mRNA_S-firma_M_contig951.20501.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig951.20501.1
Unique NamemRNA_S-firma_M_contig951.20501.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI)

HSP 1 Score: 462 bits (1190), Expect = 5.680e-158
Identity = 228/299 (76.25%), Postives = 250/299 (83.61%), Query Frame = 1
Query:    1 MDTVVDFLTQKWDYGPEVCLAAFALFHSAR----------------------------VRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYTVTGVPNPQAAAVAA-EKPKED 810
            M+  VDFLTQ W+YG EVCLAAFALFHSAR                            VRK+EKDSGK +FWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVP+VAVCWFVSNRAEG IFALINTP+MKQVIL+LSE+FRAN+MCG+VVLSNS+LKPGKHYPIALWGPILLGT+GGCGGLFLPLD+GL+GLK GAPWPLQSAFYGS FFNLFVYDPNVGPYLRDAA   L+GD LVV+G+A+VAGFLC  A+AQT++   FNPFTPVHNVVYTVTGVPNP+A AVA  EKPK D
Sbjct:    1 MENAVDFLTQNWEYGAEVCLAAFALFHSAREIKQACDALRLACAGSGALTFKQKAKILVRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWFVSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNVGPYLRDAAALFLDGD-LVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVYTVTGVPNPEAVAVATGEKPKAD 298          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA)

HSP 1 Score: 254 bits (649), Expect = 8.330e-77
Identity = 126/264 (47.73%), Postives = 167/264 (63.26%), Query Frame = 1
Query:    1 MDTVVDFLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYTVTGVPNPQAAAVAA 792
            +DT  DFL Q   Y PEVCL  +AL  +ARV+       K+++WA+SLV+T++M FGGGI+APFLLGKPPV+ +NDL+V  V   W V NR E  + AL+  P++ Q +  ++E+FRAN  C +V ++   +  GK+YPI  WGP+LLGTI GC G+FLP D+GL  +K G+PWPLQSAFYGS  F+L  +DP+V   L   AG     D      +A V  F  A A  QT  G  FNPF+P+H V Y ++GV  P A    A
Sbjct:    7 LDTAHDFLLQDLPYMPEVCLFIYALVGAARVKS---GPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALAPYAG-----DYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGANGAPA 262          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.470e-41
Identity = 94/250 (37.60%), Postives = 138/250 (55.20%), Query Frame = 1
Query:   19 FLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNV-GPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYTVTGVP 765
            FL  ++ Y  EVCL AF L  S RVR   + S     W   LV+ ++  F GG + P   G+ PV+FVNDL+VP+V + W++ +     +  L+ T   K +++ L EI+RA ++   V  + + + PG +YPIA+ GP+L+GT+ G  G F+P DRG+  L  G P  LQ+      F++L  +DP + G YLR      L   + +   KAL   F  A A    V G  +NPFTPVH ++Y V G+P
Sbjct:   21 FLLMQYPYEFEVCLFAFCLGASMRVRPSAQYS-----WLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYTR--VGGLLQTSPCKFLLVALFEIYRAASILKTVGQAATDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPENL---KALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGIP 260          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A7S2SKA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 8.630e-38
Identity = 89/260 (34.23%), Postives = 134/260 (51.54%), Query Frame = 1
Query:   10 VVDFLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSI--FALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVM-GETFNPFTPVHNVVYTVTGVPNPQAA 780
            VV  L  K  Y  E  L  F  + + + R+ E+   +  FW  SLV T +  +GGGI+ P +LG  P    ND  + +V   W+  +     +  + L N+ +++  +  + E  R N +    +++NS+L P  HYPI +WGPIL G I GC G F+    GL  ++    W +QS+FY +A++++ V DP VGP L          D LV +   + A  L A A+ Q    G  FNPF PVH+++Y +TG  NP  A
Sbjct:   59 VVQVLALKRPYSLEFLLWGFTTWMAYKFRRQERVQAERYFWLNSLVRTAIACYGGGIIVPMMLGMKPFPIENDAAITLVLFSWWTLHGTPAPLVTWVLDNSTVLRCFLFFIFEALRCNVVVKWCIIANSMLAPSVHYPIPIWGPILCGGISGCFGGFILGGVGL--VQSEVSWLIQSSFYAAAYYHITVNDPIVGPILGKLHISGAGSDPLVARMTCIFA--LGAVAVLQEAFFGAHFNPFAPVHHLLYKITGAHNPAHA 314          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A6H5JUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.360e-29
Identity = 88/290 (30.34%), Postives = 135/290 (46.55%), Query Frame = 1
Query:   31 KWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNV-GPYLRDAAGYILEG---DDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNV----VYTVTGVPNPQAAAVAAEKPKED*KTRYHFSSPRRGGVGEASRAR 876
            KW Y  E  L  F+L  SA V+   K +          V T M   G G++ P L+  PP+   NDL+V  + V + VS   +  +   I TP + + + +LS   R N +C +V  + +   P  +YPIAL+GPI++G   G GG  +P D+GL  + K  PW +Q  F  + F+++   D  + G  +R A G  LE    +D+    + +   F     + QT     FNPFTP H      +Y VTG+P     A+  E P+    T    +    G   E ++ +
Sbjct:   16 KWPYSSEFYL--FSLVTSACVKARGKSTKFEGLLLPMFVHTLMCTTGSGVVGPLLMRDPPLFLNNDLLVTCIMVFFLVSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHIVANDTYILGGMVRGALG--LENATREDI----RLIAVTFGVVVTVIQTYYAPKFNPFTPAHQATSPALYAVTGMPK---TAITIEVPRSTPSTDADKAKDNGGNGAEETKGK 294          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A7R9U3G1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3G1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.570e-24
Identity = 74/240 (30.83%), Postives = 114/240 (47.50%), Query Frame = 1
Query:   10 VVDFLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPN--VGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPF 723
            +V+ LT +      +C   F +F  AR     K       W ESL+ T++ AFGGG L P +LGKPPV   +D++  M  + W +++      +   N  L   + L    IF+A   C  V  +  VL     YPI L GPI+LG +G  GG+FLP D+GL  + KG     +     SAFF++ V D +  +G  LR   G +     ++        G+     + + ++  +F+PF
Sbjct:   24 LVELLTLQDATAKLLCAFCF-IFMGARAAAKAKSGS----WVESLIRTFLTAFGGGTLVPLILGKPPVFLDSDVLFCMTLLAWALTHLTPVGRWVEYNQALRLPLNLG-GYIFKAVKCCSTVNTAAKVLSASALYPIPLMGPIVLGVLGSTGGMFLPFDKGLAAVSKGLSVAFEIPLACSAFFHIIVNDQSGFLGTTLRQLTGPVTNETAVLAA-----VGWFAGTYLTKELLDSSFDPF 252          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: D7FML9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML9_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.730e-23
Identity = 70/226 (30.97%), Postives = 110/226 (48.67%), Query Frame = 1
Query:  205 PPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNV-GPYLRDAAGYILEG---DDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYTVTGVPNPQAAAVAAEKPKED*KTRYHFSSPRRGGVGEASR 870
            PP+   NDL+V  + V +  S   +  +   I TP + + + +LS   R N +C +V  + +   P  +YPIAL+GPI++G   G GG  +P D+GL  + K  PW +Q  F  + F+++   D  + G  +R A G  LE    +D+    + +   F     + QT     FNPFTP H  +YTVTG+P     A+  E P+    T    +    G   E ++
Sbjct:    4 PPLFLNNDLLVTCIMVFFLFSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHVVANDTYILGGMVRGALG--LENATREDI----RLIAVTFGVVVTVIQTYYAPKFNPFTPAHQALYTVTGMPK---TAITIEVPRSTPSTDADKAKDNGGNGAEEAK 220          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A7S1BM49_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BM49_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.490e-17
Identity = 63/216 (29.17%), Postives = 101/216 (46.76%), Query Frame = 1
Query:   55 CLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVM 702
            CL A+A  H  +V K        +F   SL +      GGGIL P  L   PV   +D+ +  + + + + +R             ++ ++++L E  RA  +C     +   +      P  L+GPI+ GT+ GCGG F+PL +GL+  + G P P ++A  G+A ++LFV        L D  G I    D   KG+ LVA F  + ++   +M
Sbjct:   56 CLLAYAFVHGVKVFKSVNPKASPVFKLLSLTLA---CTGGGILVPIFLNSIPVPLASDVYIVAILISFALHSRFPILRELFSKNIALQLILIVLYETTRAGVVCKFTKKAGETIL-ASWLPYPLFGPIMCGTVSGCGGAFMPLSKGLEPTRAGMPKPAKTALIGAAAYHLFV-----NTKLTD--GVI----DAPQKGQVLVASFFISVSLVDLLM 256          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A1E7EP48_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP48_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.590e-17
Identity = 68/212 (32.08%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   52 VCLAAFALFHSARV-RKMEKDSG--KHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVG-----PYLRDAAGYILEGDDLVVKGKALVA 663
            +C+  +   H  +V +K++ +S   K  F A  L+   +   GGGIL P  L   PV    D   P+      + +R+  S  + I   LM    ++  E  R   +   V L+ S + P + +   ++GPI+ GTIGGCGG FLP D+GL  +K G P P+ +AF G+ FF+LF +    G     P++ D    +    D   KGK +VA
Sbjct:   54 MCMIGYTFLHGCKVFKKIDGNSSNEKKKFSAYKLITMILACTGGGILVPIFLNTIPVTIAIDAY-PIA----ILQSRSVVSHLSAITNALM----VVFYETIRTYVVTLFVGLAASTIAPSQ-FSFPVFGPIICGTIGGCGGAFLPFDKGLAPIKDGLPPPVFTAFTGATFFHLFTHYTKNGNDTGIPFVDDVLDQLQI--DAPKKGKVIVA 253          
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A448Z417_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z417_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 8.680e-17
Identity = 64/204 (31.37%), Postives = 90/204 (44.12%), Query Frame = 1
Query:   52 VCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVA 663
            +C+  +   H  +V K  K      +    LV   M   GGGIL P  L   PV    D     + + + +          L  + + K V+++  E  RA  +     L+ S +     +   ++GPI+ GTIGGCGG FLPLD+GL  L  G P P+ SAF G+ FF+LF               Y  E  D   KGK +VA
Sbjct:   45 MCMIGYTFLHGCKVFKKFKPDAPFSY---KLVNLAMACTGGGILVPIFLNTVPVTLSIDAYPIAIMISYLLHTYIPSLREVLELSGIFKAVVILFYESIRAYVVTLFTGLAASTIA-ASQFSFPVFGPIICGTIGGCGGAFLPLDKGLAPLHDGLPAPVFSAFVGATFFHLFTQL------------YAEEVVDCKKKGKVIVA 232          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2H0_ECTSI5.680e-15876.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0I7_9STRA8.330e-7747.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CX56_9STRA2.470e-4137.60Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2SKA8_9STRA8.630e-3834.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JUV5_9PHAE8.360e-2930.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9U3G1_9STRA2.570e-2430.83Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D7FML9_ECTSI4.730e-2330.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1BM49_9STRA2.490e-1729.17Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1E7EP48_9STRA4.590e-1732.08Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448Z417_9STRA8.680e-1731.37Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig951contigS-firma_M_contig951:19120..23496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score462.2
Seed ortholog evalue1.6e-127
Seed eggNOG ortholog2880.D7G2H0
EggNOG OGs2BW3U@1,2SEWS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005940.1
Exons6
Model size1760
Cds size813
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828786.1236851-UTR-S-firma_M_contig951:19119..200661622828786.1236851-UTR-S-firma_M_contig951:19119..20066Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig951 19120..20066 -
1697105161.6796014-UTR-S-firma_M_contig951:19119..200661697105161.6796014-UTR-S-firma_M_contig951:19119..20066Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig951 19120..20066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828786.1416614-CDS-S-firma_M_contig951:20066..202891622828786.1416614-CDS-S-firma_M_contig951:20066..20289Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 20067..20289 -
1697105161.6915367-CDS-S-firma_M_contig951:20066..202891697105161.6915367-CDS-S-firma_M_contig951:20066..20289Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 20067..20289 -
1622828786.1537025-CDS-S-firma_M_contig951:20728..208201622828786.1537025-CDS-S-firma_M_contig951:20728..20820Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 20729..20820 -
1697105161.7029006-CDS-S-firma_M_contig951:20728..208201697105161.7029006-CDS-S-firma_M_contig951:20728..20820Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 20729..20820 -
1622828786.1683927-CDS-S-firma_M_contig951:21184..212831622828786.1683927-CDS-S-firma_M_contig951:21184..21283Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 21185..21283 -
1697105161.7120292-CDS-S-firma_M_contig951:21184..212831697105161.7120292-CDS-S-firma_M_contig951:21184..21283Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 21185..21283 -
1622828786.1814404-CDS-S-firma_M_contig951:21612..217681622828786.1814404-CDS-S-firma_M_contig951:21612..21768Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 21613..21768 -
1697105161.7211704-CDS-S-firma_M_contig951:21612..217681697105161.7211704-CDS-S-firma_M_contig951:21612..21768Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 21613..21768 -
1622828786.1970055-CDS-S-firma_M_contig951:22156..223091622828786.1970055-CDS-S-firma_M_contig951:22156..22309Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 22157..22309 -
1697105161.730313-CDS-S-firma_M_contig951:22156..223091697105161.730313-CDS-S-firma_M_contig951:22156..22309Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 22157..22309 -
1622828786.2111216-CDS-S-firma_M_contig951:23406..234961622828786.2111216-CDS-S-firma_M_contig951:23406..23496Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 23407..23496 -
1697105161.7413898-CDS-S-firma_M_contig951:23406..234961697105161.7413898-CDS-S-firma_M_contig951:23406..23496Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 23407..23496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig951.20501.1prot_S-firma_M_contig951.20501.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig951 20067..23496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig951.20501.1

>prot_S-firma_M_contig951.20501.1 ID=prot_S-firma_M_contig951.20501.1|Name=mRNA_S-firma_M_contig951.20501.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=271bp
MDTVVDFLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVM
TYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALI
NTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGT
IGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLR
DAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYT
VTGVPNPQAAAVAAEKPKED*
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mRNA from alignment at S-firma_M_contig951:19120..23496-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig951.20501.1 ID=mRNA_S-firma_M_contig951.20501.1|Name=mRNA_S-firma_M_contig951.20501.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=4377bp|location=Sequence derived from alignment at S-firma_M_contig951:19120..23496- (Sphaerotrichia firma Sfir_13m male)
ATGGACACCGTCGTAGACTTCTTGACGCAGAAGTGGGACTATGGGCCGGA GGTTTGCCTCGCGGCTTTCGCGCTGTTCCACTCCGCAAGGGTGAGTGGAG TGAAGGAACTGACGAAATGAAGCTGCCCCACACCGCATGAGTGCGTAGGC ATCAGGAGGCAAACGCACGGGACACCGCCAACACATGCGCTCGTGGAGTA CGGAAGTCGTGAAAGGGGGGCGGAAGAGGCGTCGGGTGTGGACCTGTTGT TAGACCAAAGGCCGATGCTCCGCCACCTCTCTTGGGGTCTTTGCAAGACC TGAGAGGCTTCGCACATTTAGTACGTACCCCCGAAGTTGCAAGCGCTCCT TGCCTTTGTAGACGCGTGCTGCTCGGTACAGCAATGCAACGCTTTCGTTG ATTTGGTTCGCTGGGATCAACTCATCTCACCCGGCGATATGGAAGGGGGG GGGAATTAGGTCTTTTGCTGGGAATATGGCGCAAGTTCCGCGCGGGAATA TTTGGGTGTTTTCTCTGTGCGTTGGGTGAATGTGCGCCTGAAACGTCCAC GCCGCAGGTTTCTCCGTTACTCGTCACCTGTCCGTCTACGAATTGACACC TGGTCGTTTCGGTGGACGGTGCAAACGATGGCATTGTAGTCCTGTCTGGA CATCCTAAGCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTTGTCGTTCGCACGATCGAGCCCTAGACGAAAAGCC TAGGTCGAACACTGCGCAAGTTCCTGAATGTTGCCCTATAATACTGTACA TTGTAGACGAAGTAGGTGATGCATGCAGCATAGCGTTAACGGCACCGTTG GGGCCGAGAGCCCACAACACAAGCGGTTAGTTACTTTCTCTATGGACACT CATTGCTTGGCCCTTCCTTGGCGGGTTTGGTGGAAATCGATGTCGCGATA CCGAAAACCACACACTCGCCCCGCAACACCCTGCAACAGCTTGATTGACG CCCGCTGGGATGATGAGATCAGCACGTGGAGCTTGACATGCACACGACCC ATGGCAGAGAGGCGAACGAGGCAGAGGTTGTGCCAAGATTGCTGTCAAGA ACTGAAAACGGTTCTACCCCGTCATGTATGCCTCGCCCCCGACCCCGATT GTGTGCCGTTCCGTCCTCTGGTCCGTCTTTCTTCCAGGTTAGGAAGATGG AGAAGGACAGCGGCAAGCACCTGTTCTGGGCGGAGTCTCTGGTGATGACC TACATGATGGCCTTCGGAGGCGGCATCTTGGCCCCCTTCCTGCTTGGCAA GCCTCCCGTCATGTTCGTCAACGACCTTATCGTGCCCATGGTAAGGATTC GTCGTGCGTGTGTACCGTGGATCGTATCGTACGCCCCCCCTCCCCCCCCC CCGGCCTTTTGTGGGCCAAACGTGAAATCTCACTGCGCCACATGGGAAAG AATGGCGCCACTTTCGGAGAAGAGTTTACACATTCGAAAGAACAAATGAA ATACCTCGTCGACAGCTTTACGAACGCGCATGGGTCGATGTGTTGGCAGC CCTGCTTCTTGCGGTGCGGGACGAGGGTCGCCGTTGTTTCGTTACCCTCC TTCACAGTCCCGTCCTGCCCGTCCTGTTGTTTTTCTGTGTGTAGTTGTCT CACTCCTCCCCTGTTTTGTTTGTCTCTTCTGCCTGCCTGCCTGCCTGCCT GCCTGTTGTTTTCTCTGAATATTCACAGGTTGCGGTCTGTTGGTTCGTCT CCAACAGGGCAGAAGGGTCTATCTTTGCTTTGATCAACACCCCCCTCATG AAGCAGGTCATCCTCATGCTCTCGGAGATCTTCCGCGCCAACGCCATGTG CGGTGTCGTCGTCCTTTCCAACTCCGTCCTCAAGGTGAGCTACGATAGCT ATTATAACAGCAGTGGTGGATTGGAAGTGTGTGCCATTTTGTGTCGATGT ATGTCAGCAACTGCAGAGGTTGCGGTTGCGGAGCCTTTCTTGGTGTCGTT TGTTTCATGAACCATTTTCGTGCGTTCATGTTATTCCTTTGACGGAGTTT TTTTTTTTTTTTGGTGCGGTCGGAAGCTTATGCTTTGGTTCATTTCGTCT ATTGTCGTTTTGGGTCTTGCGGCTTCACGTGTGTTTCGGCCTTGCTCCAT GTTCGTGTTCATCATACATACCCTCTACCTAAAACAACCCATGATCTCGT TTTCGCGTGCCAGCCGGGCAAGCACTACCCCATCGCGCTGTGGGGCCCCA TCCTTCTCGGGACGATCGGCGGCTGCGGCGGGCTCTTCCTGCCTCTAGAC CGGGGTCTGCAGGCAAGCTAACACGACAACACGACGTGTTAATGTTGTTG CTGATTGTTCAGCTCGTGCAGCGGCAGCAGCGTCTGGATCCAACCAAAGG CGCTGCTGCTGCTGCTGCACATCCGTAGCTTGCTTGGTCCACAAGCGCCT TTGTGTGGGCAGCATGCAGTCTCGAGGCGACTCGTTCGAGAGCGCTCTTG GGTGCCGAAGCGCGTTTCCGTTTCACCGGGCTAAATTACGGTTAGAGTTC GATCGTGGTGCTTTCGTTGCCTCTGCTGTCGATGGTACATGCAGTCAGCT CGCTTTCGCGCTCGGTCGCCAGACAGATGGCACGTTCAGCTAACTTTCGT TTCGTTTCGTGTCTTGTTTCGTGCAGGGCTTGAAGAAGGGAGCTCCCTGG CCTCTTCAGTCCGCCTTCTACGGCTCTGCCTTCTTCAACCTGTTCGTCTA CGACCCCAACGTCGGCCCGTGAGTATTGAAGTCGTCTGAGTCGTCCTGAG TGTTCGTTCGGTACCTGCCTTCTCGGCTTGCCCCATCTCTTCGGTTTCCG CGCTCACGACACAACAGGCAGTTACCGTAGTTCTTTGTGTGCACGCCTCT TTGTGTGTGGTTGTATCAAGGCTCTGGATTTGCACCGATGGTCTGGGTGT ATCGTGGAGGGCGCGCGGTGTGGCTTGTTGATTGGACCGGCAATCGCGTG GGTGACTGGTCATTGCACCCTTTTCCTCCCTCCCTCCCTCCCTCCCTCCC CCATCCCGAAAGATGGCCTGATTGGTCAACGATCCGGGAGACGCGGAAAA GGCAATCAGCGAGTTTGCGACTGAGTTCCCCCCTGGGCCTCCCCAAAAAA TCTAACCCTACAACCTGTTCCCTACCGCCACCGCCCCCAATGCCTGAAAA ACAACAGATACCTGCGCGATGCGGCCGGCTACATCCTGGAGGGCGACGAC CTCGTGGTCAAGGGCAAGGCGCTCGTGGCGGGGTTCTTGTGCGCGTGCGC GATCGCGCAGACCGTCATGGGCGAGACGTTCAACCCCTTCACCCCTGTGC ACAACGTCGTGTACACGGTGACCGGGGTGCCGAACCCACAGGCCGCTGCC GTCGCCGCCGAAAAGCCCAAGGAGGACTAAAAAACGCGCTATCATTTCAG CTCGCCGCGGCGGGGTGGGGTTGGCGAAGCAAGCCGTGCCCGCCACATCT ACTAATCGGCCTGCCTGCCGGCCAGGCTACCGGAAGTCTTGTCGAAAACT CTGCTTTAAGAAAGAGCGGGGGAGGGAAAGGAGATAGGGGGGCTGGGGGG CCCGCAGTGTGGGTTTTACGTTTGTTTCTTTTGCATAGAGAAAAGGCGGA TAGCTGTTTTTATGTTTTGTGTCGAGATTGTAGATTGGAGGACGGAGTTT TTCGTGGCTGCCACCGTGACGTCCAGTATTACCCGGACAACGTTGAAAGG TCGACAACCTGCTGTGGGTCCATCCAGAAAGACGGTGTGCAGCAATCCCT GTCTTAGCGCACGGCTGGCCCGTCGCCATTGAACTCGTGCGCGGATAGGA TGACCGTGAGGGTCGTGCAAGTTTTTTTCTGTCGCAGATGCCTCAAAGCG TTACCTGTAGAGCTCGTGCCGTGTTAGTCAGCAAGCTCGGGGTCTACGTC AGCACAGAATAGGTTCTGAGATTGCAAGCTTGGACCGGCAGGGAGGGGCT TGAGGACTCGCGAAGGGTACGGCAGTATCCGGAAACGCGTTGCAAGCAAC TCTAGATTAGCTTGCAGCTACATCCCAGCACGGGGATGTGTCGGCCCATT ATTTTTGCATTTCGTTCAACGCTCCTGTGGGCAGTTTGTGGGTCATCTCG GGTCACTTGTGCCAACCAGCCCTTGCTTGCCCAAGGAATTTAAATTAGAA ACGGGGGTGCGTCTCGATAGGCTAGTTTCGCATCGAACCACACCCGTAAA GACATCCGAAAAGAAACCTTTCTTCTTCACGGTGCATTTATTTTCCACGC TTCCGCCAACCGAAGGGAGGGGCAACACATGAGGGAGGGAGCGAGAATCT CAGCATGGCTGGTTTTCACTTGTCGAT
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Coding sequence (CDS) from alignment at S-firma_M_contig951:19120..23496-

>mRNA_S-firma_M_contig951.20501.1 ID=mRNA_S-firma_M_contig951.20501.1|Name=mRNA_S-firma_M_contig951.20501.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1626bp|location=Sequence derived from alignment at S-firma_M_contig951:19120..23496- (Sphaerotrichia firma Sfir_13m male)
ATGGACACCGTCGTAGACTTCTTGACGCAGAAGTGGGACTATGGGCCGGA
GGTTTGCCTCGCGGCTTTCGCGCTGTTCCACTCCGCAAGGATGGACACCG
TCGTAGACTTCTTGACGCAGAAGTGGGACTATGGGCCGGAGGTTTGCCTC
GCGGCTTTCGCGCTGTTCCACTCCGCAAGGGTTAGGAAGATGGAGAAGGA
CAGCGGCAAGCACCTGTTCTGGGCGGAGTCTCTGGTGATGACCTACATGA
TGGCCTTCGGAGGCGGCATCTTGGCCCCCTTCCTGCTTGGCAAGCCTCCC
GTCATGTTCGTCAACGACCTTATCGTGCCCATGGTTAGGAAGATGGAGAA
GGACAGCGGCAAGCACCTGTTCTGGGCGGAGTCTCTGGTGATGACCTACA
TGATGGCCTTCGGAGGCGGCATCTTGGCCCCCTTCCTGCTTGGCAAGCCT
CCCGTCATGTTCGTCAACGACCTTATCGTGCCCATGGTTGCGGTCTGTTG
GTTCGTCTCCAACAGGGCAGAAGGGTCTATCTTTGCTTTGATCAACACCC
CCCTCATGAAGCAGGTCATCCTCATGCTCTCGGAGATCTTCCGCGCCAAC
GCCATGTGCGGTGTCGTCGTCCTTTCCAACTCCGTCCTCAAGGTTGCGGT
CTGTTGGTTCGTCTCCAACAGGGCAGAAGGGTCTATCTTTGCTTTGATCA
ACACCCCCCTCATGAAGCAGGTCATCCTCATGCTCTCGGAGATCTTCCGC
GCCAACGCCATGTGCGGTGTCGTCGTCCTTTCCAACTCCGTCCTCAAGCC
GGGCAAGCACTACCCCATCGCGCTGTGGGGCCCCATCCTTCTCGGGACGA
TCGGCGGCTGCGGCGGGCTCTTCCTGCCTCTAGACCGGGGTCTGCAGCCG
GGCAAGCACTACCCCATCGCGCTGTGGGGCCCCATCCTTCTCGGGACGAT
CGGCGGCTGCGGCGGGCTCTTCCTGCCTCTAGACCGGGGTCTGCAGGGCT
TGAAGAAGGGAGCTCCCTGGCCTCTTCAGTCCGCCTTCTACGGCTCTGCC
TTCTTCAACCTGTTCGTCTACGACCCCAACGTCGGCCCGGCTTGAAGAAG
GGAGCTCCCTGGCCTCTTCAGTCCGCCTTCTACGGCTCTGCCTTCTTCAA
CCTGTTCGTCTACGACCCCAACGTCGGCCCATACCTGCGCGATGCGGCCG
GCTACATCCTGGAGGGCGACGACCTCGTGGTCAAGGGCAAGGCGCTCGTG
GCGGGGTTCTTGTGCGCGTGCGCGATCGCGCAGACCGTCATGGGCGAGAC
GTTCAACCCCTTCACCCCTGTGCACAACGTCGTGTACACGGTGACCGGGG
TGCCGAACCCACAGGCCGCTGCCGTCGCCGCCGAAAAGCCCAAGGAGGAC
TAAATACCTGCGCGATGCGGCCGGCTACATCCTGGAGGGCGACGACCTCG
TGGTCAAGGGCAAGGCGCTCGTGGCGGGGTTCTTGTGCGCGTGCGCGATC
GCGCAGACCGTCATGGGCGAGACGTTCAACCCCTTCACCCCTGTGCACAA
CGTCGTGTACACGGTGACCGGGGTGCCGAACCCACAGGCCGCTGCCGTCG
CCGCCGAAAAGCCCAAGGAGGACTAA
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