mRNA_S-firma_M_contig951.20501.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI) HSP 1 Score: 462 bits (1190), Expect = 5.680e-158 Identity = 228/299 (76.25%), Postives = 250/299 (83.61%), Query Frame = 1
Query: 1 MDTVVDFLTQKWDYGPEVCLAAFALFHSAR----------------------------VRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYTVTGVPNPQAAAVAA-EKPKED 810
M+ VDFLTQ W+YG EVCLAAFALFHSAR VRK+EKDSGK +FWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVP+VAVCWFVSNRAEG IFALINTP+MKQVIL+LSE+FRAN+MCG+VVLSNS+LKPGKHYPIALWGPILLGT+GGCGGLFLPLD+GL+GLK GAPWPLQSAFYGS FFNLFVYDPNVGPYLRDAA L+GD LVV+G+A+VAGFLC A+AQT++ FNPFTPVHNVVYTVTGVPNP+A AVA EKPK D
Sbjct: 1 MENAVDFLTQNWEYGAEVCLAAFALFHSAREIKQACDALRLACAGSGALTFKQKAKILVRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWFVSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNVGPYLRDAAALFLDGD-LVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVYTVTGVPNPEAVAVATGEKPKAD 298
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA) HSP 1 Score: 254 bits (649), Expect = 8.330e-77 Identity = 126/264 (47.73%), Postives = 167/264 (63.26%), Query Frame = 1
Query: 1 MDTVVDFLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYTVTGVPNPQAAAVAA 792
+DT DFL Q Y PEVCL +AL +ARV+ K+++WA+SLV+T++M FGGGI+APFLLGKPPV+ +NDL+V V W V NR E + AL+ P++ Q + ++E+FRAN C +V ++ + GK+YPI WGP+LLGTI GC G+FLP D+GL +K G+PWPLQSAFYGS F+L +DP+V L AG D +A V F A A QT G FNPF+P+H V Y ++GV P A A
Sbjct: 7 LDTAHDFLLQDLPYMPEVCLFIYALVGAARVKS---GPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALAPYAG-----DYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGANGAPA 262
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA) HSP 1 Score: 165 bits (418), Expect = 2.470e-41 Identity = 94/250 (37.60%), Postives = 138/250 (55.20%), Query Frame = 1
Query: 19 FLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNV-GPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYTVTGVP 765
FL ++ Y EVCL AF L S RVR + S W LV+ ++ F GG + P G+ PV+FVNDL+VP+V + W++ + + L+ T K +++ L EI+RA ++ V + + + PG +YPIA+ GP+L+GT+ G G F+P DRG+ L G P LQ+ F++L +DP + G YLR L + + KAL F A A V G +NPFTPVH ++Y V G+P
Sbjct: 21 FLLMQYPYEFEVCLFAFCLGASMRVRPSAQYS-----WLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYTR--VGGLLQTSPCKFLLVALFEIYRAASILKTVGQAATDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPENL---KALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGIP 260
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A7S2SKA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA8_9STRA) HSP 1 Score: 152 bits (384), Expect = 8.630e-38 Identity = 89/260 (34.23%), Postives = 134/260 (51.54%), Query Frame = 1
Query: 10 VVDFLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSI--FALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVM-GETFNPFTPVHNVVYTVTGVPNPQAA 780
VV L K Y E L F + + + R+ E+ + FW SLV T + +GGGI+ P +LG P ND + +V W+ + + + L N+ +++ + + E R N + +++NS+L P HYPI +WGPIL G I GC G F+ GL ++ W +QS+FY +A++++ V DP VGP L D LV + + A L A A+ Q G FNPF PVH+++Y +TG NP A
Sbjct: 59 VVQVLALKRPYSLEFLLWGFTTWMAYKFRRQERVQAERYFWLNSLVRTAIACYGGGIIVPMMLGMKPFPIENDAAITLVLFSWWTLHGTPAPLVTWVLDNSTVLRCFLFFIFEALRCNVVVKWCIIANSMLAPSVHYPIPIWGPILCGGISGCFGGFILGGVGL--VQSEVSWLIQSSFYAAAYYHITVNDPIVGPILGKLHISGAGSDPLVARMTCIFA--LGAVAVLQEAFFGAHFNPFAPVHHLLYKITGAHNPAHA 314
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A6H5JUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV5_9PHAE) HSP 1 Score: 129 bits (324), Expect = 8.360e-29 Identity = 88/290 (30.34%), Postives = 135/290 (46.55%), Query Frame = 1
Query: 31 KWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNV-GPYLRDAAGYILEG---DDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNV----VYTVTGVPNPQAAAVAAEKPKED*KTRYHFSSPRRGGVGEASRAR 876
KW Y E L F+L SA V+ K + V T M G G++ P L+ PP+ NDL+V + V + VS + + I TP + + + +LS R N +C +V + + P +YPIAL+GPI++G G GG +P D+GL + K PW +Q F + F+++ D + G +R A G LE +D+ + + F + QT FNPFTP H +Y VTG+P A+ E P+ T + G E ++ +
Sbjct: 16 KWPYSSEFYL--FSLVTSACVKARGKSTKFEGLLLPMFVHTLMCTTGSGVVGPLLMRDPPLFLNNDLLVTCIMVFFLVSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHIVANDTYILGGMVRGALG--LENATREDI----RLIAVTFGVVVTVIQTYYAPKFNPFTPAHQATSPALYAVTGMPK---TAITIEVPRSTPSTDADKAKDNGGNGAEETKGK 294
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A7R9U3G1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3G1_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.570e-24 Identity = 74/240 (30.83%), Postives = 114/240 (47.50%), Query Frame = 1
Query: 10 VVDFLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPN--VGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVMGETFNPF 723
+V+ LT + +C F +F AR K W ESL+ T++ AFGGG L P +LGKPPV +D++ M + W +++ + N L + L IF+A C V + VL YPI L GPI+LG +G GG+FLP D+GL + KG + SAFF++ V D + +G LR G + ++ G+ + + ++ +F+PF
Sbjct: 24 LVELLTLQDATAKLLCAFCF-IFMGARAAAKAKSGS----WVESLIRTFLTAFGGGTLVPLILGKPPVFLDSDVLFCMTLLAWALTHLTPVGRWVEYNQALRLPLNLG-GYIFKAVKCCSTVNTAAKVLSASALYPIPLMGPIVLGVLGSTGGMFLPFDKGLAAVSKGLSVAFEIPLACSAFFHIIVNDQSGFLGTTLRQLTGPVTNETAVLAA-----VGWFAGTYLTKELLDSSFDPF 252
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: D7FML9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML9_ECTSI) HSP 1 Score: 112 bits (280), Expect = 4.730e-23 Identity = 70/226 (30.97%), Postives = 110/226 (48.67%), Query Frame = 1
Query: 205 PPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNV-GPYLRDAAGYILEG---DDLVVKGKALVAGFLCACAIAQTVMGETFNPFTPVHNVVYTVTGVPNPQAAAVAAEKPKED*KTRYHFSSPRRGGVGEASR 870
PP+ NDL+V + V + S + + I TP + + + +LS R N +C +V + + P +YPIAL+GPI++G G GG +P D+GL + K PW +Q F + F+++ D + G +R A G LE +D+ + + F + QT FNPFTP H +YTVTG+P A+ E P+ T + G E ++
Sbjct: 4 PPLFLNNDLLVTCIMVFFLFSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHVVANDTYILGGMVRGALG--LENATREDI----RLIAVTFGVVVTVIQTYYAPKFNPFTPAHQALYTVTGMPK---TAITIEVPRSTPSTDADKAKDNGGNGAEEAK 220
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A7S1BM49_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BM49_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.490e-17 Identity = 63/216 (29.17%), Postives = 101/216 (46.76%), Query Frame = 1
Query: 55 CLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVAGFLCACAIAQTVM 702
CL A+A H +V K +F SL + GGGIL P L PV +D+ + + + + + +R ++ ++++L E RA +C + + P L+GPI+ GT+ GCGG F+PL +GL+ + G P P ++A G+A ++LFV L D G I D KG+ LVA F + ++ +M
Sbjct: 56 CLLAYAFVHGVKVFKSVNPKASPVFKLLSLTLA---CTGGGILVPIFLNSIPVPLASDVYIVAILISFALHSRFPILRELFSKNIALQLILIVLYETTRAGVVCKFTKKAGETIL-ASWLPYPLFGPIMCGTVSGCGGAFMPLSKGLEPTRAGMPKPAKTALIGAAAYHLFV-----NTKLTD--GVI----DAPQKGQVLVASFFISVSLVDLLM 256
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A1E7EP48_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP48_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.590e-17 Identity = 68/212 (32.08%), Postives = 104/212 (49.06%), Query Frame = 1
Query: 52 VCLAAFALFHSARV-RKMEKDSG--KHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVG-----PYLRDAAGYILEGDDLVVKGKALVA 663
+C+ + H +V +K++ +S K F A L+ + GGGIL P L PV D P+ + +R+ S + I LM ++ E R + V L+ S + P + + ++GPI+ GTIGGCGG FLP D+GL +K G P P+ +AF G+ FF+LF + G P++ D + D KGK +VA
Sbjct: 54 MCMIGYTFLHGCKVFKKIDGNSSNEKKKFSAYKLITMILACTGGGILVPIFLNTIPVTIAIDAY-PIA----ILQSRSVVSHLSAITNALM----VVFYETIRTYVVTLFVGLAASTIAPSQ-FSFPVFGPIICGTIGGCGGAFLPFDKGLAPIKDGLPPPVFTAFTGATFFHLFTHYTKNGNDTGIPFVDDVLDQLQI--DAPKKGKVIVA 253
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Match: A0A448Z417_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z417_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 8.680e-17 Identity = 64/204 (31.37%), Postives = 90/204 (44.12%), Query Frame = 1
Query: 52 VCLAAFALFHSARVRKMEKDSGKHLFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPMVAVCWFVSNRAEGSIFALINTPLMKQVILMLSEIFRANAMCGVVVLSNSVLKPGKHYPIALWGPILLGTIGGCGGLFLPLDRGLQGLKKGAPWPLQSAFYGSAFFNLFVYDPNVGPYLRDAAGYILEGDDLVVKGKALVA 663
+C+ + H +V K K + LV M GGGIL P L PV D + + + + L + + K V+++ E RA + L+ S + + ++GPI+ GTIGGCGG FLPLD+GL L G P P+ SAF G+ FF+LF Y E D KGK +VA
Sbjct: 45 MCMIGYTFLHGCKVFKKFKPDAPFSY---KLVNLAMACTGGGILVPIFLNTVPVTLSIDAYPIAIMISYLLHTYIPSLREVLELSGIFKAVVILFYESIRAYVVTLFTGLAASTIA-ASQFSFPVFGPIICGTIGGCGGAFLPLDKGLAPLHDGLPAPVFSAFVGATFFHLFTQL------------YAEEVVDCKKKGKVIVA 232 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig951.20501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig951.20501.1 >prot_S-firma_M_contig951.20501.1 ID=prot_S-firma_M_contig951.20501.1|Name=mRNA_S-firma_M_contig951.20501.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=271bp MDTVVDFLTQKWDYGPEVCLAAFALFHSARVRKMEKDSGKHLFWAESLVMback to top mRNA from alignment at S-firma_M_contig951:19120..23496- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig951.20501.1 ID=mRNA_S-firma_M_contig951.20501.1|Name=mRNA_S-firma_M_contig951.20501.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=4377bp|location=Sequence derived from alignment at S-firma_M_contig951:19120..23496- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig951:19120..23496- >mRNA_S-firma_M_contig951.20501.1 ID=mRNA_S-firma_M_contig951.20501.1|Name=mRNA_S-firma_M_contig951.20501.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1626bp|location=Sequence derived from alignment at S-firma_M_contig951:19120..23496- (Sphaerotrichia firma Sfir_13m male)back to top |