mRNA_A-nodosum_M_contig1.164.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1.164.1
Unique NamemRNA_A-nodosum_M_contig1.164.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: A0A6H5KLE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE3_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.770e-63
Identity = 102/192 (53.12%), Postives = 141/192 (73.44%), Query Frame = 1
Query:  244 PHLPTT-GRRTQEAKTVWNGRWLNLMCKHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDGSWLTNEKATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
            PHL    G   ++ + +W+ RWLNLMC HSPF MDGVG+VAQC+W+GA+QVT+DHK+G H  ++ LDP SW YFG  W+G  YV+TVL FGWCS+P+IY +LSEAV +YLR + I  L W+D  +LTN ++T+  S ++Q +AA +A  +AL VFY+ GYF+S  +  L+ +T  V+LG+ICD++  RFEVP
Sbjct:  111 PHLVLPLGVEPKKPRLIWDARWLNLMCLHSPFSMDGVGKVAQCAWQGAHQVTIDHKAGYH--HVALDPDSWQYFGFEWEGEMYVFTVLAFGWCSAPFIYSSLSEAVARYLRARDIPVLTWIDDFYLTNFRSTRMLSSKEQFQAALTAAYVALEVFYRAGYFLSIKKSELSPTTCLVFLGIICDAERGRFEVP 300          
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: UPI001CF174B4 (uncharacterized protein LOC114948837 n=4 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF174B4)

HSP 1 Score: 95.9 bits (237), Expect = 1.160e-18
Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 1
Query:  238 STPHL--PTTGRRTQEAKTVWNGRWLNLMCKHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDGSWLTNE-KATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
            ++PHL  P T   ++  +   + R+LNL  K  PF++D + ++ +    G +Q + D K+G    ++ L PSS T+FGL W GVY+V+  L FGW +S YIYH L  AVT   R  G+    ++D   +    +A    +L      A +A  +   +  + GYF++ ++     S    +LG +CDS  + F +P
Sbjct:  120 TSPHLVLPLTVEPSKP-RLCHDERFLNLWIKDLPFKLDHLTDLPRYVLPGHFQTSFDDKNGYQ--HVLLHPSSRTFFGLQWNGVYFVFCTLPFGWKASAYIYHNLGLAVTSAARSFGVPVSQYIDDRHVGQLCRAPASSTLSPNRVLAVAAAYILCYLLAEAGYFVAIAKSQCVPSIVIRFLGFLCDSGRQAFLLP 312          
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: UPI000A2A732A (uncharacterized protein LOC110252942 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A732A)

HSP 1 Score: 91.7 bits (226), Expect = 2.640e-17
Identity = 53/176 (30.11%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  322 KHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLD-----------GSWLTNEKATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
            + +PF++D +  V Q  + G++   +D KSG    +I L   S  YFG+ WKG ++V T L FGW +SP++Y ++  +VT +LR +GI+   ++D           G W  + +       ++ A AA   TC   ++    GYF    +C+L  +    +LG+I D++ + F +P
Sbjct:    2 RETPFKLDTLVSVPQLVYRGSHLSKIDDKSGY--DHIFLSEDSQQYFGIEWKGWWFVCTTLPFGWKNSPFVYQSIGRSVTTFLRERGITCSLYIDDRLVGEIFSGEGHWSRSIELRDKKFSREAAGAALYVTC---SLLXSLGYFXGLKKCTLRPTVNIRFLGMIXDTEAQAFLIP 172          
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: UPI001CF3ACA9 (uncharacterized protein LOC122957467 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3ACA9)

HSP 1 Score: 91.3 bits (225), Expect = 3.890e-17
Identity = 57/175 (32.57%), Postives = 89/175 (50.86%), Query Frame = 1
Query:  301 RWLNLMCKHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDG---SWLTNEKATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
            R+LNL  +  PF +D + ++ +   +G +Q T D KSG    ++ L   S TYFGL W+G Y+V+  L FGW +S Y+YH++    T ++R  G+    ++D      L   +     S  D  RA  +A  +A  V    GYFI   + +L  +   ++LG I DS    F +P
Sbjct:   17 RFLNLWIRGLPFSLDLITDLPRYVRKGNFQTTCDDKSGY--DHVLLSTESRTYFGLEWRGWYFVFNTLPFGWKASAYLYHSIGLVATSHIRSHGVPCSQYIDDRHFGQLQIRRDAPPCSWSDFQRA-QAALYIACYVLIDLGYFIGLQKSTLVPTQAPIFLGYIIDSVKSAFLMP 188          
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Match: UPI00077AD091 (uncharacterized protein LOC107355532 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AD091)

HSP 1 Score: 86.7 bits (213), Expect = 1.360e-15
Identity = 58/211 (27.49%), Postives = 98/211 (46.45%), Query Frame = 1
Query:  190 WLHHAMVYIGRSHLFPSTPHL--PTTGRRTQEAKTVWNGRWLNLMCKHSPFQMDGVGEVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVLCFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDGSWLTNEKATQHGSLQDQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRRFEVP 816
            W+   ++ +       S PHL  P T   T+  +   + R+LNL  +  PF++D + ++      G +Q T D K+G    ++ + P S  +F   W+G Y+ +  L FGW  S ++YH     VT   R  G+    ++D   +    ++     Q   + A +A  + L++    GYFI+  + S   ST   +LG I DS  + F VP
Sbjct:  138 WISQGVIKVHGVVAACSPPHLVLPLTVEPTKP-RLCHDERFLNLWTRDLPFKLDNLPDLPLHVLPGHFQTTFDDKNGYQ--HLKIHPDSQEFFSFSWRGYYFPFCTLPFGWKVSAFLYHNFGLVVTSAARSLGVPVSQYIDDRHVGQLFSSGLTVYQPCRKLALAAAFILLSLLVSAGYFINLVKSSPVPSTSVRFLGFISDSILQAFLVP 345          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KLE3_9PHAE1.770e-6353.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001CF174B41.160e-1831.63uncharacterized protein LOC114948837 n=4 Tax=Acrop... [more]
UPI000A2A732A2.640e-1730.11uncharacterized protein LOC110252942 n=1 Tax=Exaip... [more]
UPI001CF3ACA93.890e-1732.57uncharacterized protein LOC122957467 n=1 Tax=Acrop... [more]
UPI00077AD0911.360e-1527.49uncharacterized protein LOC107355532 n=1 Tax=Acrop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:2086548..2087363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15717048
PFAMsRVT_1
Model size817
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.14e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3A8SV@33154|Opisthokonta,3BVCW@33208|Metazoa
Descriptiontransposition, RNA-mediated
Cds size612
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866345.9933667-UTR-A-nodosum_M_contig1:2086547..20867511680866345.9933667-UTR-A-nodosum_M_contig1:2086547..2086751Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 2086548..2086751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866346.0033314-CDS-A-nodosum_M_contig1:2086751..20873631680866346.0033314-CDS-A-nodosum_M_contig1:2086751..2087363Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2086752..2087363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.164.1prot_A-nodosum_M_contig1.164.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1 2086752..2087363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1.164.1

>prot_A-nodosum_M_contig1.164.1 ID=prot_A-nodosum_M_contig1.164.1|Name=mRNA_A-nodosum_M_contig1.164.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=204bp
MVYIGRSHLFPSTPHLPTTGRRTQEAKTVWNGRWLNLMCKHSPFQMDGVG
EVAQCSWEGAYQVTLDHKSGIHTSNIPLDPSSWTYFGLCWKGVYYVWTVL
CFGWCSSPYIYHTLSEAVTQYLRGKGISALAWLDGSWLTNEKATQHGSLQ
DQARAAHSATCLALTVFYKCGYFISFSECSLALSTRRVYLGVICDSQTRR
FEVP
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mRNA from alignment at A-nodosum_M_contig1:2086548..2087363+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1.164.1 ID=mRNA_A-nodosum_M_contig1.164.1|Name=mRNA_A-nodosum_M_contig1.164.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2086548..2087363+ (Ascophyllum nodosum dioecious)
TCTCGGCAGTGAACGCCATTGGTGCTCAATTGCGTGACCCGATCATCTCG GGACTGACCCAATGGCGTATGGCGGTTCGAATAAATAAATGGACGCCACC GCGGAAATTGGGAGGAATCCCGTGAGTAAGCATGTACCCCCCGAGTTCGA AGATTGGGTCTCTGAAGAAATTTCCAAATTACATAGCAATGGCTGCATCA TGCCATGGTCTACATTGGCCGATCCCACCTCTTCCCCTCGACCCCACATC TGCCTACCACTGGGCGTAGAACCCAGGAAGCCAAGACTGTTTGGAACGGT CGATGGCTCAACCTTATGTGCAAACATTCGCCTTTCCAAATGGACGGAGT AGGAGAGGTCGCTCAGTGCTCCTGGGAAGGAGCATATCAGGTCACACTAG ACCACAAATCAGGTATCCACACCAGTAACATACCCCTCGACCCTTCTTCC TGGACATATTTCGGACTATGCTGGAAGGGTGTCTACTACGTCTGGACTGT GCTATGCTTCGGCTGGTGCTCTTCCCCGTACATTTACCACACTCTAAGCG AGGCAGTAACTCAGTACCTGCGAGGAAAAGGTATCTCGGCCCTAGCGTGG CTGGACGGCTCCTGGCTGACGAACGAGAAGGCAACACAGCACGGATCCTT ACAAGATCAAGCACGAGCCGCCCATTCAGCCACCTGCCTGGCCCTAACAG TGTTCTACAAATGCGGCTACTTCATCTCGTTTTCCGAGTGCTCCCTCGCG CTGTCTACCCGCCGCGTTTACCTGGGCGTTATCTGCGACTCACAAACGCG TCGGTTCGAGGTCCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1:2086548..2087363+

>mRNA_A-nodosum_M_contig1.164.1 ID=mRNA_A-nodosum_M_contig1.164.1|Name=mRNA_A-nodosum_M_contig1.164.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2086548..2087363+ (Ascophyllum nodosum dioecious)
ATGGTCTACATTGGCCGATCCCACCTCTTCCCCTCGACCCCACATCTGCC
TACCACTGGGCGTAGAACCCAGGAAGCCAAGACTGTTTGGAACGGTCGAT
GGCTCAACCTTATGTGCAAACATTCGCCTTTCCAAATGGACGGAGTAGGA
GAGGTCGCTCAGTGCTCCTGGGAAGGAGCATATCAGGTCACACTAGACCA
CAAATCAGGTATCCACACCAGTAACATACCCCTCGACCCTTCTTCCTGGA
CATATTTCGGACTATGCTGGAAGGGTGTCTACTACGTCTGGACTGTGCTA
TGCTTCGGCTGGTGCTCTTCCCCGTACATTTACCACACTCTAAGCGAGGC
AGTAACTCAGTACCTGCGAGGAAAAGGTATCTCGGCCCTAGCGTGGCTGG
ACGGCTCCTGGCTGACGAACGAGAAGGCAACACAGCACGGATCCTTACAA
GATCAAGCACGAGCCGCCCATTCAGCCACCTGCCTGGCCCTAACAGTGTT
CTACAAATGCGGCTACTTCATCTCGTTTTCCGAGTGCTCCCTCGCGCTGT
CTACCCGCCGCGTTTACCTGGGCGTTATCTGCGACTCACAAACGCGTCGG
TTCGAGGTCCCG
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