mRNA_A-nodosum_M_contig1.138.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE) HSP 1 Score: 216 bits (550), Expect = 5.730e-64 Identity = 110/182 (60.44%), Postives = 133/182 (73.08%), Query Frame = 1
Query: 31 VDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMVEVTKAVYKQKMLDEVFPAIKRTWPGGPSPVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTV 576
+DEKWFY+ KQGQRYY GE LP+ KV+HKSH+ KVMFLA V RPR+D+ +R FDGKIGI+PFT + AQR+ RN AAGTM T VEV + +YK K+ + VFP I+ +P P + QQ+NAP H+ +DPD+VAA I L+NQPPNSPD NILDL FFNSIQSLQDRTT TV
Sbjct: 60 LDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFPSSPI-IFAQQENAPGHRAMEDPDVVAAAGQGAGRIELVNQPPNSPDCNILDLGFFNSIQSLQDRTTPTTV 239
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: UPI000B906F28 (uncharacterized protein LOC110892967 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B906F28) HSP 1 Score: 197 bits (501), Expect = 6.270e-60 Identity = 102/194 (52.58%), Postives = 134/194 (69.07%), Query Frame = 1
Query: 1 SIDNMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTV 576
S +M NVV +DEKWFY+ K +RYYL GE+ P+ K K I KVMFLA V RPR+DT N F GKIGIFPFT+ PA+RSS+NR AGT+ETK ++ V K V + ++D+V PAI+ WP G + P+ +QQDNA H DD + + DG++IRL QPPNSPD N+LDL FF++IQSLQ++ L ++
Sbjct: 10 SFYDMFNVVHIDEKWFYLSKPSKRYYLLPGEDEPLRTCKSKKFITKVMFLAAVARPRFDTSGNERFSGKIGIFPFTKLEPAKRSSKNRVAGTLETKPILSVIKEVTRSWLIDKVLPAIRDKWPQGHTGPIFIQQDNAKPHNNIDDEQFIQEASRDGFDIRLRFQPPNSPDLNVLDLGFFHAIQSLQEQEVLGSI 203
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: UPI000B8F2756 (uncharacterized protein LOC110913170 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B8F2756) HSP 1 Score: 199 bits (507), Expect = 4.350e-59 Identity = 105/194 (54.12%), Postives = 134/194 (69.07%), Query Frame = 1
Query: 1 SIDNMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTV 576
S +M NVV +DEKWFYM K + YYL GE+ P+ K K K I KVMFLA V RPR+DT+ N F GKIGIFPFT+ PA+RSS+NR AGTMETK ++ VTK V + ++D+V PAI+ WP G + P+ +QQDNA H DD V + G++IRL QPPNSPD N+LDL FF +IQSLQ++ L ++
Sbjct: 160 SFYDMFNVVHIDEKWFYMSKPSKSYYLVPGEDEPLRKCKSKKFITKVMFLAAVARPRFDTLGNEIFSGKIGIFPFTKLEPAKRSSKNRVAGTMETKPILSVTKEVTRSWLIDKVLPAIRDKWPQGHTGPIFIQQDNAKPHISIDDEQFVQEASRGGFDIRLRFQPPNSPDLNVLDLGFFRAIQSLQEQEVLGSI 353
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: A0A6P6X993_COFAR (uncharacterized protein LOC113741020 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6X993_COFAR) HSP 1 Score: 192 bits (489), Expect = 1.450e-57 Identity = 98/185 (52.97%), Postives = 130/185 (70.27%), Query Frame = 1
Query: 7 DNMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGP--SPVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQ 552
+NM N+V +DEKWFYM K+ ++YYL EE P+ + K I KVMFLA V RPR+D N+ FDGKIGIFPF + PA+R+S+NR AGT+ETK ++ VTK VY++ ++D V PAI+ WP SP+ +QQDNA H D + + A T +G++IRL QPPNSPD N+LDL +F +IQSLQ
Sbjct: 56 ENMFNMVHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSDVISPIFIQQDNAKPHIDPMDVEFIEAATREGFDIRLSFQPPNSPDMNVLDLGYFRAIQSLQ 240
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: UPI000B909CC2 (uncharacterized protein LOC110944619 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B909CC2) HSP 1 Score: 188 bits (478), Expect = 1.820e-57 Identity = 99/194 (51.03%), Postives = 130/194 (67.01%), Query Frame = 1
Query: 1 SIDNMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTV 576
S +M NVV +DEKWFYM K + YYL GE+ P+ K K I KVMFLA V RPR+DT+ N F GK+GIFPFT+ PA+RSS+NR G METK ++ VTK V + ++D+V PAI+ WP + P+ +QQDNA DD V + G++IRL QPPNSPD N+LDL FF++IQSLQ++ L ++
Sbjct: 10 SFYDMFNVVHIDEKWFYMSKSSKGYYLVPGEDEPLRTCKSKKFITKVMFLAAVARPRFDTLGNEIFSGKVGIFPFTKLEPAKRSSKNRVTGNMETKPILSVTKEVTRSWLIDKVLPAIRDKWPQDHTGPIFIQQDNAKPQISIDDEQFVQEASRGGFDIRLSFQPPNSPDLNVLDLGFFHAIQSLQEQEVLGSI 203
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: A0A6P6VBP7_COFAR (uncharacterized protein LOC113715216 n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6VBP7_COFAR) HSP 1 Score: 192 bits (489), Expect = 2.310e-57 Identity = 98/185 (52.97%), Postives = 130/185 (70.27%), Query Frame = 1
Query: 7 DNMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGP--SPVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQ 552
+NM N+V +DEKWFYM K+ ++YYL EE P+ + K I KVMFLA V RPR+D N+ FDGKIGIFPF + PA+R+S+NR AGT+ETK ++ VTK VY++ ++D V PAI+ WP SP+ +QQDNA H D + + A T +G++IRL QPPNSPD N+LDL +F +IQSLQ
Sbjct: 73 ENMFNMVHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSDVISPIFIQQDNAKPHIDPMDVEFIEAATREGFDIRLSFQPPNSPDMNVLDLGYFRAIQSLQ 257
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: UPI001C27372B (uncharacterized protein LOC121774291 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27372B) HSP 1 Score: 195 bits (496), Expect = 2.450e-57 Identity = 99/191 (51.83%), Postives = 132/191 (69.11%), Query Frame = 1
Query: 10 NMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMV-EVTKAVYKQKMLDEVFPAIKRTWPGGPSP-VSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTV 576
NM N V +DEKWFY+ K QRYYL E P K+K++I K+MF+ V RP + FDGKIGIFPFT +VPA+R+S+NR AGT+ETK + +TK V KQ +++++ PAI WP G S +++QQDNA H N DPD AA T +G+NI+++ QPPNSPDTN+ DL +F +IQSLQ +TT T+
Sbjct: 158 NMHNTVHIDEKWFYITKGSQRYYLAPEENEPHRTCKNKNYISKIMFMCAVTRPLFSDNGEVLFDGKIGIFPFTEQVPAKRNSKNRYAGTLETKPIASITKEVTKQCIINKIIPAIMEKWPEGRSKFITIQQDNAKPHIANHDPDFRAAATQNGFNIQIVQQPPNSPDTNVNDLGWFRAIQSLQLQTTCNTL 348
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: UPI001C264D25 (uncharacterized protein LOC121774216 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C264D25) HSP 1 Score: 194 bits (493), Expect = 3.630e-57 Identity = 101/194 (52.06%), Postives = 127/194 (65.46%), Query Frame = 1
Query: 1 SIDNMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMVE-VTKAVYKQKMLDEVFPAIKRTWPGGPSP-VSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTV 576
M NVV +DEKWFYM K RYYL E+ P K K +I KVMF+ V RP++D ++DGK+GIFPFT +PAQR S+NRA GTMETK + VTKAV + ++ ++ PAIK WP G S + +QQDNA H DP+ A +DG++I+LI QPPNSPDTNILDL FF +IQSLQ +TV
Sbjct: 124 QFQGMHNVVHIDEKWFYMTKVSDRYYLLPDEDEPYRSCKSKRYITKVMFMCAVSRPQFDANGQATYDGKVGIFPFTEVLPAQRKSKNRARGTMETKAINSVTKAVMRDCLIHKIIPAIKAKWPVGASKDIYIQQDNATPHITAMDPEFQAVAKSDGFDIQLICQPPNSPDTNILDLGFFRAIQSLQHEKPCKTV 317
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: UPI000CD8BE7B (uncharacterized protein LOC111908693 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8BE7B) HSP 1 Score: 193 bits (490), Expect = 8.000e-57 Identity = 99/191 (51.83%), Postives = 132/191 (69.11%), Query Frame = 1
Query: 10 NMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTV 576
+M NVV +DEKWFYM K +RYYL GE+ P+ K K I KVMFLA V RPR+D+ N F GKIGI+PFT VPA+RSS+NR AGT+ETK ++ V K + K ++++V I+ WP G + P+ +QQDN H +D + + A + DG++IRL QPPNSPD N+LDL FF +IQSLQ++ LRT+
Sbjct: 167 DMFNVVHIDEKWFYMSKPSKRYYLVPGEDEPLRTCKSKKFITKVMFLAAVARPRFDSSGNEVFSGKIGIYPFTTLVPAKRSSKNRVAGTLETKPILSVNKEITKSWLIEKVLSDIRAKWPRGHTGPIFIQQDNVKPHVDVNDSEFLEAASRDGFDIRLCFQPPNSPDLNVLDLGFFRAIQSLQEQEALRTI 357
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3) HSP 1 Score: 193 bits (490), Expect = 1.630e-56 Identity = 99/193 (51.30%), Postives = 132/193 (68.39%), Query Frame = 1
Query: 1 SIDNMRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRT 573
+ +M NVV +DEKWFYM K +RYYL G++ P+ K K I K+MFLA V RPR+D+ N F GKIGI+PFT PA+RSS+NR AGTMETK ++ V K V + ++++V P I+ WP G + P+ +QQDNA H DD + + A + DG++IRL QPPNSPD N+LDL FF +IQSLQ++ L T
Sbjct: 164 TFHDMFNVVHIDEKWFYMSKPSKRYYLVPGDDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWPRGHTGPIFIQQDNAKPHIDVDDSEFLEAASRDGFDIRLCFQPPNSPDLNVLDLGFFRAIQSLQEQEALST 356 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1.138.1 >prot_A-nodosum_M_contig1.138.1 ID=prot_A-nodosum_M_contig1.138.1|Name=mRNA_A-nodosum_M_contig1.138.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=188bp MRNVVMVDEKWFYMFKQGQRYYLGAGEELPVHKVKHKSHIQKVMFLAVVGback to top mRNA from alignment at A-nodosum_M_contig1:1960734..1961309+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1.138.1 ID=mRNA_A-nodosum_M_contig1.138.1|Name=mRNA_A-nodosum_M_contig1.138.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at A-nodosum_M_contig1:1960734..1961309+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1:1960734..1961309+ >mRNA_A-nodosum_M_contig1.138.1 ID=mRNA_A-nodosum_M_contig1.138.1|Name=mRNA_A-nodosum_M_contig1.138.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at A-nodosum_M_contig1:1960734..1961309+ (Ascophyllum nodosum dioecious)back to top |