mRNA_A-nodosum_M_contig10.114.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.114.3
Unique NamemRNA_A-nodosum_M_contig10.114.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: D7FM51_ECTSI (FAM194 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM51_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 3.950e-117
Identity = 247/558 (44.27%), Postives = 322/558 (57.71%), Query Frame = 1 
Query: 1501 PRIRSTGLEVGPTHGLGTTIYEDHDRQDSSPGLRRSISWAGDATGKGCTENRESGDVFSPTARLKKGGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQRSGLTNADGRVTRFPATF---------SGSVASENSRST----EHDQIVKVDLGEHPRLADLYGVKSVPAFLMFRGGRLIWAGTLGGNPVKAAPPETAATRSRVLLVEPFARDQITTERVMRRFGCNWDLTLSASQAISRIQLARANAMASETDG---DDGEGYGVLVISDALGEAEVVALEKAFYSGSQRKK---EERLVVGLAALKGHVSEMSKSARQVVSIGFTESENGKQAVLSAHLALVADVAVTKPLRATALEAVF-QCLARGTTAASDTCMG------EGG-RVSISPSCGELGGGDRRYKGATPLRLLEKMEALKAQARKGVLTGSVLGGKERRLRP----EGALLGNSEILVTAQETEYRGYTLNSSTLRHL 3081
            PRIRSTGLEVGPTHGLG+ IY+D                                D F+  +RL+KGGKWLGEL+V  ++  ENP+LKR                                             L+ FLEEE  P+QLV VL VR  +P CNK++ +AELAN  L+Q    ++ +G                  S S A  +SR++    E  ++V+VD  EH   A+LYGV+++PAFLMF+GGRL W GTLGG+P+KAAPP  AA   RVLLVEP A+ QI+TER +RRFGC+WDL L+A QA+ RIQ+AR N+MAS++      +GEGYGVL+IS+ALG AEV+ALEKA + G         + +VVGLA ++G  S M  +A +VVS GFTE+ +GK+AVLS HLALVADVAV+ P+R +ALEAVF +C  R    AS   +G      +GG  +S+S SC  L GGD RYKG TP RLL+KME + AQ   G+   +      R+ RP      A  G   IL++AQET  +G+ L  STL+ +
Sbjct:  232 PRIRSTGLEVGPTHGLGSMIYDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGDDAFAAASRLRKGGKWLGELDVRLQVSAENPLLKR---------------------------------------------LRAFLEEEAAPDQLVTVLGVRGDDPACNKVQTIAELANCFLVQGLSSSSGEGXXXXXXXXXXXXMNNNSRSSSAAGPSSRASVSGAEKYRMVRVDFAEHRATAELYGVQALPAFLMFQGGRLAWVGTLGGSPLKAAPPAGAAGGRRVLLVEPCAKRQISTERALRRFGCSWDLVLNAPQALLRIQVARTNSMASDSGNAASPNGEGYGVLMISNALGAAEVIALEKALHGGGAGFSGGGADSVVVGLAHVQGDPSAMGSAALRVVSAGFTEAADGKRAVLSPHLALVADVAVSTPVRTSALEAVFDRCCNRPKEDASVAGVGGKRGDGKGGVSLSMSASCSALEGGDGRYKGVTPSRLLQKMEEVGAQLAMGIFASNQATKAGRQHRPGRGGAAASAGKGGILLSAQETSCKGFLLERSTLQRI 744
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: A0A5D6XIH5_9STRA (FAM194 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIH5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.720e-29
Identity = 110/328 (33.54%), Postives = 156/328 (47.56%), Query Frame = 1 
Query: 1666 DVFSPTARLKKG--GKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQRSGLTNADGRVTRFPATFSGSVASENSRSTEHDQIVKVDLGEHPRLADLYGVKSVPAFLM-------------------------FRGGRLIWAGTLGGNPVKAAPPETAATRS-------RVLLVEPFARDQITTERVMRRFGCNWDLTLSASQAISRI-----QLARANAMASETDGDDGEGYGVLVISDALGEAEVVALEK 2532
            D  +   RLK G  G+WLG +E+HR + +ENPVL+R   L  +SGRY++E+SVLG+ T           +G  LR +PA +L  FL E    +QLV V C+R  +  C      A L  QI LQ +  T   G     P T    +  +         IVK DL E   L + Y + +VP FL+                         F  GRL+ A +LGG P++  P    A  S       RVLLVE  A+ Q+  E+V+R+    WDL     QA++ +      LA   A +S T G     YGV+++SDAL + EV ++++
Sbjct:  363 DSTASLKRLKDGETGEWLGSVEIHRMIAMENPVLRRGGPLTSASGRYSRELSVLGRGTR---------PSGEHLRLLPAHKLSSFLREACASDQLVVVACLRVDD--CQSRAAEAVL-EQIQLQLTAATKGVGA----PQTAENDIRRKCC-------IVKCDLSESTLLTERYQIHAVPTFLVYACLLTDAGEESSAHSVTMRAPTPRFYDGRLVHATSLGGAPIRVVPATRNAHLSNQMDQLPRVLLVEKSAKQQVAIEKVLRKEAFQWDLASHGEQAVAYLTRFPRSLAGNRATSSSTSGSTD--YGVVLLSDALDDFEVRSIDR 665
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: K3XA95_GLOUD (FAM194 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA95_GLOUD)

HSP 1 Score: 137 bits (344), Expect = 3.130e-29
Identity = 112/369 (30.35%), Postives = 170/369 (46.07%), Query Frame = 1 
Query: 1501 PRIRSTGLEVGPTHGL-GTTIYEDHDRQDSSPGLRRSISWAGDATGKGCTENRESGDVFSPTARLKKGGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQRSGLTNADGRVTRFPATFSGSVASENSRSTEHDQIVKVDLGEHPRLADLYGVKSVPAFLMFRGGRLIWAGTLGGNPVKAAPPETAATRS-------RVLLVEPFARDQITTERVMRRFGCNWDLTLSASQAISRIQLARANAMASETDGDDG--EGYGVLVISDALGEAEVVALEKAFYSGSQRKKEERLV 2577
            P +  TG EVG    L G  + ++    D+S  L+R              +NRE+             GKWL  +E+H K+ +ENPVL+RS  L  +SGRY++E+SV G         G    TG  LR I A +L  FL+E+   EQLV + C+R  +     ++ M E   Q  ++ S ++ A                S+ S   +   +VK DLGE P LA+ Y + + P FLMF   RL+   ++GG  ++  P    A  S       R LLVE   + QI  E+V+++    WDL     QA+S       N   +   G      GYG++++SD L + EV ++++      + +  E LV
Sbjct:  269 PILPKTGFEVGHEPTLFGAPVKKN----DASESLKR-------------LQNRET-------------GKWLDSVEIHHKIALENPVLRRSGPLTSASGRYSRELSVQG---------GGVKPTGEHLRLISACKLDEFLKEKCVNEQLVVLACLRSDDCQSRVVEAMLEQVQQ-QIRDSAMSPA---------------LSQLSGIRQKCCLVKCDLGESPVLAERYRIHATPTFLMFYDQRLVHVTSMGGAAMRVFPATKNAHLSGQMDYLPRALLVEKNVKQQIAIEKVLKKEAFQWDLANHGEQAVSYFTRLPRNTNGTTATGKGAITAGYGIVLLSDTLDDFEVRSIDRCVRQKDKARPSESLV 582
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: W4G127_9STRA (FAM194 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G127_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.300e-26
Identity = 94/307 (30.62%), Postives = 156/307 (50.81%), Query Frame = 1 
Query: 1681 TARLKKGGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQRSGLTNADGR----VTRFPATFSGSVASENSRSTEHDQIVKVDLGEHPRLADLYGVKSVPAFLMFRGGRLIWAGTLGGNPVKAAPPETAATRS-------RVLLVEPFARDQITTERVMRRFGCNWDLTLSASQAISRI-QLARANAMASETDGDDG--EGYGVLVISDALGEAEVVALEKAFYSGSQRK 2559
            +A   K GKWL  L++  +L + NPVL R+ +L  +SGRY+ +I + G         G A   G  L  +   RL  FL+++   +QLV V C+R+ + T  + + + +L   IL    G  +        V  +  T S  + +   R      +VKVDL E   +A  + + + P FLMF  G+L+ A +LGG+ V+ AP       +       R LLV+  A+ Q+ +E+++R+    WDL L A QAI R+ +L++A+A+      ++G    Y +L+I D +GEA +  L++   +   +K
Sbjct:  318 SALQDKDGKWLSSLDIRTRLELSNPVLPRTAVLCNASGRYSVDIQIPG---------GSAQPEGTKLEVVAGCRLDGFLKDDCASDQLVVVACLREDDLTSRQAEKVLQLVATILADPQGDLSCHALPQNIVYIYMLTCSAGIVNAKYR------LVKVDLAESREIAKRFCLHATPTFLMFFEGKLLGATSLGGHAVRIAPTTRNVHLTNKMDHPPRTLLVQGSAKQQVVSEKILRKELFAWDLALDADQAIQRVSKLSKASAV------NNGVCPCYNLLLICDDVGEAGLRTLDRFIRTTDSKK 603
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: A0A024UBZ4_9STRA (FAM194 domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBZ4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.460e-23
Identity = 91/312 (29.17%), Postives = 148/312 (47.44%), Query Frame = 1 
Query: 1696 KGGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQRSGLTNADGRVTRFPATFSGSVASENSRSTEHDQIVKVDLGEHPRLADLYGVKSVPAFLMFRGGRLIWAGTLGGNPVKAAPPETAATRS-------RVLLVEPFARDQITTERVMRRFGCNWDLTLSASQAISRI-QLARANAMASETDGDDGEG----YGVLVISDALGEAEVVALEKAFYSGSQRKKE---ERLVVGL 2586
            K GKWL  L++  +L   +PVL R+ +L  +SGRY+ +I + G         G A   G  L  +   +L  FL+++   +QLV V C+R+ + +  K + + +L   IL         D      P      + +   R      +VKVDL E    A  + + + P FLMF  G+L+   +LGG+ V+ AP       +       R LLV+  A+ Q+ +E+ +R+    WDL L A +A  R+ +L +A           G G    Y +L++ D +GEA++ +LE+   S   +K     ++ VVGL
Sbjct:  320 KDGKWLSSLDIRTRLERASPVLPRTAVLCNASGRYSVDIQIPG---------GSAQPEGTKLEVVSGHQLDDFLKDDCATDQLVVVACLREDDLSSRKAEKVLQLVATILAH----PQEDLSPHALPQAIVAGIVNAKYR------LVKVDLAESREFAKRFSIHATPTFLMFFEGKLVGVTSLGGHAVRIAPTTRNVNLTSKMDHPPRTLLVQRGAKQQVLSEKTLRKELFAWDLALGAEEAFQRLSKLNKAT---------QGHGVPPCYNLLLLCDDIGEADLRSLERYIRSTDSKKAPNPTQQCVVGL 603
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: A0A024UC00_9STRA (FAM194 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UC00_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.060e-20
Identity = 73/247 (29.55%), Postives = 117/247 (47.37%), Query Frame = 1 
Query: 1696 KGGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQRSGLTNADGRVTRFPATFSGSVASENSRSTEHDQIVKVDLGEHPRLADLYGVKSVPAFLMFRGGRLIWAGTLGGNPVKAAPPETAATRS-------RVLLVEPFARDQITTERVMRRFGCNWDLTLSASQAISRI 2415
            K GKWL  L++  +L   +PVL R+ +L  +SGRY+ +I + G         G A   G  L  +   +L  FL+++   +QLV V C+R+ + +  K + + +L   IL         D      P      + +   R      +VKVDL E    A  + + + P FLMF  G+L+   +LGG+ V+ AP       +       R LLV+  A+ Q+ +E+ +R+    WDL L A +A  R+
Sbjct:  320 KDGKWLSSLDIRTRLERASPVLPRTAVLCNASGRYSVDIQIPG---------GSAQPEGTKLEVVSGHQLDDFLKDDCATDQLVVVACLREDDLSSRKAEKVLQLVATILAH----PQEDLSPHALPQAIVAGIVNAKYR------LVKVDLAESREFAKRFSIHATPTFLMFFEGKLVGVTSLGGHAVRIAPTTRNVNLTSKMDHPPRTLLVQRGAKQQVLSEKTLRKELFAWDLALGAEEAFQRL 547
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: A0A397F2F1_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F2F1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.850e-20
Identity = 74/245 (30.20%), Postives = 120/245 (48.98%), Query Frame = 1 
Query: 1681 TARLKKGGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQRSGLTNADGRVTRFPATFSGSVASENSRSTEHDQIVKVDLGEHPRLADLYGVKSVPAFLMFRGGRLIWAGTLGGNPVKAAPPETAATRS-------RVLLVEPFARDQITTERVMRRFGCNWDLTLSA 2394
            +A   K GKWL  L++  +L + NPVL R+ +L  +SGRY+ +I + G         G A   G  L  +   RL  FL+++   +QLV V C+R+ + T  + + + +L   IL    G  +            +  + +   R      +VKVDL E   +A  + + + P FLMF  G+L+ A +LGG+ V+ AP       +       R LLV+  A+ Q+ +E+++R+    WDL L A
Sbjct:  129 SALQDKDGKWLSSLDIRTRLELSNPVLPRTAVLCNASGRYSVDIQIPG---------GSAQPEGTKLEVVAGCRLDGFLKDDCASDQLVVVACLREDDVTSRQAEKVLQLVATILADPQGDLSC----------HAAGIVNAKYR------LVKVDLAESREIAKRFCLHATPTFLMFFEGKLLGATSLGGHAVRIAPTTRNVHLTNKMDHPPRTLLVQGSAKQQVVSEKILRKELFAWDLALDA 348
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: A0A7S1GB45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GB45_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 9.620e-12
Identity = 59/191 (30.89%), Postives = 90/191 (47.12%), Query Frame = 1 
Query: 1696 KGGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASR---LKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQRSGLTNADGRVTRFPATFSGSVASENSRSTEHD--QIVKVDLGEHPRLADLYGVKSVPAFLMFRGGR--LIWAGTL 2247
            KGG+WLGEL++ R++   NPVL+RS  L+ +SGRY  ++ V  K              G   R +P  R   L  +L E   P+QLV V C+R+ +P C + + + E  N  L              ++P   +   A E +        +IVK D+ E   +   + + ++P FL F GG   L +AG L
Sbjct:  409 KGGRWLGELDIKRRIAGANPVLERSTQLRGASGRYCVDVPVESK--------------GTVFRKLPVVRARDLDKYLSEIARPDQLVLVACLREDDPLCRRAQQLLEHVNGTL------------AAQYPEDPNTGKADEGAPPANPCPYRIVKCDMTESREMTRRFAIHALPMFLSFMGGPSGLCYAGPL 573
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: A0A7S3YD84_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD84_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 1.130e-8
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1 
Query: 2140 KVDLGEHPRLADLYGVKSVPAFLMFRGGRLIWAGTLGGNPVKAAPPETAATRSRVLLVEPFARDQITTERVMRRFGCNWDLTLSASQAIS 2409
            +V++ +       + VKSVPAFLMF  G+L++ G+LGG   KA P      R R LLVEP  R Q+  E++++     WDL L+ + A +
Sbjct:   10 QVEMAQDEAFGRQFKVKSVPAFLMFYNGQLVYKGSLGGLRAKALPAHHH--RPRTLLVEPCFRAQLQAEKLLKANKFAWDLALTGAAAAA 97
[Close]
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Match: A0A662YAF1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAF1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.140e-8
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 1 
Query: 1657 ESGDVFSPTARLKK--GGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSLTGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKVMAELANQILLQR 2034
            ++ D      RLK    GKWLG +E+H K+ +ENP L R+  L  +SGRY++E+ V           G     G  L  +P ++L  FL E+   ++LV V C+R  +      + M E    IL +R
Sbjct:  179 QANDASETLKRLKNEANGKWLGSVEIHEKIALENPGLPRTGRLTNASGRYSQELPVAD---------GGVKPVGERLLTVPGAKLDVFLREKCADDELVVVACLRADDRQSRTTEAMLEQVQLILSER 297
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.114.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FM51_ECTSI3.950e-11744.27FAM194 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5D6XIH5_9STRA1.720e-2933.54FAM194 domain-containing protein n=1 Tax=Pythium b... [more]
K3XA95_GLOUD3.130e-2930.35FAM194 domain-containing protein n=1 Tax=Globispor... [more]
W4G127_9STRA3.300e-2630.62FAM194 domain-containing protein n=4 Tax=Aphanomyc... [more]
A0A024UBZ4_9STRA3.460e-2329.17FAM194 domain-containing protein n=3 Tax=Aphanomyc... [more]
A0A024UC00_9STRA3.060e-2029.55FAM194 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A397F2F1_9STRA4.850e-2030.20Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A7S1GB45_9STRA9.620e-1230.89Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3YD84_HETAK1.130e-838.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A662YAF1_9STRA1.140e-832.81Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:1075678..1081822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM51
PFAMsFAM194
Model size3372
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue3.93e-124
EggNOG OGs29SX0@1|root,2RXEY@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_010660.1
DescriptionFAM194 protein
Cds size1695
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.114.3prot_A-nodosum_M_contig10.114.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 1075957..1080220 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866352.4897463-UTR-A-nodosum_M_contig10:1075677..10759561680866352.4897463-UTR-A-nodosum_M_contig10:1075677..1075956Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 1075678..1075956 -
1680866352.616206-UTR-A-nodosum_M_contig10:1080220..10807051680866352.616206-UTR-A-nodosum_M_contig10:1080220..1080705Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 1080221..1080705 -
1680866352.6292083-UTR-A-nodosum_M_contig10:1080909..10818221680866352.6292083-UTR-A-nodosum_M_contig10:1080909..1081822Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 1080910..1081822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866352.5035346-CDS-A-nodosum_M_contig10:1075956..10761821680866352.5035346-CDS-A-nodosum_M_contig10:1075956..1076182Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1075957..1076182 -
1680866352.5124176-CDS-A-nodosum_M_contig10:1076541..10768761680866352.5124176-CDS-A-nodosum_M_contig10:1076541..1076876Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1076542..1076876 -
1680866352.522167-CDS-A-nodosum_M_contig10:1077486..10776001680866352.522167-CDS-A-nodosum_M_contig10:1077486..1077600Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1077487..1077600 -
1680866352.5325174-CDS-A-nodosum_M_contig10:1077856..10779461680866352.5325174-CDS-A-nodosum_M_contig10:1077856..1077946Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1077857..1077946 -
1680866352.5441287-CDS-A-nodosum_M_contig10:1078451..10788781680866352.5441287-CDS-A-nodosum_M_contig10:1078451..1078878Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1078452..1078878 -
1680866352.5976558-CDS-A-nodosum_M_contig10:1079345..10794801680866352.5976558-CDS-A-nodosum_M_contig10:1079345..1079480Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1079346..1079480 -
1680866352.6077464-CDS-A-nodosum_M_contig10:1079852..10802201680866352.6077464-CDS-A-nodosum_M_contig10:1079852..1080220Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1079853..1080220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.114.3

>prot_A-nodosum_M_contig10.114.3 ID=prot_A-nodosum_M_contig10.114.3|Name=mRNA_A-nodosum_M_contig10.114.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=565bp
MSLRMTRGQRSGTGEAFLGSIVERMCSRRYSQRAPRIRSTGLEVGPTHGL
GTTIYEDHDRQDSSPGLRRSISWAGDATGKGCTENRESGDVFSPTARLKK
GGKWLGELEVHRKLFVENPVLKRSKMLQMSSGRYTKEISVLGKTTSVKSL
TGKAVATGVPLRNIPASRLKPFLEEETGPEQLVAVLCVRQSNPTCNKMKV
MAELANQILLQRSGLTNADGRVTRFPATFSGSVASENSRSTEHDQIVKVD
LGEHPRLADLYGVKSVPAFLMFRGGRLIWAGTLGGNPVKAAPPETAATRS
RVLLVEPFARDQITTERVMRRFGCNWDLTLSASQAISRIQLARANAMASE
TDGDDGEGYGVLVISDALGEAEVVALEKAFYSGSQRKKEERLVVGLAALK
GHVSEMSKSARQVVSIGFTESENGKQAVLSAHLALVADVAVTKPLRATAL
EAVFQCLARGTTAASDTCMGEGGRVSISPSCGELGGGDRRYKGATPLRLL
EKMEALKAQARKGVLTGSVLGGKERRLRPEGALLGNSEILVTAQETEYRG
YTLNSSTLRHLIGQ*
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mRNA from alignment at A-nodosum_M_contig10:1075678..1081822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.114.3 ID=mRNA_A-nodosum_M_contig10.114.3|Name=mRNA_A-nodosum_M_contig10.114.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6145bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1075678..1081822- (Ascophyllum nodosum dioecious)
CGAAGTATATCTGAACGCATCCAAACTTTACGAGCATCCACACCGTCCGG
GGGGGATTGTGTCGAAAGATTTGGTTGGGGACATCGGCTGTTGTAACAAA
TATGAATGGGGTTTAGTCGGGTTTCCCAATTATAGTGTTCCATAGGGTCA
ACAGTATAATGTACGTATAGACAAAACCGTCCGTTGTGTACCTGGTACGA
AGTATTATACCTGTAGGAGGTGCTGTAAATCCGGTGTTTGATTCTCATCC
ATCATCAGCGAGCTAGACCATTTCTTCCAATTCTCGACGCCAATCTCCAC
GGTTTCGTGAGATATGTCACCACCACACGAGAGAGATGATGATAATGTTG
GCTTGTATCCGTCTGGTGTTCGGGTGTCAGTCCTTATGGCTGACGAGTCG
GGCTCTATCTATTATCCCTCGGGAAAAGTTGCAATAAACAAGGGAATGAT
CGACGGACGCTTTCAATTATATATCTACGGTAACGATGCAAGGTCTACAC
CGCTTGGCGCGTTGAACGAGCATGCGGTTGGGTTTTTCTTGGGATCTCGT
GGGATGCGTCTTGTTCTCAATAAGGTACGCCCCATTTGAATACACGGTAG
CGTGCTTGATTCGACCCAGATTGTCGCAACTTTCGGCAAACGTACCAAAC
GTCCACTATTGGAGCGGCCGATTCCGTCAGGTGGGAGGACTCTTGACAGA
TGAACACGGCAAAATCGTTAGAGAGTGGCGATACGACCCCAGAGCACGCA
TGCCACCCCCTGCCGAAGACCTCGAGCTCAGGCTTAATGGGAGTATTACA
TTATCATTCCGGGACCGAAGTCATATGCGGATCAAGTTCCTCCACGGAGG
TGTTAGTCGTGAGCTGGATGTTGGGGTGCGGCCTAAGCGACACGGATCTT
ACCTTGATCATAGGTGCCAAGATACATGGATAGATGTTTCTCTGAAACAC
TGGCAAGAGTTAGAAGAGTATTCATAATGTATTTTATGAGTACTTTAGGA
GCATGAAGACTGTCATGATAGTCCGCTCAGGGTATGACTCGCTGGCCGTC
CCGCATAATGAACATCGTTAAATCTGTATGCATTCCTCGCAACGCTCCAA
CTACCGTGTTTCCACAGCATCCGCTTGCCAGGGGGAAAGCTTGAGCCTCA
GCTCAACCGTGAATCGCTCATTTCTCGGCAGCAGTCATTTGGCGACATCA
TAAAGGCGAAGCGAGACCGTCTAAAACCACGGAGTCAAAACCTAGCTGGA
GTCTGCAAGGACCTTGTTTCCGACCTTGAGAACGGCTTTGACAGTTTGAC
CCCGAAGGCAAGCCTTTTGCAGCGTATATGTTCATACTATTACGCTCGCA
ACTGAGTAACGCATATTTTCATTCTTCAAGAACCGTCAAGAAAACGCCCC
CAGTCCGCCAGGGGACGTAGAATCTCTCTGCAACGATGTTATACATACCA
CTACGCGTACATTCATGCAGGAGGTCATCGAGGCAGTCATATCGTACATG
CAACTGAGGATCTATTAGGATTGTAAGACTGAAAAAAGCTCTCCCAAAAT
GCAAAGATGAGAAAGTGTTTTCTCGCTGCACGGCCATGCTCTTCAAACTG
CAATGTCCCTGAGAATGACGCGAGGACAACGCTCGGGAACAGGTGAAGCC
TTTCTCGGATCCATCGTGGAAAGAATGTGCTCACGGCGCTACTCGCAAAG
AGCTCCTCGCATTCGAAGCACCGGGCTAGAGGTGGGACCAACCCACGGTT
TAGGTACCACGATTTACGAAGACCACGACCGCCAAGACAGCTCGCCGGGC
TTGCGCCGATCGATTTCGTGGGCAGGAGATGCAACGGGCAAAGGTTGTAC
GGAAAATAGGGAGAGTGGGGACGTCTTCTCTCCTACGGCAAGGCTCAAAA
AAGGTGGAAAGTGGCTGGGAGAGCTTGAAGTGCATCGCAAGCTTTTCGTG
GAGAATCCGGTCCTAAAGAGGTAGGTCATCGAAGGATCAGAACGCGACGA
TGGGCTAGCAAGATATTACATGCGGTGTGAGCTCGAGGTTTCTTGCCCTC
AGAACGCGTATGTTTTGCTGAGCAGTCCCGTTGCGGGAATCTCACCAAGT
TATTGTGTATCCCGGAAGAATGGTGAACCCAGCTGGTCGGTGAAACGATG
AGTAGTCGGGTACCCAAGACGATCTGAGGTTATCTTCCTATTGTCAGCAC
ACGTACTTTTAAGTTGCCCATCGGCTTTAAGCACACGACAGTGGTATGGT
TGATCCTCCACTCAGCGGTGGTAACGCATGCGGCCACCGCGGCGCCAAAA
TTCCTTGGTGCCTTCGCGTCAAACCTGGTCCTGGAACGTCAGATCGAAAA
TGCTGCAAATGTCGAGTGGTCGGTACACGAAGGAGATCTCGGTTCTAGGA
AAGACGACTTCGGTTAAGAGCCTAACCGGCAAGGCTGTGGCCACTGGGGT
ACCCCTTCGTAATATACCGGCATCAAGGTGACCATCCGATCCTGAAGCGG
AACACATGCTTATGAATGTTCACTGATATCTCCGGGTGCAAAGCTTGACG
ACTAGAAGAACCACCCCGATCGGTTTGTCTGCAACATCGAATTGCCAACT
TTATAAGCTATAAAGCGGGGCAAAACACTTCGAGCATTCTTGCTACTACC
ATGGAGCCGTTTTCGCTACAGTAATTTTGCTTGTCATCATGTGGTCGAAT
AACCAATCGCAAACACCGGGGTTGGGGCATTTATTGAAGGTGGATGGTTT
CATTCCGACTCGGGCGTTGTAGATCCTTGCAGTAGGGCCCTCGCAACACG
ACCCTAGCAGTACGACATATGATGCTCGTTCGTGTCGCACTTTTGAAAAT
ACGCAAGAGATCGTACCTCCCGCGTCTGCGCAAAACCTCAGCTTTGGGGT
CAGTCCTTTCCCATTCCCTCTGACTATCGACACACACGCCTAAGATTGAA
ACCCTTTTTGGAGGAAGAGACGGGACCCGAACAACTGGTCGCCGTCCTTT
GTGTTCGCCAAAGCAATCCGACGTGTAACAAGATGAAAGTAATGGCCGAG
CTGGCGAATCAGATTCTTCTCCAACGTTCCGGCTTGACTAATGCCGACGG
AAGAGTCACCCGTTTCCCTGCAACTTTCTCGGGGAGCGTTGCTTCCGAGA
ATTCGCGCTCAACAGAGCACGACCAGATTGTGAAGGTCGATCTTGGAGAG
CACCCAAGATTGGCGGATCTGTACGGGGTCAAGTCCGTGCCCGCGTTCTT
AATGTTTCGAGGAGGAAGACTTATCTGGGCCGGGACGCTTGGTGGTAACC
CCGTCAAAGCGGCCCCTCCGGAGACCGCGGCGACTCGGTCTAGGGTCCTG
TTGGTGGAACCGTTTGCAAGAGTGAGTGTTTTAGGGCAGGATTCCAATAA
AGGAAGAGGCACGGAGTCATTCCGTCGCAACAAAGTTTTTGATGGTCTTA
CGTGCCTGTGACGGGCGTAACCGGGAGGAGAGACGAAACAGGGCGCTCGC
GTGGGTGTAGATCTTCGAGACGCAAAAGTAGGGGCGTCGATGAGTTAGGT
ATGATTTGGTGGGATGGGGTACGATGTTGAAGATGATAAAAAAAGCGCAC
GAGCGTTTCTAACTTCATTTTGTGAAATAGACTCCAGCAAAGGCTGTAAG
GCGTCGCCTCAGACGTTTCTTCGCCGGCACCAATTGGGCAAACGTCTCAA
GACCACAAAAACGATCTTGTTGCAAGTTTCAATTCGACACGAAACATATT
GTCCTTACCAGTGCGCCAAATTTGACTTTGTGGCTAACGAGACAATCTCG
TGCTTGGAGGTCAGCGTTTTACTTCTAACCTTTAGCGAGTCTTGACCTAT
TTGATGCTTTGCCGATGCACCTGTAGGACCAAATCACCACAGAGCGGGTG
ATGCGGAGATTCGGGTGCAACTGGGACTTGACCCTAAGTGCCTCGCAGGC
AATTTCGAGGATACAGGTGCTTTGTGTTGAACAGCGGCCGAATATAGTAC
TTGACGAGAGGTTAGTACTTTCAGACTGAACATTGTGCACACCGAGCGAT
AAGTTTTATTCGGGAGAACACCAGCCAACAAAAGTACGTGATATTTTATC
TTACAAAAAAAATACGCGTCGTAGTTGTGGTCGTCGGCCCTGAGTGAGCA
TTCGACGGTTGTTTGGCGTCTCCTAACAACTTTATCCAGCTAACCTCGAC
CTTGCCTGCGATACACGGACAGTTGGCGCGGGCAAATGCGATGGCGTCAG
AAACTGATGGGGACGATGGCGAGGGTTACGGCGTGCTCGTGATAAGTGAC
GCTCTCGGGGAAGCCGAAGTAGTTGCCCTAGAAAAGGTACGGTCTCAAAA
CTGCCTTATTACACTTCCCGGTTTTGCCTCCATTCGCAGTGTTTTTTTCG
TAGGCAAAACACATTGATTGCTCTAAGGAACGAGCAGCCGAGTCGTTTAA
CGAATGGGGGGGAGGTTTGACGATTTCGCCCCCGGAGATGTCACCAGAAT
AGCCCCTTCCGGGGAAAGGACTACTTGATCCCCTACATGACTGGGAAGCT
TGCCCCGAATTCAACTCATTTCACCAGGGGGTTTGTCAAATATATCCCCG
GGACTTTTTTTTTTCGTGCCTTCCCCTCCCAAAACGGGGACAAGTTCTTG
ACATCCCCTACCCCCATACGTTGAACGACTCAGCCATTCGAGGCTCCATC
GAGACTGAAACGGAAACTAAGGAGGACCTTAGCCTTCAGAATTAATTTTC
TTCCTCCACCTATTCCTACCATTGAAGCAACCTTCGCAAGGAAGACCTGT
AAAAAGGTCCTTGATGGTTGATGGGTGCATAATGAAGTTTTCTGTGCGAC
ATCGCTAGCGCATCATCGTAAATTTCTCGTCCAGGCAGGACGCGACTCTC
TCCATACGCACCAGCGCGCCTTACGTTTTCTTTCGACGAATGCCAGGCCT
TCTACAGTGGAAGTCAACGCAAAAAGGAAGAGCGCCTTGTGGTTGGCCTC
GCGGCCTTGAAAGGCCATGTCTCCGAAATGTCCAAATCCGCGCGCCAGGT
GGTGTCTATTGGTTTCACGGAATCTGAGAATGGCAAGCAAGCAGTGTTAT
CGGCACATCTTGCCCTCGTCGCCGACGTCGCGGTGACGAAACCCCTCCGG
GCTACGGCGCTAGAAGCCGTGTTTCAGTGCCTAGCGAGGGGGACTACCGC
CGCAAGCGATACGTGCATGGGCGAAGGAGGCCGTGTGTCAATCTCGCCTA
GCTGTGGAGAGTTAGGAGGAGGAGATCGAAGGTTTGATGGTCTTCGCTTA
CTAAATATAAATGATAAATAAGGAGACGCAGGTGGGCTGGGATGTTCAGT
AGACTTGTGTCTGGGACTCTGAAATCAGCCTGCGAGTCGTCGACGAAATC
TTCATCTCGACTCTCACGAAATATCGTGCTTGATGCCTTGCATGTGCTGC
AAGTCTTTCCATGCAACGTGATTGCCCCACATTGTATTTTTGCGAGCAGA
GTATGTTATTGAATCTTGCCCTTTCAGCCCCGACCCCAAACAATAACCAA
CAATGTACGGGGGCCTTTGGTACATAACTGAAACTCGAAGCATCCGCCGG
AAGCGTTCCCGTACGCTGTCGTTTGGGAATAACCTTCCAGGTACAAGGGT
GCGACGCCTTTGCGGCTATTGGAAAAGATGGAAGCTCTCAAGGCCCAAGC
GAGAAAGGGTGTGTTAACAGGGAGTGTGTTGGGTGGCAAAGAAAGAAGAC
TACGGCCTGAGGGAGCGTTGTTGGGGAATTCGGAGATCCTCGTGACTGCC
CAAGAAACGGAGTACCGAGGGTACACGTTGAATTCGTCGACTCTTCGCCA
CTTGATTGGACAGTAACTTTCAGTGATTTGATTGGTCTGGTAAAAAATGT
TTTTTGTCTTTGAGTCAGACGCCGGTGTTTGGCATGGATATTGCAACTCT
GTCCCTGAGTTAAGGGAGGGATACATTTTTAATATCGTTCTCCCATAATA
TCAAATAACAATTCCTTCGATATGAAACGTGGCCAGGTAAACGTAAATTT
TCGAACCTTACAGAGAACGAGGTAGTACTCGAATTGGGTCATCGTATAGA
GAGTGGAAGGAAAGCTGCCTTTATGCATGGATGAACCAATTCCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1075678..1081822-

>mRNA_A-nodosum_M_contig10.114.3 ID=mRNA_A-nodosum_M_contig10.114.3|Name=mRNA_A-nodosum_M_contig10.114.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=1695bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1075678..1081822- (Ascophyllum nodosum dioecious)
ATGTCCCTGAGAATGACGCGAGGACAACGCTCGGGAACAGGTGAAGCCTT
TCTCGGATCCATCGTGGAAAGAATGTGCTCACGGCGCTACTCGCAAAGAG
CTCCTCGCATTCGAAGCACCGGGCTAGAGGTGGGACCAACCCACGGTTTA
GGTACCACGATTTACGAAGACCACGACCGCCAAGACAGCTCGCCGGGCTT
GCGCCGATCGATTTCGTGGGCAGGAGATGCAACGGGCAAAGGTTGTACGG
AAAATAGGGAGAGTGGGGACGTCTTCTCTCCTACGGCAAGGCTCAAAAAA
GGTGGAAAGTGGCTGGGAGAGCTTGAAGTGCATCGCAAGCTTTTCGTGGA
GAATCCGGTCCTAAAGAGATCGAAAATGCTGCAAATGTCGAGTGGTCGGT
ACACGAAGGAGATCTCGGTTCTAGGAAAGACGACTTCGGTTAAGAGCCTA
ACCGGCAAGGCTGTGGCCACTGGGGTACCCCTTCGTAATATACCGGCATC
AAGATTGAAACCCTTTTTGGAGGAAGAGACGGGACCCGAACAACTGGTCG
CCGTCCTTTGTGTTCGCCAAAGCAATCCGACGTGTAACAAGATGAAAGTA
ATGGCCGAGCTGGCGAATCAGATTCTTCTCCAACGTTCCGGCTTGACTAA
TGCCGACGGAAGAGTCACCCGTTTCCCTGCAACTTTCTCGGGGAGCGTTG
CTTCCGAGAATTCGCGCTCAACAGAGCACGACCAGATTGTGAAGGTCGAT
CTTGGAGAGCACCCAAGATTGGCGGATCTGTACGGGGTCAAGTCCGTGCC
CGCGTTCTTAATGTTTCGAGGAGGAAGACTTATCTGGGCCGGGACGCTTG
GTGGTAACCCCGTCAAAGCGGCCCCTCCGGAGACCGCGGCGACTCGGTCT
AGGGTCCTGTTGGTGGAACCGTTTGCAAGAGACCAAATCACCACAGAGCG
GGTGATGCGGAGATTCGGGTGCAACTGGGACTTGACCCTAAGTGCCTCGC
AGGCAATTTCGAGGATACAGTTGGCGCGGGCAAATGCGATGGCGTCAGAA
ACTGATGGGGACGATGGCGAGGGTTACGGCGTGCTCGTGATAAGTGACGC
TCTCGGGGAAGCCGAAGTAGTTGCCCTAGAAAAGGCCTTCTACAGTGGAA
GTCAACGCAAAAAGGAAGAGCGCCTTGTGGTTGGCCTCGCGGCCTTGAAA
GGCCATGTCTCCGAAATGTCCAAATCCGCGCGCCAGGTGGTGTCTATTGG
TTTCACGGAATCTGAGAATGGCAAGCAAGCAGTGTTATCGGCACATCTTG
CCCTCGTCGCCGACGTCGCGGTGACGAAACCCCTCCGGGCTACGGCGCTA
GAAGCCGTGTTTCAGTGCCTAGCGAGGGGGACTACCGCCGCAAGCGATAC
GTGCATGGGCGAAGGAGGCCGTGTGTCAATCTCGCCTAGCTGTGGAGAGT
TAGGAGGAGGAGATCGAAGGTACAAGGGTGCGACGCCTTTGCGGCTATTG
GAAAAGATGGAAGCTCTCAAGGCCCAAGCGAGAAAGGGTGTGTTAACAGG
GAGTGTGTTGGGTGGCAAAGAAAGAAGACTACGGCCTGAGGGAGCGTTGT
TGGGGAATTCGGAGATCCTCGTGACTGCCCAAGAAACGGAGTACCGAGGG
TACACGTTGAATTCGTCGACTCTTCGCCACTTGATTGGACAGTAA
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