mRNA_A-nodosum_M_contig1.164.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: A0A6H5KLE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE3_9PHAE) HSP 1 Score: 220 bits (561), Expect = 1.770e-63 Identity = 102/192 (53.12%), Postives = 141/192 (73.44%), Query Frame = 1
Query: 244 PHLPTT-GRRTQEAKTVWNGRWLNLMCKHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDGSWLTNEKATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
PHL G ++ + +W+ RWLNLMC HSPF MDGVG+VAQC+W+GA+QVT+DHK+G H ++ LDP SW YFG W+G YV+TVL FGWCS+P+IY +LSEAV +YLR + I L W+D +LTN ++T+ S ++Q +AA +A +AL VFY+ GYF+S + L+ +T V+LG+ICD++ RFEVP
Sbjct: 111 PHLVLPLGVEPKKPRLIWDARWLNLMCLHSPFSMDGVGKVAQCAWQGAHQVTIDHKAGYH--HVALDPDSWQYFGFEWEGEMYVFTVLAFGWCSAPFIYSSLSEAVARYLRARDIPVLTWIDDFYLTNFRSTRMLSSKEQFQAALTAAYVALEVFYRAGYFLSIKKSELSPTTCLVFLGIICDAERGRFEVP 300
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: UPI001CF174B4 (uncharacterized protein LOC114948837 n=4 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF174B4) HSP 1 Score: 95.9 bits (237), Expect = 1.160e-18 Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 1
Query: 238 STPHL--PTTGRRTQEAKTVWNGRWLNLMCKHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDGSWLTNE-KATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
++PHL P T ++ + + R+LNL K PF++D + ++ + G +Q + D K+G ++ L PSS T+FGL W GVY+V+ L FGW +S YIYH L AVT R G+ ++D + +A +L A +A + + + GYF++ ++ S +LG +CDS + F +P
Sbjct: 120 TSPHLVLPLTVEPSKP-RLCHDERFLNLWIKDLPFKLDHLTDLPRYVLPGHFQTSFDDKNGYQ--HVLLHPSSRTFFGLQWNGVYFVFCTLPFGWKASAYIYHNLGLAVTSAARSFGVPVSQYIDDRHVGQLCRAPASSTLSPNRVLAVAAAYILCYLLAEAGYFVAIAKSQCVPSIVIRFLGFLCDSGRQAFLLP 312
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: UPI000A2A732A (uncharacterized protein LOC110252942 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A732A) HSP 1 Score: 91.7 bits (226), Expect = 2.640e-17 Identity = 53/176 (30.11%), Postives = 92/176 (52.27%), Query Frame = 1
Query: 322 KHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLD-----------GSWLTNEKATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
+ +PF++D + V Q + G++ +D KSG +I L S YFG+ WKG ++V T L FGW +SP++Y ++ +VT +LR +GI+ ++D G W + + ++ A AA TC ++ GYF +C+L + +LG+I D++ + F +P
Sbjct: 2 RETPFKLDTLVSVPQLVYRGSHLSKIDDKSGY--DHIFLSEDSQQYFGIEWKGWWFVCTTLPFGWKNSPFVYQSIGRSVTTFLRERGITCSLYIDDRLVGEIFSGEGHWSRSIELRDKKFSREAAGAALYVTC---SLLXSLGYFXGLKKCTLRPTVNIRFLGMIXDTEAQAFLIP 172
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: UPI001CF3ACA9 (uncharacterized protein LOC122957467 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3ACA9) HSP 1 Score: 91.3 bits (225), Expect = 3.890e-17 Identity = 57/175 (32.57%), Postives = 89/175 (50.86%), Query Frame = 1
Query: 301 RWLNLMCKHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDG---SWLTNEKATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
R+LNL + PF +D + ++ + +G +Q T D KSG ++ L S TYFGL W+G Y+V+ L FGW +S Y+YH++ T ++R G+ ++D L + S D RA +A +A V GYFI + +L + ++LG I DS F +P
Sbjct: 17 RFLNLWIRGLPFSLDLITDLPRYVRKGNFQTTCDDKSGY--DHVLLSTESRTYFGLEWRGWYFVFNTLPFGWKASAYLYHSIGLVATSHIRSHGVPCSQYIDDRHFGQLQIRRDAPPCSWSDFQRA-QAALYIACYVLIDLGYFIGLQKSTLVPTQAPIFLGYIIDSVKSAFLMP 188
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: UPI00077AD091 (uncharacterized protein LOC107355532 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AD091) HSP 1 Score: 86.7 bits (213), Expect = 1.360e-15 Identity = 58/211 (27.49%), Postives = 98/211 (46.45%), Query Frame = 1
Query: 190 WLHHAMVYIGRSHLFPSTPHL--PTTGRRTQEAKTVWNGRWLNLMCKHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDGSWLTNEKATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
W+ ++ + S PHL P T T+ + + R+LNL + PF++D + ++ G +Q T D K+G ++ + P S +F W+G Y+ + L FGW S ++YH VT R G+ ++D + ++ Q + A +A + L++ GYFI+ + S ST +LG I DS + F VP
Sbjct: 138 WISQGVIKVHGVVAACSPPHLVLPLTVEPTKP-RLCHDERFLNLWTRDLPFKLDNLPDLPLHVLPGHFQTTFDDKNGYQ--HLKIHPDSQEFFSFSWRGYYFPFCTLPFGWKVSAFLYHNFGLVVTSAARSLGVPVSQYIDDRHVGQLFSSGLTVYQPCRKLALAAAFILLSLLVSAGYFINLVKSSPVPSTSVRFLGFISDSILQAFLVP 345 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1.164.1 >prot_A-nodosum_M_contig1.164.1 ID=prot_A-nodosum_M_contig1.164.1|Name=mRNA_A-nodosum_M_contig1.164.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=204bp MVYIGRSHLFPSTPHLPTTGRRTQEAKTVWNGRWLNLMCKHSPFQMDGVGback to top mRNA from alignment at A-nodosum_M_contig1:2086548..2087363+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1.164.1 ID=mRNA_A-nodosum_M_contig1.164.1|Name=mRNA_A-nodosum_M_contig1.164.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2086548..2087363+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1:2086548..2087363+ >mRNA_A-nodosum_M_contig1.164.1 ID=mRNA_A-nodosum_M_contig1.164.1|Name=mRNA_A-nodosum_M_contig1.164.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2086548..2087363+ (Ascophyllum nodosum dioecious)back to top |