mRNA_A-nodosum_M_contig10.129.2 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: D7FM45_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM45_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 1.890e-150 Identity = 216/252 (85.71%), Postives = 235/252 (93.25%), Query Frame = 1 Query: 436 MPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTFGGEGQRFGDIGGGGWGGGAGVDDDG 1191 MPSSEPMVPY R+G+ VATWMPVSQ LQQSRIIMVGKFID++YANQLIAMLLYHEK DP KKISLYFN PGALIRPAL+VYDTLMHMGPE+STLNLGLATGMVSFLCAAGKRG+RYALPN+RFLMQRTGMEDPYQGQASDIGVEVQNVM+GNS+ME+ALQRITGHT+AKIH+DFQRDFYLSS+EAVQYGIIDEVLLPR K RQD+YKERG++GGPR LND+PDFGTFGGEGQR+GD GGGW V DDG Sbjct: 1 MPSSEPMVPYTRDGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEVQNVMRGNSKMEEALQRITGHTVAKIHEDFQRDFYLSSAEAVQYGIIDEVLLPREKTRQDMYKERGIMGGPRVLNDEPDFGTFGGEGQRYGDKTGGGWXXXXXVSDDG 252
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A835YH32_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH32_9STRA) HSP 1 Score: 313 bits (802), Expect = 5.750e-102 Identity = 164/252 (65.08%), Postives = 198/252 (78.57%), Query Frame = 1 Query: 415 AKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPREL--NDDPDFGTFGGEGQRFGDIGGGGWG 1164 A R +RMPS+EP VPYK G+ ATW+ V+QRLQ+SRI+MVGKFIDD+YANQLIAM+LY EKE K +SLYFNSPGA +RPA++V+DT+ M STLNLGLATGMVSFLCAAG +G+R+ALPNARFLMQRTGMED Y+GQASDIG+EV ++K N+RME+AL ITGHT KI DFQRDFYLS++EAVQYG+ID+VL+PR K R+ + + L G + DP FG FGGE QR+G GGGWG Sbjct: 41 AYRQDIRMPSTEPQVPYKPPGSDQATWVGVNQRLQRSRILMVGKFIDDEYANQLIAMMLYLEKESRDKPVSLYFNSPGANLRPAMAVFDTMQQMAFPTSTLNLGLATGMVSFLCAAGDKGKRFALPNARFLMQRTGMEDAYRGQASDIGIEVGQMVKKNNRMEEALTAITGHTRDKIRADFQRDFYLSAAEAVQYGVIDKVLMPRDKTRK-MESTKDLQFGDNAFTRSQDPTFGEFGGEDQRYGGQKGGGWG 291
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A6H5L521_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L521_9PHAE) HSP 1 Score: 280 bits (716), Expect = 3.980e-90 Identity = 148/214 (69.16%), Postives = 171/214 (79.91%), Query Frame = 1 Query: 244 AASMITRRGWLILMLGVARAPYFSNAFISSHPP----LSRPLGRKSREMA-GERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEV 870 +++ T G +L+ +R + AF+ S L+ G+K + + R ++ A +RDV+RMPSSEPMVPY REG+ VATWMPVSQ LQQSRIIMVGKFID++YANQLIAMLLYHEK DP KKISLYFN PGALIRPAL+VYDTLMHMGPE+STLNLGLATGMVSFLCAAGKRG+RYALPN+RFLMQRTGMEDPYQGQASDIGVEV Sbjct: 3 SSAWATLTGMSLLVAAASRC-WVCEAFVPSTAARAAALAATTGQKQQNLQLRRRSDVTLAAATRRDVVRMPSSEPMVPYTREGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEV 215
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7S2KWW7_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWW7_9STRA) HSP 1 Score: 242 bits (617), Expect = 1.100e-73 Identity = 131/252 (51.98%), Postives = 176/252 (69.84%), Query Frame = 1 Query: 427 VLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDL-YKERGLVGGPRELNDDPD--FGTFGG-EGQRFGDIGGGGWG 1164 ++ MP PMVP++ G+ A ++ + RL + RI+++GKFID Q ANQ+I++LLY +KEDP KKI+LYFN PGA +RPAL+VYDT+M +ISTLNLGLATGM S LC G +G R A+PN+RFL+QR G+E P+QGQASDIG+EV N+ K N ME+ L ++TG ++ ++ D +RDFYLSS EAV YG+ID VL+P+ K + + YK G + DD D G F G E QR+ D GGG+G Sbjct: 58 LVMMPQGTPMVPWQPPGSDYAQFVDIYSRLYRERIMLIGKFIDQQEANQIISILLYLKKEDPDKKITLYFNCPGAELRPALAVYDTIMQCKETCDISTLNLGLATGMASLLCGCGTKGMRAAMPNSRFLLQRVGLERPFQGQASDIGLEVSNMKKSNDNMERELAKMTGRSVTEVRNDMKRDFYLSSDEAVTYGLIDHVLVPKTKGTEIVEYKRDPWTGRAIPVTDDRDVDLGNFEGTEEQRYQDQKGGGFG 309
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7S2BG56_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BG56_9STRA) HSP 1 Score: 241 bits (616), Expect = 1.300e-73 Identity = 116/213 (54.46%), Postives = 165/213 (77.46%), Query Frame = 1 Query: 397 QAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGK 1035 Q ++ A+R + MP++EPMVP+K +G + ++P+SQRL + RI+++G F+D++ AN LIA+LLY +++DP K+ISLYFN PGAL++P L+VYDTL M I TLNLGLATGM +FLC+AG G R+ LPNARFL+Q+TG++DP+QGQA DIG++V + + N RM QAL ++TG+T K+ +D RDFYLS+ EA +YG+ID+VL+P K Sbjct: 44 QVTAVQARRSTVSMPTTEPMVPWKPQGMESHQFVPISQRLYRERIVILGNFLDEEAANNLIAVLLYMKQDDPNKQISLYFNVPGALLKPTLAVYDTLKSMECPIMTLNLGLATGMGAFLCSAGTPGLRFCLPNARFLLQKTGLDDPFQGQAVDIGLKVSDNIADNKRMAQALAQMTGNTYDKVAEDLNRDFYLSAFEAREYGLIDKVLIPERK 256
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: F0Y3R0_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3R0_AURAN) HSP 1 Score: 233 bits (595), Expect = 1.200e-71 Identity = 119/230 (51.74%), Postives = 167/230 (72.61%), Query Frame = 1 Query: 346 SRPLGRKSREMAGERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGK 1035 S+ +G + A G + ++ A++ S VPY+ G+ ++ + QRL + RI++VG F+D++ AN LIA+LLY EDP K IS+YFN PGAL++P L+VYDTL + ++T+NLGLATGM +FLC AG +G RYALPNARFLMQRTG++DP+QGQASDIG+ V+ ++ N RME+AL ++TG++I IHQD +RDFYLS+ EAVQYG+ID+VL+P+ K Sbjct: 3 SKAVGHSRHQAAPPAGGEGLAKASRY------SGRTSVPYQPPGSDSHMFVDIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIYFNVPGALMKPCLAVYDTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQRTGLDDPFQGQASDIGLVVRENLRDNDRMEKALVKMTGNSIDVIHQDMKRDFYLSAHEAVQYGLIDKVLIPQPK 226
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7S2WMH7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMH7_9STRA) HSP 1 Score: 236 bits (601), Expect = 1.540e-71 Identity = 118/238 (49.58%), Postives = 172/238 (72.27%), Query Frame = 1 Query: 400 AVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDF 1107 + S+ A R+ ++MP+S PMVPYK G+ A ++ + R+ + RI+ +GKFID+ AN++I+++LY KEDP+ I+LYFN PGA++RPAL+VYD ++ EI+T+NLGL TGM +FLC +G +G R A+PN+RFL+QRTG++ P+QGQASDIG+EV N+ K N RME L ++TG ++++ D +RDFYLSS EAVQYG+ID+VLLP + R ++ L G E +DD + Sbjct: 48 STSLFATRETIKMPTSTPMVPYKPPGSDYAQFVDIYSRMYRDRIMFIGKFIDENAANEIISIILYLRKEDPSGPITLYFNVPGAMLRPALAVYDLIVQTRENCEINTVNLGLCTGMGAFLCGSGTKGRRCAMPNSRFLLQRTGLDAPFQGQASDIGLEVANLKKMNDRMEYELSKMTGQPVSQVQLDLKRDFYLSSEEAVQYGLIDKVLLPSPQKRATQGQDTDL--GAFEGDDDQKY 283
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7S2WJC8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJC8_9STRA) HSP 1 Score: 234 bits (597), Expect = 5.260e-71 Identity = 124/236 (52.54%), Postives = 174/236 (73.73%), Query Frame = 1 Query: 421 RDVLRMPSSEPMVPYKREGA--QVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPE--ISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTF 1116 R + MPS+EPMVP+K G Q ++P+SQRL + RII++G F+D+Q +N LIA LLY ++E+ K+ISLY N PGAL++P ++VYDTLM E I T+NLGLATGM +FLCAAG RG+R ALPN+RFL+Q+TG++DPYQGQA DIG++V++ + N M + L ++TGHT KI +D RDFYLSS EA +YG++D+VLLP+ K+ ++ + + G R L +D +FG+F Sbjct: 42 RSPISMPSTEPMVPWKPPGGGYQDTYFIPISQRLYRDRIIVLGDFLDEQRSNNLIATLLYLKQENKRKQISLYINIPGALMKPTMAVYDTLMTEFQETPIMTVNLGLATGMAAFLCAAGTRGKRCALPNSRFLLQKTGLDDPYQGQALDIGLKVRDNIVDNQNMARELAKLTGHTYDKIQRDLSRDFYLSSFEAREYGLVDKVLLPKIKNDLNVITD---LNGRRILMEDNNFGSF 274
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A6U3QDB9_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QDB9_9STRA) HSP 1 Score: 233 bits (593), Expect = 2.030e-70 Identity = 119/234 (50.85%), Postives = 165/234 (70.51%), Query Frame = 1 Query: 358 GRKSR-EMAGERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYK 1056 G SR +++ VQ ++ A+R MPS EP+VPY + ++P+SQRL R+I++G F+D++ AN LIA LLY +KED KKISLY N PGAL++P+L+VYDTL + I+TLNLGLATGM +FLC AG +G R+ALPNARFL+Q+TG++DPYQGQA DIG++V + + N R+ ++TG+ I K+ +D +RDFYLS+ EA +YG+ID VLLP K D + Sbjct: 31 GLSSRFDVSASARVQTTALNARRMTPSMPSGEPLVPYSPSAVEGHQYLPISQRLLMDRVIVLGSFLDEEQANNLIATLLYLQKEDREKKISLYMNIPGALLKPSLAVYDTLKSLKCPITTLNLGLATGMGAFLCGAGTKGYRFALPNARFLLQKTGLDDPYQGQAVDIGLKVADNIADNYRVAAEFAKMTGNPIDKVAKDLERDFYLSAFEAREYGLIDRVLLPEQKYNSDTSR 264
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7R9YXR7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YXR7_9STRA) HSP 1 Score: 227 bits (579), Expect = 6.160e-68 Identity = 118/237 (49.79%), Postives = 161/237 (67.93%), Query Frame = 1 Query: 430 LRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTFGGEGQR 1134 + MP+ PMVPYK G + ++ + R+ + RI+ + +FID+ +N +I+ LLY KEDP + ++LYFN PGAL+RP L+VYD L + EIST+NLGL TGM + LC AG +G+R A+PNARFL+QR GME P+QGQASDIG+EV NV N R+E + R+TG T A++ +D +RDFYLSS EAV+YG+ID+VLLP ++R GG D D GTF GE ++ Sbjct: 78 ITMPTQTPMVPYKPPGQDYSQFIDLPSRMYRDRIMFISQFIDEDASNNIISTLLYLRKEDPNEPLNLYFNVPGALLRPGLAVYDLLCQLRQDCEISTVNLGLCTGMGALLCGAGTKGKRCAMPNARFLLQRVGMESPFQGQASDIGLEVSNVKVWNDRLEGEIARMTGQTAARVREDMRRDFYLSSEEAVRYGLIDKVLLP-------APQKRATAGG------DVDLGTFEGEDEQ 301 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.129.2 >prot_A-nodosum_M_contig10.129.2 ID=prot_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=313bp MITRRGWLILMLGVARAPYFSNAFISSHPPLSRPLGRKSREMAGERGVQAback to top mRNA from alignment at A-nodosum_M_contig10:1172948..1176024- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10.129.2 ID=mRNA_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3077bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1172948..1176024- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1172948..1176024- >mRNA_A-nodosum_M_contig10.129.2 ID=mRNA_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=939bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1172948..1176024- (Ascophyllum nodosum dioecious)back to top |