTTACGTTTTTATAGTGACTCACG
AAAGCGGGACGCCATAGTCGTAACGAAAAAAGAAGGGAGACATTTCGTCG
TGAGGAAACATCCGTGCTGTGGTGCTCCAACATAGAACACCCTGCAGCAA
GC ATGATCACTCGGCGGGGGTGGCTGATCTTAATGCTGGGCGTAGCGAGG
GCGCCATATTTTTCCAATGCATTCATCTCTTCTCATCCACCGCTTTCACG
ACCACTAGGAAGGAAATCGCGGGAAATGGCTGGAGAAAGGGGCGTACAGG
CCGTGTCCATGGCAGCCAAACGCGACGTTCTTCGCATGCCCAGCTCGGAG
CCTATG GTATGGTATAGTGCTGGTTGACGCCAGTTGGGGGAGGTTCAGCG
GGAACTAGAGGACGCGCGGCGGCTGTTAGCCGTTGTTGTGTTACATTAGT
CAGTCGCACCGATACTATACCTAACAACAAACTCGACGCAAAGAATATTG
ATTGATCATGTTGCGCAGCTTGAGCAAGACAACAACCTCTTCAGATACTC
TTGCTTACAGTATTAGTCACGATCCATTGATCAAATAATATGCACGAGCA
CTTGTACCTGAGTTTGCATAGCTCAAGGAAGACCCCGCAGCTAAACGTCC
ACGAGTATCAACGCCCTCTTATAACAGTCCCGTTTTGTAGCGGGCAAGGA
TAACTTTTGAACCTCCATCTAATCGACCGCGCGCTCAACAACGACTCATA
TCTGTAGCTCTTTTTTCTTTTTACAACATACACACTTGTAATACAGCACT
GCGCTGCTGGCATGCGCCCCACGTGTTCTCAAGGTGCCCTACAAACGAGA
GGGCGCTCAGGTGGCAACTTGGATGCCCGTCAGCCAGCGCTTGCAGCAGT
CTCGTATTATAATGGTGGGCAAGTTCATCGACGATCAGTACGCCAATCAG
GTTCGGGAAAGAGGAACTATGCAGGATCTGGACGAATATGCAAAATGCCG
GAAGTCGTCGCTTTTTACTCAGTTCCTTGTCCATGGGTTTACATTTGTTG
CGCAGGATCGTGCTCCGTACACAGCAGTCTCTAGTCTGTAAAATCGACAT
CAACTGGAAAACACTCAGTACCCTTTTAGATGTCGAAATCGATCCGCCTT
CGTGTGGTCCTGTTCGTTACGGAGGATCATCTCGATCTCGTCTCGCCGCG
AATTTCCCCGCGTTCGCCTGATTCCCAGTAGTGGCGTTAATATCAATATA
TAGATGCCTTTCCTCCGACTGTGGTGAGAAGAAAGCCACGTTTTTGTATA
CCGTCAAGCTTAACGATAACCCTGGCTTCTTGCAACAACCCCTCCCATAA
CTATATACTGTGTTGCATTTCCATTTGATCGTCGCGGCAGCTGATCGCCA
TGCTCCTGTACCACGAGAAGGAAGACCCCACTAAAAAAATATCCCTGTAC
TTCAACTCCCCTGGGGCGCTCATCCGCCCGGCGCTCTCCGTGTACGACAC
CTTGATGCACATGGGGCCGGAGATCAGCACCCTAAATCTCGGCCTCGCGA
CGGGGATGGTGTCCTTCCTTTGCGCGGCGGGAAAGCGCGGAGAGCGTTAC
GCCTTGCCCAACGCCCGGTTCTTGATGCAGCGAACGGGAATGGAGGATCC
TTACCAGGGCCAGGCGTCCGACATTGGGGTAGAG GTGCGTTCATCACGAT
GATGTTGCAACCCTATCATCGATTTGAGAAACGATTGAGTTGACCGTGGA
CGGACGGTAAGCGAGCGAATTCGTAGCGGGTCCTGCTACGGGTGTGGAGG
CGTTTTTTGCGGTGTCGCGGCAGTGGATGTGATGGATCCGTTAAGCTCCC
GAGATATGTTTGTGGCTGTAAGCTTGCTCCTCGATGAAGTGAAGCAACAC
CGGGTTGGATCGCAGGTATCTTCGTTAATTTTCGTCCTCTTCAAGCTCCA
AACGACTTAAAGACTAGAAAACACAAGAAGTCCACAACGCCAGCCCTTGC
CAAACGCTACCTCCGACCAACCAGCGATTACCACGAAATTACCTCCCCCC
CGAGGGAATTTGCCTGCCGACACTATTACAGTGGATATCTGAGCAACTTA
GGGGCGTTGACGCTGCGGGCAGGACGGAGAATAGGTTAAGAAGATATCGA
CGGGCATTCAAGCATGGGTAGCACGCCGTAGGACCTCTCCGCAATTAGTA
TGAGAATGCTCTGTTGGTAAGTCTATCAATGCTGCTGTTGTCGTACTCTC
GCAACCTTCGACAGCAGCTTGCCTGGTTTCCTTCTATTCTTGCCGCCTTA
ACTTGAACTGTACTGTACTGTACCTACTGTACCGCTCTTTGCGGAGGCAA
GGTGCAAAATGTTATGAAGGGGAACTCCAGGATGGAGCAAGCTTTGCAGC
GGATCACGGGCCACACCATAGCCAAGATCCACCAAGATTTTCAGCGTGAC
TTTTACCTGTCGTCGTCAGAGGCCGTGCAGTACGGCATCATCGACGAGGT
GCTCTTGCCGAGAGGGAAAGACCGCCAAGACCTCTACAAGGAGCGAGGG G
TGAGAGGACTCCGGCTGCCGGAGGTTTCCGCGTGTTCCCCCCGATGCTAC
CCTTTGTAAGAACATCAACTTACTCGCGCAGTCAAAAACACGTCTCCAAA
ATTTCGCAAGTATTACATTTTGCCCCTTGTACCGACGCTGCTTCTAACGA
CTACGCGAGTCGTGGGCCTTGAACGCCTCGCCGGTTGATTGATCGATGAT
CGTGGATGCATCAAATCGTATGTGTGTCTCACTCGTTACGTTTATCTGAG
GCGCGCTGCCTACCGTTGTCCGTCGCTGTGATCCTCCATGTACTGCTGCA
GCTGGTGGGCGGCCCGCGGGAGCTCAACGACGATCCGGACTTCGGCACTT
TTGGAGGCGAAGGACAGCGTTTCGGGGACATCGGGGGTGGGGGGTGGGGG
GGCGGGGCAGGGGTCGATGACGACGGC back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1172948..1176024-
>mRNA_A-nodosum_M_contig10.129.2 ID=mRNA_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=939bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1172948..1176024- (Ascophyllum nodosum dioecious) back to top