prot_S-firma_M_contig9989.20966.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9989.20966.1
Unique Nameprot_S-firma_M_contig9989.20966.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length394
Homology
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BLAST of mRNA_S-firma_M_contig9989.20966.1 vs. uniprot
Match: A0A6H5KW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.800e-48
Identity = 122/176 (69.32%), Postives = 129/176 (73.30%), Query Frame = 0 
Query:    1 MDFPTAGGTAAAEAXXXXXXXXXXXXXRNPAAKLASITGALRRHGRNAGIVGG--GSEDDPAGSASTFCKEPATPHAWLCSRQPRTPLGFLPRFGRGLSGGAGSXXXXXXXXXXXXXXXXXKHSRGGSKEGSDPTNLRRHFTTVSDSEGASVAXXXXXXXXXXXXXSRGRGGSKAG 174
            MDFPTAGGTAA  A             RNPAAKLASITGALRRH R+AGI GG  GSEDD   SA+TFCKEPATPHAWLCSRQPRTPLGFLPRFGRG +  +G  XXXXXXXXXXXX     HSRGGSK+GSDPT+LRRHFTTVS SE    A  XXXX       +RGRGG KAG
Sbjct: 2426 MDFPTAGGTAA--AAEAAAGSGTGRAGRNPAAKLASITGALRRHSRSAGIGGGSAGSEDDSGSSAATFCKEPATPHAWLCSRQPRTPLGFLPRFGRGANATSGGGXXXXXXXXXXXXKG---HSRGGSKDGSDPTSLRRHFTTVSGSEEGEAAATXXXXAGSGLDRARGRGGGKAG 2596
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BLAST of mRNA_S-firma_M_contig9989.20966.1 vs. uniprot
Match: D8LBS8_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS8_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.210e-37
Identity = 110/202 (54.46%), Postives = 116/202 (57.43%), Query Frame = 0 
Query:    1 MDFPTAGGTAAAEAXXXXXXXXXXXXXRNPAAKLASITGALRRHGRNAGIVGGGSEDDP--AGSASTFCKEPATPHAWLCSRQPRTPLGFLPRFGRGLSGGAGSXXXXXXXXXXXXXXXXXK--------------------------HSRGGSKEGSDPTNLRRHFTTVSDSEGASVAXXXXXXXXXXXXXSRGRGGSKAG 174
            MDFPTAGGTAA  A             RNPAAKLASITGALRRH R+AGI G          GSA+TFCKEPATPHAWLCSRQPRTPLGFLPRFGRG +  +G   XXXXXX         K                          HSRGGSK GSDPT+LRRHFTTVS SE    A  XXXXX      +RG    KAG
Sbjct:  895 MDFPTAGGTAA--AAEAAAGSGAGRAGRNPAAKLASITGALRRHSRSAGIGGXXXXXXXXSGGSAATFCKEPATPHAWLCSRQPRTPLGFLPRFGRGANATSGGGRXXXXXXRCGGRGPGGKSXXXXXXXXXXXXXXXXXXGGAGGKGHSRGGSKFGSDPTSLRRHFTTVSSSEEGEAAATXXXXXGSGADRARGXXXXKAG 1094
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9989.20966.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW24_9PHAE6.800e-4869.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBS8_ECTSI1.210e-3754.46HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9989contigS-firma_M_contig9989:1629..3333 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9989.20966.1mRNA_S-firma_M_contig9989.20966.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9989 629..3723 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9989.20966.1 ID=prot_S-firma_M_contig9989.20966.1|Name=mRNA_S-firma_M_contig9989.20966.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=394bp
MDFPTAGGTAAAEAAAATGASGAGRAGRNPAAKLASITGALRRHGRNAGI
VGGGSEDDPAGSASTFCKEPATPHAWLCSRQPRTPLGFLPRFGRGLSGGA
GSGGGSGGSGGGGSGGGAGKHSRGGSKEGSDPTNLRRHFTTVSDSEGASV
AAAAAAAAGTGADDSRGRGGSKAGQDVSDGGGGAAAAAPGARARPPEHRR
HQQLVRTVVHSPHESPAEAPPPAAAVTRDRWEAVAPGRRCPSSPASGKAA
AGPLGSGSRPASSSRRPQQQQQQPQQPPQQPRRRRQRKEEEDGEEEVVEV
QVWRKKNLPRGPCRSSSRTRACCRSRGGCTLPASSYCWRCRRTPRRTAGP
GGWSWRRTTRSSSACRCCRRGRRRRCRGRRPRPSPRGRRAGTA*
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