Trimin1|163534|e_gw1.26.140.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|163534
Unique NameTrimin1|163534|e_gw1.26.140.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length223
Homology
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A835Z0H8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0H8_9STRA)

HSP 1 Score: 344 bits (883), Expect = 2.950e-118
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MSYGAAEGCKLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQRF 222
            MSYGAAEGCKLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQRF
Sbjct:    1 MSYGAAEGCKLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQRF 222          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A836CC59_9STRA (Chloroplast 29 kDa ribonucleoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC59_9STRA)

HSP 1 Score: 261 bits (668), Expect = 5.520e-86
Identity = 151/222 (68.02%), Postives = 169/222 (76.13%), Query Frame = 0
Query:    1 MSYGAAEGCKLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQRF 222
            MSYG+ EGCKLYVGNLGYDT +DTL  AF+ FG +QEASVA+DRETG SRGFGFVTY +P EAQAAMDNLN T+LDGRTIRVNLSQPR   +                              XXXXXXXXXXXXX   GNKLFIGNLGW+TTTD+L+ AF QYGQ+QDAIVMTDRETGSSRGFGFVTY  A +AQAAI+ +DG DFGGR+IRVNISEP+QR+
Sbjct:    1 MSYGS-EGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAG-----------------------------XXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQRY 192          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A836CBQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.660e-60
Identity = 119/217 (54.84%), Postives = 146/217 (67.28%), Query Frame = 0
Query:    7 EGCKLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGG---SSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQ 220
            +GCKLYVGNLGYDT +D L + FA +G I + +V +DR+TG SRGFGF+TYSS  EA AA DNL+G E+DGRTIRVN+S+PR      S GG XXXXXXXXXX                                 +KLF+GNLGW TT+++L QAF+QYG + DA V+TDRETG+SRGFGFVT+    AA+ AI GMDG +  GR IRVNIS+PK+
Sbjct:  178 DGCKLYVGNLGYDTTADQLESRFAEYGTISDLTVVTDRDTGNSRGFGFITYSSAAEAAAAADNLDGAEVDGRTIRVNISRPRAERNTFSEGGGXXXXXXXXXXDSAVD---------------------------SSKLFVGNLGWDTTSEDLQQAFAQYGDVVDAKVVTDRETGNSRGFGFVTFQSTEAAENAIGGMDGMELDGREIRVNISQPKK 367          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A0F7SR68_PHARH (Ps16 protein n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SR68_PHARH)

HSP 1 Score: 155 bits (392), Expect = 1.430e-43
Identity = 101/211 (47.87%), Postives = 129/211 (61.14%), Query Frame = 0
Query:   10 KLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQ 220
            KLYVGNL +    D+L   F P+G+IQ+  V  DRETG+SRGFGFVT+S   EAQAA+  LN  E++GR +R+NL+     G +GG              XXXXXXXXXXXXXXXX             G KL++GNL WS+    L Q FSQ+GQ+    V  DRETG SRGF F+T++    A AAI G++ ++  GR +RVN+S P Q
Sbjct:    4 KLYVGNLSWSFTDDSLAQTFQPYGSIQDCIVMKDRETGRSRGFGFVTFSQESEAQAAIQALNEQEIEGRQLRINLANGDRNGGAGGFGGASQGYQQQQSGXXXXXXXXXXXXXXXXGGDA---------GTKLYVGNLSWSSDEQSLSQTFSQFGQVTSVSVAKDRETGRSRGFAFITFSSQQEADAAINGLNDQEVEGRRLRVNMSNPPQ 205          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A8H6S255_9AGAR (Ps16 protein n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6S255_9AGAR)

HSP 1 Score: 153 bits (387), Expect = 9.270e-43
Identity = 95/210 (45.24%), Postives = 126/210 (60.00%), Query Frame = 0
Query:   10 KLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPK 219
            KLY+GNL +    D L+ AF P G I +  V  DRET +SRGFGFVTYS+  EA AA+  ++G +L GR+IRV+L+  +  G  G X           XXXXXXXXXX                     GNKL++GNL W+TT + L Q F ++G + D+I M DRETG  RGFGFVT++ A  AQ AI G++ ++  GR IRVN+++ K
Sbjct:    3 KLYIGNLSFKVDDDALYNAFHPHGQIVDHIVMKDRETQRSRGFGFVTYSTEDEANAALTQMDGQDLMGRSIRVSLANGKPSGGGGXXRGGYAGESYAGXXXXXXXXXXGSGWMLSTLKFPLILSAAMSSGNKLYVGNLSWNTTDEVLRQTFEEFGTVTDSIHMKDRETGRFRGFGFVTFSTADEAQNAIAGLNEQEVDGRRIRVNVAQGK 212          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A8H8JW91_9AGAM (RNA recognition motif protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JW91_9AGAM)

HSP 1 Score: 152 bits (383), Expect = 1.740e-41
Identity = 128/211 (60.66%), Postives = 150/211 (71.09%), Query Frame = 0
Query:   10 KLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFI-GNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPK 219
            K+YVGNL ++T  DTL  AF  FG + ++ V  DRETG+SRGFGFVTY +  EA  A+ ++N  ELDGR I+VN +  R GG  G XXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       GNL W+T  D L Q FSQYG + D+IVM DRETG SRGFGFVTY   G A  AIQ  +  +  GR I+VN++  +
Sbjct:    4 KIYVGNLSWNTNDDTLRDAFGQFGQVLDSIVMRDRETGRSRGFGFVTYGTQQEADNAISSMNDQELDGRRIKVNGANQRSGGGGGXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLSWNTNDDTLRQVFSQYGNVLDSIVMRDRETGRSRGFGFVTYASEGEASGAIQTANNIELDGRQIKVNLANAR 214          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A8H8M5M6_9AGAM (RNA recognition motif protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8M5M6_9AGAM)

HSP 1 Score: 150 bits (379), Expect = 6.530e-41
Identity = 126/210 (60.00%), Postives = 149/210 (70.95%), Query Frame = 0
Query:   10 KLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPK 219
            K+YVGNL ++T  +TL  AF+ FG I ++ V  DRETG+SRGFGFVTY +  EA AA+ N+N  ELDGR I+VN +  R  G    XXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      GNL W+T  D L Q FSQYG + D+IVM DRETG SRGFGFVTY   G A +AIQ  +  +  GR I+VN++  +
Sbjct:    4 KIYVGNLSWNTNDETLRQAFSEFGQILDSIVMRDRETGRSRGFGFVTYGTEQEADAAIQNMNDQELDGRRIKVNGANQR--GXXXXXXXXXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLSWNTNDDTLRQVFSQYGNVLDSIVMRDRETGRSRGFGFVTYATEGEAGSAIQKANNTELDGRQIKVNLANAR 211          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A484LRT8_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484LRT8_9ASTE)

HSP 1 Score: 140 bits (353), Expect = 5.020e-37
Identity = 81/218 (37.16%), Postives = 114/218 (52.29%), Query Frame = 0
Query:   10 KLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQP------RYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQR 221
            +L+VGNL +   S TL   F   GN++ A V  D+++G+SRGFGFVT S+  EA+AA+  LNG EL+GR +RVN   P       + GS GG                                            N+L++GNL W    + L   FS+ G++++A V+ DRE+G S+GFGFVTYT A     AI+ +DG D  GR IRV+++E + R
Sbjct:  119 RLFVGNLPFSVESATLANLFGEVGNVEVAEVIYDKQSGRSRGFGFVTMSTVEEAEAAVQQLNGYELEGRELRVNSGPPPPKRESSFRGSMGGGSGRYDNT------------------------------------NRLYVGNLSWGVDDEALENLFSEQGKVKEARVVYDRESGRSKGFGFVTYTSAEEVNNAIESLDGADLNGRPIRVSVAESRPR 300          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: A0A822ZB99_NELNU (Uncharacterized protein n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822ZB99_NELNU)

HSP 1 Score: 139 bits (350), Expect = 5.690e-37
Identity = 76/210 (36.19%), Postives = 112/210 (53.33%), Query Frame = 0
Query:   10 KLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPK 219
            + +VG L + T   +L  AF+P+G I E+ + +DRETG+SRGFGFVT+      + A++ +NG  LDGR I VN +Q R GG                                                 + F+G L WST    L +AFS YG+IQ++ +++DRETG SRGFGFVT+ D  + + AI+GM+G++  GR+I VN ++ +
Sbjct:    9 RCFVGGLAWATDDQSLERAFSPYGEILESKIINDRETGRSRGFGFVTFRDEQSMRDAIEGMNGQNLDGRNITVNQAQSRGGGG------------FSIPLFRSLFRHLLLFSLFLVQFRRVSAMASAEFEYRCFVGGLAWSTDDQSLERAFSAYGEIQESKIISDRETGRSRGFGFVTFRDEQSMRDAIEGMNGQNLDGRNITVNQAQSR 206          
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Match: UPI001FB064D6 (29 kDa ribonucleoprotein A, chloroplastic-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB064D6)

HSP 1 Score: 139 bits (351), Expect = 5.730e-37
Identity = 80/212 (37.74%), Postives = 107/212 (50.47%), Query Frame = 0
Query:   10 KLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQR 221
            KL+VGNL ++  S TL   F   GN++   V  D+ TG+SRGFGFVT S+P E +AA +  NG EL+GR +RVN   P   G S                                              N+L++GNL W      L   FS+ G++ +A V+ DRETG SRGFGFVTY+ A     AI+ ++G D  GR I+VN++E K R
Sbjct:   94 KLFVGNLPFNVDSATLAGLFEKVGNVEVVEVIYDKMTGRSRGFGFVTMSTPKEVEAAAEKFNGFELEGRPLRVNAGPPPPKGES-----------------------------PFRSPRSGGGGGSFGSNNRLYVGNLAWGVDESALETLFSEQGKVLEAKVVYDRETGRSRGFGFVTYSSAEEVNNAIESLNGADLNGRPIQVNVAESKPR 276          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163534 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0H8_9STRA2.950e-118100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CC59_9STRA5.520e-8668.02Chloroplast 29 kDa ribonucleoprotein n=1 Tax=Tribo... [more]
A0A836CBQ9_9STRA1.660e-6054.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0F7SR68_PHARH1.430e-4347.87Ps16 protein n=1 Tax=Phaffia rhodozyma TaxID=26448... [more]
A0A8H6S255_9AGAR9.270e-4345.24Ps16 protein n=1 Tax=Mycena indigotica TaxID=21261... [more]
A0A8H8JW91_9AGAM1.740e-4160.66RNA recognition motif protein n=2 Tax=Ceratobasidi... [more]
A0A8H8M5M6_9AGAM6.530e-4160.00RNA recognition motif protein n=1 Tax=Ceratobasidi... [more]
A0A484LRT8_9ASTE5.020e-3737.16Uncharacterized protein n=3 Tax=Cuscuta sect. Clei... [more]
A0A822ZB99_NELNU5.690e-3736.19Uncharacterized protein n=2 Tax=Nelumbo nucifera T... [more]
UPI001FB064D65.730e-3737.7429 kDa ribonucleoprotein A, chloroplastic-like n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 141..214
e-value: 0.97
score: 14.3
coord: 10..83
e-value: 0.49
score: 17.4
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 10..83
e-value: 1.7E-28
score: 110.6
coord: 141..214
e-value: 2.1E-30
score: 117.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 142..212
e-value: 1.2E-23
score: 82.7
coord: 11..81
e-value: 4.5E-23
score: 80.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..87
score: 20.303486
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 140..218
score: 20.542263
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..136
e-value: 2.8E-32
score: 113.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 137..221
e-value: 2.3E-30
score: 107.6
NoneNo IPR availablePANTHERPTHR48027HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATEDcoord: 6..132
coord: 137..219
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..116
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 138..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:1126834..1130442 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163534mRNA_2026Tribonema minus UTEX_B_3156 mRNAContig_26 1126834..1130442 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|163534|e_gw1.26.140.1 ID=Trimin1|163534|e_gw1.26.140.1|Name=jgi.p|Trimin1|163534|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=223bp
MSYGAAEGCKLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSR
GFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGYGGSS
GGAGGYGGSSGGYGGGAAAGGYGGGGGGFGGGGRGGGDGNKLFIGNLGWS
TTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQG
MDGRDFGGRSIRVNISEPKQRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf