Trimin1|163138|e_gw1.24.16.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|163138
Unique NameTrimin1|163138|e_gw1.24.16.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length200
Homology
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A836CGQ9_9STRA (NOT2_3_5 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ9_9STRA)

HSP 1 Score: 390 bits (1001), Expect = 5.390e-137
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MRQQRIAAAAADTTVSLCVTVICSLTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAADSAAQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLPVA 199
            MRQQRIAAAAADTTVSLCVTVICSLTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAADSAAQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLPVA
Sbjct:    1 MRQQRIAAAAADTTVSLCVTVICSLTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAADSAAQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLPVA 199          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A7S0C8Q4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8Q4_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.330e-68
Identity = 112/175 (64.00%), Postives = 133/175 (76.00%), Query Frame = 0
Query:   25 LTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAAD--SAAQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLP 197
            L GLL VIRM+D D N LALGSDLT LGLNL+SSE LY+TFA PW++ P++ EPQ+QLP CYYMQPP+LKT H SKF LETLFYIFYA+P D+LQAYAAQELY RDWR+H DLKLW KRA+  D  +A   ++I+FD N WERR F+G +  +         G +SEEDVRVK P
Sbjct:  150 LLGLLGVIRMSDADRNALALGSDLTLLGLNLNSSEHLYSTFASPWSDSPTTREPQYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQAYAAQELYSRDWRYHVDLKLWFKRASPVDVPNANGTQYIYFDINSWERRIFNGSMHQN------FPNGFLSEEDVRVKFP 318          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A7R9W176_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W176_9STRA)

HSP 1 Score: 223 bits (569), Expect = 3.000e-68
Identity = 111/178 (62.36%), Postives = 135/178 (75.84%), Query Frame = 0
Query:   25 LTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAADSAAQ-----VRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLP 197
            L GLL +IRMTD D N LALGSDLT LG+NL+SS+ LY+TFA PW+E P++ EPQ+QLP CYYMQPP+LKT H SKF LETLFYIFYA+P D+LQAYAAQELY R+WR+H DLKLW KR  A+D  A      +++I+FD N WERR F+G +         +TGG +SE+DVRVK P
Sbjct:  257 LLGLLSIIRMTDADRNALALGSDLTALGMNLNSSDKLYSTFASPWSESPTTREPQYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQAYAAQELYSREWRYHVDLKLWFKRGGASDGLAATANGGIQYIYFDVNTWERRLFNGNVQS-------VTGGFLSEDDVRVKFP 427          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A7S2XLH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLH6_9STRA)

HSP 1 Score: 224 bits (571), Expect = 5.820e-68
Identity = 115/176 (65.34%), Postives = 135/176 (76.70%), Query Frame = 0
Query:   25 LTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAADSA-----AQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVK 195
            L GLL VIRM+D D N LALGSDLT+LGLNL+SS+ LY+TFAGPW+E P++ EPQ+QLP CYYMQPP+LKT H SKF LETLFYIFYA+P D+LQAYAAQELY R+WR+H DLKLW KRA   D       A  +F+FFD N WERR F+G +  ++      T GLMSEEDVRVK
Sbjct:  313 LLGLLGVIRMSDADRNALALGSDLTSLGLNLNSSDQLYSTFAGPWSENPTTREPQYQLPMCYYMQPPALKTGHLSKFALETLFYIFYALPKDVLQAYAAQELYSREWRYHVDLKLWFKRAGPNDGVGNNGGAGNQFLFFDINTWERRIFNGNMNQNI------TSGLMSEEDVRVK 482          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A7S2EBZ5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBZ5_TRICV)

HSP 1 Score: 222 bits (566), Expect = 9.860e-68
Identity = 112/178 (62.92%), Postives = 134/178 (75.28%), Query Frame = 0
Query:   25 LTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAADSAAQV-----RFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLP 197
            L GLL VIRMTD D N LALGSDLT LG+NL+SS+ LY+TFA PW+E P++ EPQ+QLP CYYMQPP+LKT H SKF LETLFYIFYA+P D+LQAYAAQELY R+WR+H DLKLW KRA  +D          ++I+FD N WERR F+G +         +TGGL+SE+DVRVK P
Sbjct:  263 LLGLLSVIRMTDADRNALALGSDLTALGMNLNSSDKLYSTFASPWSESPTTREPQYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPRDVLQAYAAQELYSREWRYHVDLKLWFKRAGPSDGLTATANGGNQYIYFDVNTWERRLFNGNVQT-------ITGGLLSEDDVRVKFP 433          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A6U3ZWB8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZWB8_9STRA)

HSP 1 Score: 217 bits (552), Expect = 3.600e-65
Identity = 108/172 (62.79%), Postives = 131/172 (76.16%), Query Frame = 0
Query:   31 VIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAADSAAQ-----VRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLP 197
            VIRM+D D N LALGSDLT LGLNL SS+ LY+TFA PW+E P++ EPQ+QLP CYYMQPP+LKT H SKF LETLFYIFYA+P D+LQAYAAQELY R+WR+H +LKLW KRA  AD  A      V++I+FD N WERR F+G +  ++      T GL+SE+DVRV+ P
Sbjct:  312 VIRMSDADRNALALGSDLTALGLNLSSSDQLYSTFASPWSESPTTREPQYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQAYAAQELYSREWRYHVELKLWFKRAGPADGVANNAGSGVQYIYFDINSWERRLFNGNMNQNI------TSGLLSEDDVRVQFP 477          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A7S2PH42_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PH42_9STRA)

HSP 1 Score: 207 bits (527), Expect = 4.810e-64
Identity = 105/177 (59.32%), Postives = 130/177 (73.45%), Query Frame = 0
Query:   25 LTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAAD----SAAQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLP 197
            L GLL VIRMTD D N LALGSDLT LGLNL+S++ LY+TF GP+++ P++ EP +QLP CYYMQPP+LKT H SKF LETLFYIFYA+P D+LQAYAAQELY RDWR+H + K+W K+AT +D    + A  ++I+FD N WERR +         V   + GG + EEDVRVK P
Sbjct:   86 LLGLLSVIRMTDADRNRLALGSDLTVLGLNLNSNDNLYSTFGGPFSDKPATREPHYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQAYAAQELYTRDWRYHVESKVWFKQATPSDVPNGNVAAGQYIYFDINTWERRLYGN-------VNQNIAGGFLPEEDVRVKFP 255          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A7S2SSK7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSK7_9STRA)

HSP 1 Score: 210 bits (534), Expect = 6.340e-63
Identity = 110/181 (60.77%), Postives = 129/181 (71.27%), Query Frame = 0
Query:   25 LTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQP-PSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAAD-----SAAQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLPVA 199
            L GLL+VIRMTDPDLN LALGSDLTTLGLNL+SS+ LY+TF+ PWA+GPS  EPQFQ+P CYYMQ  P LK  H  KF LETLFYIFYAMP D+LQ YAA+ELY RDW++H DLKLW +RAT  D     + A  +F++FD N WE R FSG +       G    G M EE+V   +P A
Sbjct:  257 LLGLLKVIRMTDPDLNTLALGSDLTTLGLNLNSSKSLYSTFSSPWADGPSKSEPQFQIPACYYMQQTPPLKHAHLQKFQLETLFYIFYAMPKDLLQVYAARELYQRDWKYHGDLKLWFRRATQHDIPHLLANAPPQFVYFDLNTWECRLFSGNIH------GAFANGFMKEEEVVAAIPQA 431          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: B7FQW3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQW3_PHATC)

HSP 1 Score: 206 bits (524), Expect = 3.740e-61
Identity = 102/178 (57.30%), Postives = 133/178 (74.72%), Query Frame = 0
Query:   25 LTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAAD-----SAAQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLP 197
            L GLL VIRMTD D N LALGSDLT LGLNL S+E +Y+TF+ PW++  ++ EP +QLP CYYMQPP+LKT H SKF LETLFYIFYA+P D+LQAYAAQELY R+WR+H +LKLW KRA+ +D     S+   ++++FD N WERR F+G +  ++      T G ++E++V+VK P
Sbjct:  291 LLGLLGVIRMTDDDRNTLALGSDLTMLGLNLGSTEQIYSTFSSPWSDNVATKEPHYQLPVCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQAYAAQELYSREWRYHGELKLWFKRASPSDGVSSSSSGSPQYLYFDINSWERRLFNGSMNQNI------TSGFITEDEVQVKFP 462          
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Match: A0A7S2IE73_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IE73_9EUKA)

HSP 1 Score: 197 bits (501), Expect = 5.610e-61
Identity = 100/147 (68.03%), Postives = 117/147 (79.59%), Query Frame = 0
Query:   25 LTGLLRVIRMTDPDLNMLALGSDLTTLGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRAT---AADSAAQVRFIFFDHNVWERRGF 168
            L GLL VIRMTD DLN LALG+DLTTLGLNL+SSE LYATFA PWA+ P+  +P+F LPQCYYMQPP+LKT HFSKF LETLFYIFY MP D LQAYAA ELY RDWR+H DLKLW  +A    AAD+  + ++I+FD N W+++ F
Sbjct:   22 LMGLLSVIRMTDQDLNTLALGTDLTTLGLNLNSSECLYATFASPWADSPAQRDPEFSLPQCYYMQPPALKTGHFSKFQLETLFYIFYNMPRDTLQAYAATELYNRDWRYHKDLKLWFTKAARQGAADTQ-KGQYIYFDINEWKKKIF 167          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163138 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGQ9_9STRA5.390e-137100.00NOT2_3_5 domain-containing protein n=1 Tax=Tribone... [more]
A0A7S0C8Q4_9STRA2.330e-6864.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9W176_9STRA3.000e-6862.36Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2XLH6_9STRA5.820e-6865.34Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2EBZ5_TRICV9.860e-6862.92Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6U3ZWB8_9STRA3.600e-6562.79Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2PH42_9STRA4.810e-6459.32Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2SSK7_9STRA6.340e-6360.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7FQW3_PHATC3.740e-6157.30Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2IE73_9EUKA5.610e-6168.03Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038635CCR4-NOT complex subunit 2/3/5, N-terminal domain superfamilyGENE3D2.30.30.1020coord: 22..169
e-value: 1.1E-49
score: 170.5
IPR007282NOT2/NOT3/NOT5, C-terminalPFAMPF04153NOT2_3_5coord: 63..166
e-value: 2.9E-23
score: 82.4
IPR040168Not2/Not3/Not5PANTHERPTHR23326CCR4 NOT-RELATEDcoord: 23..165
NoneNo IPR availablePANTHERPTHR23326:SF3CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 2coord: 23..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:410226..413699 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163138mRNA_7504Tribonema minus UTEX_B_3156 mRNAContig_24 410226..413699 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|163138|e_gw1.24.16.1 ID=Trimin1|163138|e_gw1.24.16.1|Name=jgi.p|Trimin1|163138|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
MRQQRIAAAAADTTVSLCVTVICSLTGLLRVIRMTDPDLNMLALGSDLTT
LGLNLDSSEVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSK
FTLETLFYIFYAMPSDILQAYAAQELYLRDWRFHADLKLWLKRATAADSA
AQVRFIFFDHNVWERRGFSGPLPMSVAVGGGLTGGLMSEEDVRVKLPVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038635CCR4-NOT_su2/3/5_N_sf
IPR007282NOT2/3/5_C
IPR040168Not2/3/5