mRNA_A-nodosum_M_contig1.122.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1.122.1
Unique NamemRNA_A-nodosum_M_contig1.122.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1.122.1 vs. uniprot
Match: D7FMZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ7_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 1.780e-125
Identity = 175/261 (67.05%), Postives = 221/261 (84.67%), Query Frame = 1 
Query:    1 QVEDFEVDMEIDTAKLDVFGAIITQVKMEGRVPASTHLVYDCSHGEWLLAQIAYDRNVRLFSSRSVQQLGSISSSLPDNSRFIFSGALIPKQVKRILKMKGLTAVVANDAEGAMVLDDAMNTERDRLAAKKLSKVSQSRQRFLLEKGGGVDGKRSKEPPTHNIASKLRVFVRMREGQSVEELTDIIGAIDRECTNLDAIGLWGGSMNADMCLNMLEAVRTTSKMSQLRVALDHNGPSSSEWYTALRGPRRGPIMWTFGYDL 783
            +VEDFE+DME+DT KL+VFG IIT+VKMEGRVPAS+HLVYDCSHGEWLLAQ+AYDR +RLFSSRSV+QL SISSSLPDNSRFIFSGALIPKQ+KRILKMKGL+AVVA DAE  + ++++++ ER RLAAK LS++SQSR+R+LLEKGGG +G  ++  P  ++ S LR FVR++EGQSV+++ +I+  I++ C N+  +GLWGG M+ + CLNMLEAVRT S +S LRVA++H GP S+ W+T LRG RRGPIMWTF Y+L
Sbjct:    5 EVEDFEIDMEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLLSISSSLPDNSRFIFSGALIPKQIKRILKMKGLSAVVARDAESVVAMEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGA-NQRGPVGSLVSGLRTFVRIQEGQSVDDVAEIVNTIEQTCRNISVVGLWGGDMDPETCLNMLEAVRTKSGISNLRVAMEHLGPKSAGWFTGLRGARRGPIMWTFNYEL 264
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BLAST of mRNA_A-nodosum_M_contig1.122.1 vs. uniprot
Match: A0A836CMK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK3_9STRA)

HSP 1 Score: 190 bits (483), Expect = 5.270e-56
Identity = 104/263 (39.54%), Postives = 159/263 (60.46%), Query Frame = 1 
Query:    1 QVEDFEVDMEIDTAKLDVFGAIITQVKMEGRVPASTHLVYDCSHGEWLLAQIAYDRNVRLFSSRSVQQLGSISSSLPDNSRFIFSGALIPKQVKRILKMKGLTAVVANDAEGAMVLDDAMNTERDRLAAKKLSKVSQSRQRFLLEKGGGVDGKRSKEPPTHNIASKLRVFVRMREGQSVEE--LTDIIGAIDRECTNLDAIGLWGGSMNADMCLNMLEAVRTTSKMSQLRVALDHNGPSSS-EWYTALRGPRRGPIMWTFGYD 780
            +VE F+VD +ID  +LD     IT VK +G VPAS+++VYDC+HG+WLL Q+AYDR ++LF+SRS   +  +++ +PD+++ +F+GA +PK  KR+LK++ L +VV  DA  A  L DAM  ER RLAAK LSKVS++R+R+L   GG         PP   +  ++RVF+++ E  S     +   +  +   C  ++ +GLWG    A     +L+ V+      +L+V L + G   S +W   L G  RG I+WTF ++
Sbjct:   41 EVESFDVDFDID--RLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGGA-----QLAPPDTAVLERIRVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWGEGRGA---YALLQEVKAAVNAPKLKVTLPYRGVEESFKWNQGL-GEGRGSIIWTFEFE 292
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BLAST of mRNA_A-nodosum_M_contig1.122.1 vs. uniprot
Match: A0A6V1VHY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VHY5_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 1.070e-15
Identity = 67/257 (26.07%), Postives = 122/257 (47.47%), Query Frame = 1 
Query:   22 DMEIDTAKLDVFGAIITQVKMEGRVPASTHLVYDCSHGEWLLAQIAYDRNVRLFSSRSVQQLGSISSSLPD--NSRFIFSGALIPKQVKRILKMKGLTAVVANDAEGAMVLDDAMNTERDRLAAKKLSKVSQSRQRFLLEKGGGVDGKRSKEPPTHNIASKLRVFVRMREGQSVEELTDIIGAIDRECTNLDAIGLWGGSMNADMCLNMLE--AVRTTSKMSQLRVALDHNGPSSSEWYTALRGPRRGPIMWTFGYD 780
            +M+ID   +++F   IT +K   +   +  +  +C+  EW+ AQIA DR +  F SRS   L   + + PD  ++  + +G ++ KQVKR+ K   +  +  ++ E A +L   +  E  R   K+ SKVS SR ++L  K G    K   E   +     LR+    ++ ++ ++L D I AI+++C NL+  G+   S+ +      ++    R   K  Q ++A+  +    + +Y       R  +    G D
Sbjct:   83 EMDIDGDAINLFNERITTLK---KALPTARICLECTGLEWIFAQIAQDRGIDAFYSRSATALRKYAETAPDVADATLLLTGKVLEKQVKRLAKFPEVNCIAVSNKEEADILSQGLAAEIARAMKKRRSKVSASRDKYLDAKTGDSRAKGYLESANYI----LRISSEQQD-KAGQQLLDDIEAIEKDCENLNFHGVILDSVESIETYRAIKDKLKRFCHKPDQFKIAIPFDESKDAAFYKDFPTDSRQTLWLVQGKD 331
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMZ7_ECTSI1.780e-12567.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMK3_9STRA5.270e-5639.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1VHY5_HETAK1.070e-1526.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:1810047..1812668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size786
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002900.1
Cds size762
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.122.1prot_A-nodosum_M_contig1.122.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1 1810047..1812644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866344.2216604-CDS-A-nodosum_M_contig1:1810046..18101481680866344.2216604-CDS-A-nodosum_M_contig1:1810046..1810148Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 1810047..1810148 -
1680866344.2318301-CDS-A-nodosum_M_contig1:1810377..18104861680866344.2318301-CDS-A-nodosum_M_contig1:1810377..1810486Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 1810378..1810486 -
1680866344.241444-CDS-A-nodosum_M_contig1:1811132..18113411680866344.241444-CDS-A-nodosum_M_contig1:1811132..1811341Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 1811133..1811341 -
1680866344.255435-CDS-A-nodosum_M_contig1:1811780..18119041680866344.255435-CDS-A-nodosum_M_contig1:1811780..1811904Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 1811781..1811904 -
1680866344.2709095-CDS-A-nodosum_M_contig1:1812083..18121341680866344.2709095-CDS-A-nodosum_M_contig1:1812083..1812134Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 1812084..1812134 -
1680866344.2810037-CDS-A-nodosum_M_contig1:1812477..18126441680866344.2810037-CDS-A-nodosum_M_contig1:1812477..1812644Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 1812478..1812644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866344.2908382-UTR-A-nodosum_M_contig1:1812644..18126681680866344.2908382-UTR-A-nodosum_M_contig1:1812644..1812668Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 1812645..1812668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1.122.1

>prot_A-nodosum_M_contig1.122.1 ID=prot_A-nodosum_M_contig1.122.1|Name=mRNA_A-nodosum_M_contig1.122.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=254bp
MEIDTAKLDVFGAIITQVKMEGRVPASTHLVYDCSHGEWLLAQIAYDRNV
RLFSSRSVQQLGSISSSLPDNSRFIFSGALIPKQVKRILKMKGLTAVVAN
DAEGAMVLDDAMNTERDRLAAKKLSKVSQSRQRFLLEKGGGVDGKRSKEP
PTHNIASKLRVFVRMREGQSVEELTDIIGAIDRECTNLDAIGLWGGSMNA
DMCLNMLEAVRTTSKMSQLRVALDHNGPSSSEWYTALRGPRRGPIMWTFG
YDL*
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mRNA from alignment at A-nodosum_M_contig1:1810047..1812668-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1.122.1 ID=mRNA_A-nodosum_M_contig1.122.1|Name=mRNA_A-nodosum_M_contig1.122.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2622bp|location=Sequence derived from alignment at A-nodosum_M_contig1:1810047..1812668- (Ascophyllum nodosum dioecious)
CAGGTGGAAGACTTCGAGGTGGATATGGAGATCGACACGGCGAAGCTAGA
CGTTTTCGGTGCGATCATCACGCAGGTCAAAATGGAAGGGCGGGTTCCGG
CGTCGACGCATCTGGTGTATGACTGTTCCCACGGGGAGTGGCTCTTGGCC
CAGATTGCGTACGATAGGAATGTACGTCTTTTCTCCAGCAGGTAGGCTTG
CGGTGGATGCGCCTTCCGTCAGGTATATATTTAGGTGTGCACCTCTCGAA
ATTGCGTGGCGAATGTTGAAGACACCCTTCACTCTCTCGCAAGCTCTGCG
CTCTCTGGGCGCGATGTTAAAGCTTCAAGTCCTCCGTGGTACTCTGCCGT
GTTTGATAAGACTGATAAGACGAGAGAAGGTTTTTAAACCTCGTGTAGTG
CCAATAAAACCACTTTCCGCTGCAAGTCAAAGATGTCATTGAGGTGAAGC
TTTTCGATCACGACCAGCAGAACTCGGTAAGTCTTTGTCCATCACGTCAC
ATCCGATCCTCGCCTGTATTCCATATGTGTTCAGATCTGTCCAGCAGCTC
GGAAGTATCTCATCTTCCTTGCCCGACAACTCGAGGTAAGTAATGACACA
TGTTAACGTTTGTCGATTTATTTTAGTAATGACTCCGTGGACCACATGTA
TACGCACGTCTACTGTCACATGTATACTTAGCGCCTTCGCCTTCGAATAT
CTACTGCGAGTGGTCACCCCTGTAGGCTCCCGCTTCGTCGGTTCAAACTC
GTTTCCATGGCCAGGTTCATCTTTTCTGGGGCATTGATCCCGAAGCAGGT
GAAACGTATCTTAAAAATGAAGGGTTTGACGGCCGTTGTCGCCAATGATG
CCGAAGGAGCGATGGTACTAGATGACGCTATGAACACGGTGGGTTCAAGT
TCGTTTGCGCGAATCTCTCGGCATGTTTTTACTATTAGTACTACAACGCT
ATAATATTTCAATCTTGTTTCTGTCAACACAAGTTATTTGACTTTTACAA
GCGAGATACCAGGGGTCAATCTGACCTTCAGGTCGACGGGTACACGGTAT
CCCCACCATGTCGCCATAGCTTGACATTGATGTTCGTTGACCTCCGTCAC
GCGCAAGATATTTGTGGACAATAGAACACGAGGAACATCCTGTATCAGTA
TAACTAACGTCCTATCAATAGTATAAATAATATTAGTATCATGTACCCAG
AGTAGTAAAATGTATAGTGTTTTATCTATGAGCTATACTCGAATACTCGA
CAGCCATTATTATCGGCCACATGTTGCTCTGGACCATTGACTTATTAAAG
TAAATACCGTAACATTCTAAAAAACAGGAACGTGATCGACTGGCGGCAAA
GAAACTCTCGAAAGTCAGCCAATCTCGTCAGCGATTCTTGCTCGAGAAGG
GGGGTGGGGTCGATGGGAAGAGATCCAAGGAACCGCCCACACATAACATC
GCGTCGAAGCTGCGTGTCTTCGTTCGCATGCGGGAGGGGCAGTCGGTCGA
AGAACTCACGGATATAATCGGGGCTATAGATCGAGAGTAAGTACATAGAT
ACTAGTCTACTGGTAGACTATATATGCATGTTTGTATGGTCATCACATAT
AGCAAGAGTATGGATCAACCGGGTAAGGTTGCCATCAGCTGAACAGGGAA
AATGAGTATTCCTCTGTCCCCGTTCGCGCCTGAGAATTTGGTCTCGCGCG
CGTTCGGCAATCCCGTGCCGCGTCAGCCTGCTCATCTCCATTCTCAGGCT
GAATATGGTGCTTACTTAAGGGATTCCTCCCGAGTTCCGCGGCGGCGTCC
ATTTTTGAAACCGCCATTCGCCATCGGGTCAGTCCCAAGTTTATCGGGTC
ACGCAATTGCGTACCGATGACGTTCACTGCCTAGAGTCCGCCGGCACAGA
GCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCAC
CATGGACCAATTAATATGAGCCTCTCTTTCCCACACCCACCAATGGTATG
AAGTGGGCATGTTGAAAGTACCGGCGATATTTGCACACGCGAATATCTAT
CCGTTCGAGAAGAACATCTGTGGCGAAGCAGCGTGCAGATGGTTGGACGC
CTTCGACTCGTAGGGAGAAATTGCACGTTTATCTATCGTATATGGTACCA
TGAAGCGCAACACGGTGACTCGCCACGTACAGGTGCACGAATCTTGACGC
AATCGGTCTCTGGGGGGGCAGCATGAACGCGGACATGTGCTTAAACATGC
TCGAGGCGGTTCGTACCACTTCGAAGATGTCTCAACTCAGGGTAAGCAAT
TGTGGTGATTGATGTGTTTGGATACCAGTGGCCTTAACCGTCAATGCGCT
GGTTGAAATATCGACAATAGCGACAGATTTCAAGTTATGTGAGAATATTT
CTCCTCATTTGCTGAGTGTGTTGGGTGTAAATTAGTTGGTTCAGTTCGTA
CGTTATACTGGTACGTACTTCATGTGTCTTTTACAAGCACTACGTTTACC
TTTCGAACTTTTGCCTTCAGGTTGCGTTGGACCACAATGGTCCGTCCAGT
TCGGAATGGTACACAGCGCTCCGAGGACCAAGGAGAGGGCCAATCATGTG
GACATTCGGCTACGACTTGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1:1810047..1812668-

>mRNA_A-nodosum_M_contig1.122.1 ID=mRNA_A-nodosum_M_contig1.122.1|Name=mRNA_A-nodosum_M_contig1.122.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at A-nodosum_M_contig1:1810047..1812668- (Ascophyllum nodosum dioecious)
ATGGAGATCGACACGGCGAAGCTAGACGTTTTCGGTGCGATCATCACGCA
GGTCAAAATGGAAGGGCGGGTTCCGGCGTCGACGCATCTGGTGTATGACT
GTTCCCACGGGGAGTGGCTCTTGGCCCAGATTGCGTACGATAGGAATGTA
CGTCTTTTCTCCAGCAGATCTGTCCAGCAGCTCGGAAGTATCTCATCTTC
CTTGCCCGACAACTCGAGGTTCATCTTTTCTGGGGCATTGATCCCGAAGC
AGGTGAAACGTATCTTAAAAATGAAGGGTTTGACGGCCGTTGTCGCCAAT
GATGCCGAAGGAGCGATGGTACTAGATGACGCTATGAACACGGAACGTGA
TCGACTGGCGGCAAAGAAACTCTCGAAAGTCAGCCAATCTCGTCAGCGAT
TCTTGCTCGAGAAGGGGGGTGGGGTCGATGGGAAGAGATCCAAGGAACCG
CCCACACATAACATCGCGTCGAAGCTGCGTGTCTTCGTTCGCATGCGGGA
GGGGCAGTCGGTCGAAGAACTCACGGATATAATCGGGGCTATAGATCGAG
AGTGCACGAATCTTGACGCAATCGGTCTCTGGGGGGGCAGCATGAACGCG
GACATGTGCTTAAACATGCTCGAGGCGGTTCGTACCACTTCGAAGATGTC
TCAACTCAGGGTTGCGTTGGACCACAATGGTCCGTCCAGTTCGGAATGGT
ACACAGCGCTCCGAGGACCAAGGAGAGGGCCAATCATGTGGACATTCGGC
TACGACTTGTGA
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