Trimin1|162804|e_gw1.22.192.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|162804
Unique NameTrimin1|162804|e_gw1.22.192.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length599
Homology
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BLAST of jgi.p|Trimin1|162804 vs. uniprot
Match: A0A835Z0N3_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N3_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.380e-75
Identity = 493/493 (100.00%), Postives = 493/493 (100.00%), Query Frame = 0 
Query:    1 MLSRPPLADCRVNKRWGWRRAMALVEDMEAAGVAARLEHFRSAVVACSKTKQXXXXXXXXXXXXXXXXXPDVQTMTXXXSSCPPQQADDALSXXXXXXXXXXXXXXXXXXXVLSICAQAGRWASTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGRVAEAEDALHEMAGGAALAXXXXXXXXXXXXXXXXXXXGQRVLDLFEEMVAAGVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAEGGALEPDRVTXXXXXXXXXXXXXXXXXXXXLDDMRQRGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQCFGDARLWGRAVQLIEEIKTAGAGMPDAVXXXXXXXXXXXXXXXXXXXXXXXDMIACGVE 493
            MLSRPPLADCRVNKRWGWRRAMALVEDMEAAGVAARLEHFRSAVVACSKTKQXXXXXXXXXXXXXXXXXPDVQTMTXXXSSCPPQQADDALSXXXXXXXXXXXXXXXXXXXVLSICAQAGRWASTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGRVAEAEDALHEMAGGAALAXXXXXXXXXXXXXXXXXXXGQRVLDLFEEMVAAGVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAEGGALEPDRVTXXXXXXXXXXXXXXXXXXXXLDDMRQRGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQCFGDARLWGRAVQLIEEIKTAGAGMPDAVXXXXXXXXXXXXXXXXXXXXXXXDMIACGVE
Sbjct:    1 MLSRPPLADCRVNKRWGWRRAMALVEDMEAAGVAARLEHFRSAVVACSKTKQXXXXXXXXXXXXXXXXXPDVQTMTXXXSSCPPQQADDALSXXXXXXXXXXXXXXXXXXXVLSICAQAGRWASTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGRVAEAEDALHEMAGGAALAXXXXXXXXXXXXXXXXXXXGQRVLDLFEEMVAAGVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAEGGALEPDRVTXXXXXXXXXXXXXXXXXXXXLDDMRQRGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQCFGDARLWGRAVQLIEEIKTAGAGMPDAVXXXXXXXXXXXXXXXXXXXXXXXDMIACGVE 493
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162804 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0N3_9STRA1.380e-75100.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 281..327
e-value: 1.8E-8
score: 34.5
coord: 459..508
e-value: 4.0E-12
score: 46.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 107..140
e-value: 1.6E-6
score: 25.9
coord: 144..175
e-value: 1.2E-4
score: 20.0
coord: 284..318
e-value: 5.1E-7
score: 27.5
coord: 214..246
e-value: 3.7E-8
score: 31.1
coord: 391..424
e-value: 6.9E-6
score: 23.9
coord: 568..593
e-value: 1.4E-4
score: 19.8
coord: 356..389
e-value: 1.7E-6
score: 25.9
coord: 462..496
e-value: 6.2E-9
score: 33.5
coord: 321..348
e-value: 0.0013
score: 16.8
coord: 497..528
e-value: 8.3E-8
score: 30.0
coord: 247..272
e-value: 9.5E-7
score: 26.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 377..437
e-value: 1.2E-11
score: 44.5
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 241..272
e-value: 3.1E-11
score: 42.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 568..594
e-value: 4.4E-5
score: 23.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 530..564
score: 8.801982
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 389..423
score: 10.424253
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 495..529
score: 12.342482
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..279
score: 10.687325
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 282..316
score: 11.980759
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 354..388
score: 11.213468
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 424..458
score: 8.845827
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 317..351
score: 8.834866
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 140..174
score: 10.55579
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 210..244
score: 11.070971
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 105..139
score: 11.794416
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 460..494
score: 12.309597
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 565..595
score: 9.700809
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 444..597
e-value: 5.1E-43
score: 149.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 192..326
e-value: 4.3E-33
score: 117.0
coord: 10..84
e-value: 5.8E-9
score: 37.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 85..191
e-value: 1.1E-24
score: 88.8
coord: 327..440
e-value: 1.1E-29
score: 105.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 462..592
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 105..344
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 80..185
e-value: 7.5E-8
score: 31.9
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 20..236
coord: 210..455
coord: 351..594

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:699312..707441 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162804mRNA_6393Tribonema minus UTEX_B_3156 mRNAContig_22 699312..707441 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|162804|e_gw1.22.192.1 ID=Trimin1|162804|e_gw1.22.192.1|Name=jgi.p|Trimin1|162804|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=599bp
MLSRPPLADCRVNKRWGWRRAMALVEDMEAAGVAARLEHFRSAVVACSKT
KQWRHALPLLARMRAAGAVPDVQTMTAAISSCPPQQADDALSLMQEMRSE
GLAPNEVTYNVVLSICAQAGRWASTATLLEEMRSEGHQPTPYQYNCAFAA
CERSQRWREAVALYRRMRADGLRPTALSYTHLVSVLERGKRRKQAVAVLE
EMLAESPRESVVNFNILMNACAKARHWVHAAALFAEMRAAGIAPDVVSYN
TLINAYARCGRVAEAEDALHEMAGGAALAAPDVVTYGTVMQACAASGQGQ
RVLDLFEEMVAAGVKPNVMAYRGCIIACEQRGRWEEALALFDRMCAEGGA
LEPDRVTYNSAIACCAHLRLWRRGVALLDDMRQRGVTPDQYSYNSAVAAC
VKARQTQQMAAVLARMREAGFSPDLVTYSNLIQCFGDARLWGRAVQLIEE
IKTAGAGMPDAVCYNGAINACAKCGEWEHAEQLVEDMIACGVEPDTITYN
SLLNAYAKKGEWAKALTALETMRERGITQSAMTFGAAIQACERAREWERA
VALLSKATAAGVPPTTFAYNFAMSACVHAGRLDRALELLEEMKGKVYM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long