Trimin1|152212|gw1.70.104.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|152212
Unique NameTrimin1|152212|gw1.70.104.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length248
Homology
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A836C8T8_9STRA (ER membrane protein complex subunit 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T8_9STRA)

HSP 1 Score: 369 bits (946), Expect = 5.040e-127
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCAA 248
            MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCAA
Sbjct:    1 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCAA 248          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: D8LJ58_ECTSI (ER membrane protein complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ58_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 2.750e-41
Identity = 97/247 (39.27%), Postives = 129/247 (52.23%), Query Frame = 0
Query:    1 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCA 247
            MS ++L  L   A  G     RDLLRF+RKEK+R P L ++YG  L+    +LG++ WV+HEQ+  AALD  D+  A   +  L RKFPGS RV+ L  M  EA G   AA   Y  +++ANPAN++A KR+VA L+A G T  AV ALN +L +   D EAW QLA                                           + ++RARKHF+Q+++L   G     AR LHGLC +CA
Sbjct:    1 MSLKKLPELCREASGGKLSPLRDLLRFLRKEKIRRPDLCLQYGKQLLTYGRSLGDELWVIHEQMVTAALDSGDVPTAHEHLQVLTRKFPGSQRVRRLEGMRCEAEGSFAAAAAIYEEMVEANPANSLARKRQVAVLIAKGDTAGAVKALNGYLAEFAADGEAWLQLAKLHIGALNYAAAAFCYEELVLVAPSDHVVHCRLGEVYYTMGGAENLMRARKHFSQSVDLLKAGN----ARGLHGLCQTCA 243          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A6H5KPY1_9PHAE (ER membrane protein complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.670e-36
Identity = 78/167 (46.71%), Postives = 103/167 (61.68%), Query Frame = 0
Query:    1 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLA 167
            MS ++L  L   A  G     RDLLRF+RKE++R P L ++YG  L+    +LG++ WV+HEQ+  AALD  D+  A   +  L RKFPGS RV+ L  M  EA G   AA   Y  +++ANPAN++A KR+VA L+A G T  AV ALN +L +   D EAW QLA
Sbjct:    1 MSLKKLPELCREASGGKLSPLRDLLRFLRKERIRRPDLCLQYGKQLLTYGRSLGDELWVIHEQMVTAALDSGDVPTAHEHLQVLTRKFPGSQRVRRLEGMRCEAEGSFAAAAAIYEEMVEANPANSLARKRQVAVLIAKGDTAGAVKALNGYLAEFAADGEAWLQLA 167          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A7S3XW17_HETAK (ER membrane protein complex subunit 2 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW17_HETAK)

HSP 1 Score: 122 bits (306), Expect = 1.120e-30
Identity = 71/165 (43.03%), Postives = 101/165 (61.21%), Query Frame = 0
Query:    4 QELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAA 168
            QEL +L + AG    +++ +LL ++R  K+R P LV +YG+ L+NS  +LG++ W ++EQV  A+LD  +   A   + AL++KFPGS+RVK L  +  E+  +   AE  YA +L ANPAN +A KRR A  LA G+   A  AL D+L   P D  AW QL A
Sbjct:    3 QELATLIEKAG--SKKSSLELLAYMRAHKVRRPDLVFKYGVKLLNS--SLGDEVWTIYEQVFMASLDLGEQEVANHALNALKKKFPGSSRVKRLAGLYEESEENYPQAEALYAELLAANPANTLALKRRAAVELARGRPAAAARALGDYLRDFPADVAAWEQLLA 163          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A7S2S8F2_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8F2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.180e-27
Identity = 87/243 (35.80%), Postives = 121/243 (49.79%), Query Frame = 0
Query:    8 SLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG--ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCAA 248
            S+    GR  + A   LL++IR  KLRE  LV++YG PL+   G  ALG++ W V EQV  AALD  D+  A+AC+  L  +FP S RVK LV M SEA  D  AA   Y  +L+ANPAN +A KR++  L A  +   A+  LN+++++   D  AW +LA                                           +  + ARKHF ++LEL+ +       RALHGL + C+A
Sbjct:   14 SVVKTKGRSTA-AVTALLKYIRTHKLRESKLVVQYGKPLVQGGGGSALGDEKWTVLEQVFIAALDTKDMDLADACLRGLHTQFPDSARVKRLVGMKSEAERDYTAALQIYDELLEANPANQLAMKRKICILRADNKVQSAIHELNEYIKRFQADASAWQELADLYLSVAKYDSAAFCYEELILHNPMSHLLHCRLGEIYYTLGKENLTV-ARKHFCKSLELKRKDNP----RALHGLRSCCSA 250          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A3F2S295_9STRA (ER membrane protein complex subunit 2 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S295_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.500e-27
Identity = 82/228 (35.96%), Postives = 108/228 (47.37%), Query Frame = 0
Query:    1 MSKQELDS-LADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 226
            M ++E +  LA A   G      +LL+++RKEKLREP  V   G  L+      LG + W V+EQ C AALD  D   AE C+ AL+ KFPGS+RV  L  M  E RG+   A   Y  +L+ANPANA+  KR++A L A  +T   V ALN+ L     D  AWT+L                                            D +L ARKH+A ++EL
Sbjct:    1 MGQREFEQKLAAAEQGGARDRCVELLQYVRKEKLREPRAVASIGKLLVTKHSWGLGGEAWAVYEQTCIAALDVHDDELAETCLKALQTKFPGSSRVARLEGMFLEQRGEFAKALALYDELLEANPANALVLKRKIAVLKAQKKTADVVTALNEFLRSFGTDLAAWTELGETYLSLGAYRYAAFCYEELVLLNPMDSIFHSRLADIYSTIGGLDNLLTARKHYAHSIEL 228          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: H3HDU6_PHYRM (ER membrane protein complex subunit 2 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDU6_PHYRM)

HSP 1 Score: 115 bits (288), Expect = 3.500e-27
Identity = 79/219 (36.07%), Postives = 107/219 (48.86%), Query Frame = 0
Query:    9 LADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 226
            LA A G G  +   +LL+++R+EKLREP  V   G  L+      LG++ W V+EQ   AALD  D   A+ C+TAL+RKFPGS+RV  L  M  E RG+   A   Y  +L++NPAN +  KR++A L A  +T   VAALN+ L     D  AWT+L                                            D +L ARKH+A ++EL
Sbjct:   10 LAAAEGSGARERCVELLQYVRREKLREPRAVARVGQLLVTKHSWGLGDELWSVYEQTLVAALDLHDDELADTCLTALQRKFPGSSRVARLEGMRLEQRGEFVKALALYDELLESNPANMLVLKRKIAVLKAQKKTADVVAALNELLRSFGSDLAAWTELGETYLSMGAYRYAAFCYEEMVLLNPMDAISHSRLADIYSTVGGLDNLLTARKHYAHSIEL 228          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: W2QL82_PHYPN (ER membrane protein complex subunit 2 n=9 Tax=Phytophthora TaxID=4783 RepID=W2QL82_PHYPN)

HSP 1 Score: 115 bits (287), Expect = 4.900e-27
Identity = 82/228 (35.96%), Postives = 110/228 (48.25%), Query Frame = 0
Query:    1 MSKQELDS-LADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 226
            M ++E +  LA A   G      +LL ++RKEKLREP  V   G  L+      LG++ W V+EQ   AALD  D   AE C+ AL+ KFPGS+RV  L  M  E RG+   A   YA +L+ANPANA+  KR++A L A  +T + V ALN+ L+    D  AWT+L                                            D +L ARKH+A ++EL
Sbjct:    1 MGQREFEQKLATAERSGARDKCVELLHYVRKEKLREPRAVASIGKLLVTKHSWGLGDELWGVYEQTFVAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQRGEFAKALVLYAELLEANPANALVLKRKIAVLKAQKKTAEVVTALNEFLKSFGTDQAAWTELGETYLSMGAYRYAAFCYEELVLLNPMDAISHSRLADIYSTIGGLDNLLTARKHYAHSIEL 228          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A225UXI0_9STRA (ER membrane protein complex subunit 2 (Fragment) n=6 Tax=Phytophthora TaxID=4783 RepID=A0A225UXI0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.210e-24
Identity = 79/226 (34.96%), Postives = 104/226 (46.02%), Query Frame = 0
Query:    7 DSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGK-----AVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 226
            + LA+A   G      DLL ++RKEKLREP  V   G  L+      LG++ W V+EQ   AALD  D   AE C+ AL+ KFPGS+RV  L  M  E RG+   A   Y  +L+ANPANA+  KR++A L A  +T        + ALN+ L     D  AWT+L                                            D +L ARKH+A ++EL
Sbjct:    8 EKLAEAERSGARHQCVDLLHYVRKEKLREPRAVATVGKLLVTKHSWGLGDELWSVYEQTFIAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQRGEFAKALALYDELLEANPANALVLKRKIAVLKAQKKTADKKTADVITALNEFLRSFGTDQAAWTELGETYLSMGTYRYAAFCYEELVLLNPMDAISHSRLADIYSTIGGLDNLLTARKHYAHSIEL 233          
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A3M6V6N0_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6N0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.380e-24
Identity = 78/214 (36.45%), Postives = 101/214 (47.20%), Query Frame = 0
Query:   18 SQAARD----LLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 226
            S  ARD    LL ++RKEKLREP  V   G  L+      LG++ W V+EQ   AALD  D   +E C+ AL+ KFPGS+RV  L  M  E R +   A   Y  +L+ANPANA+  KR++A L A  +T   V ALN+ L     D  AWT+L                                            D +L+ARKH+A +LEL
Sbjct:   15 SNRARDDCLELLHYVRKEKLREPHAVASIGKLLVTKHSWGLGDELWTVYEQTFIAALDLHDDELSETCLKALQTKFPGSSRVARLEGMQLEQRREFTKALALYDELLEANPANALVFKRKIAVLKAQRKTADVVTALNEFLRSFGTDQTAWTELGETYLSIGTYRYAAFCYEELVLLNPMDAISHSRLADIYATIGGLDNLLKARKHYAHSLEL 228          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8T8_9STRA5.040e-127100.00ER membrane protein complex subunit 2 (Fragment) n... [more]
D8LJ58_ECTSI2.750e-4139.27ER membrane protein complex subunit 2 n=1 Tax=Ecto... [more]
A0A6H5KPY1_9PHAE6.670e-3646.71ER membrane protein complex subunit 2 n=1 Tax=Ecto... [more]
A0A7S3XW17_HETAK1.120e-3043.03ER membrane protein complex subunit 2 (Fragment) n... [more]
A0A7S2S8F2_9STRA1.180e-2735.80ER membrane protein complex subunit 2 n=1 Tax=Rhiz... [more]
A0A3F2S295_9STRA3.500e-2735.96ER membrane protein complex subunit 2 n=3 Tax=Phyt... [more]
H3HDU6_PHYRM3.500e-2736.07ER membrane protein complex subunit 2 n=1 Tax=Phyt... [more]
W2QL82_PHYPN4.900e-2735.96ER membrane protein complex subunit 2 n=9 Tax=Phyt... [more]
A0A225UXI0_9STRA2.210e-2434.96ER membrane protein complex subunit 2 (Fragment) n... [more]
A0A3M6V6N0_9STRA3.380e-2436.45ER membrane protein complex subunit 2 n=1 Tax=Pero... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 126..159
e-value: 220.0
score: 3.2
coord: 160..193
e-value: 0.017
score: 24.3
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 160..193
score: 9.1454
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 3..134
e-value: 1.3E-5
score: 27.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 135..232
e-value: 7.3E-16
score: 60.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 63..226
NoneNo IPR availablePFAMPF14559TPR_19coord: 136..196
e-value: 1.2E-8
score: 35.3
NoneNo IPR availablePANTHERPTHR12760:SF0ER MEMBRANE PROTEIN COMPLEX SUBUNIT 2coord: 11..247
IPR039856ER membrane protein complex subunit 2-likePANTHERPTHR12760TETRATRICOPEPTIDE REPEAT PROTEINcoord: 11..247

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_70contigContig_70:597113..597856 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152212mRNA_10909Tribonema minus UTEX_B_3156 mRNAContig_70 597113..597856 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|152212|gw1.70.104.1 ID=Trimin1|152212|gw1.70.104.1|Name=jgi.p|Trimin1|152212|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSK
GALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSM
LSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALN
DHLEQSPGDPEAWTQLAALHVALGSLDEAAFCYEELILIAPADPHHHCRL
AEAYFTLGTPDAVLRARKHFAQALELRGRGGGGGRARALHGLCASCAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR039856EMC2-like