mRNA_S-firma_M_contig9403.20391.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9403.20391.1
Unique NamemRNA_S-firma_M_contig9403.20391.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9403.20391.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.490e-15
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   13 EAEPETNGAAXXXXXXXXXXXXXXXXXXXXXXXXXMSHEEQQKADVEGKIFLGGLTWQTTEEMLKTHFGK 222
            EAE ETNG  XXXXXXXXXXXXXXXXXXXXX    +SHEEQQKADVEGKIFLGGLTWQTTE+MLKTHFGK
Sbjct:   14 EAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGK 83
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9403.20391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQT7_ECTSI4.490e-1587.14RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9403contigS-firma_M_contig9403:1591..2319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D7FQT7
Preferred nameHNRNPA1
KEGG rclassRC00302
KEGG koko:K12235,ko:K12741,ko:K14411
KEGG ReactionR00589
KEGG Pathwayko00260,ko01100,ko03015,ko03040,map00260,map01100,map03015,map03040
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009791,GO:0009987,GO:0010228,GO:0010467,GO:0016070,GO:0016071,GO:0022414,GO:0030154,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034046,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0047484,GO:0048468,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050789,GO:0061458,GO:0065007,GO:0070013,GO:0070717,GO:0071704,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901000,GO:1901360,GO:1901363,GO:1990904,GO:2000070
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
EC5.1.1.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size223
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828774.0131075-CDS-S-firma_M_contig9403:1590..17291622828774.0131075-CDS-S-firma_M_contig9403:1590..1729Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9403 1591..1729 +
1697105154.3314748-CDS-S-firma_M_contig9403:1590..17291697105154.3314748-CDS-S-firma_M_contig9403:1590..1729Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9403 1591..1729 +
1622828774.0265698-CDS-S-firma_M_contig9403:2236..23191622828774.0265698-CDS-S-firma_M_contig9403:2236..2319Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9403 2237..2319 +
1697105154.3466153-CDS-S-firma_M_contig9403:2236..23191697105154.3466153-CDS-S-firma_M_contig9403:2236..2319Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9403 2237..2319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9403.20391.1prot_S-firma_M_contig9403.20391.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9403 1591..2319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9403.20391.1

>prot_S-firma_M_contig9403.20391.1 ID=prot_S-firma_M_contig9403.20391.1|Name=mRNA_S-firma_M_contig9403.20391.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=74bp
MLQTEAEPETNGAAETNGAAAATPAADGEAATEGEKAKEMSHEEQQKADV
EGKIFLGGLTWQTTEEMLKTHFGK
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mRNA from alignment at S-firma_M_contig9403:1591..2319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9403.20391.1 ID=mRNA_S-firma_M_contig9403.20391.1|Name=mRNA_S-firma_M_contig9403.20391.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=729bp|location=Sequence derived from alignment at S-firma_M_contig9403:1591..2319+ (Sphaerotrichia firma Sfir_13m male)
ATGTTGCAGACTGAAGCCGAGCCGGAAACGAACGGCGCCGCCGAAACGAA
CGGCGCCGCCGCGGCCACCCCAGCTGCGGACGGTGAGGCCGCCACCGAAG
GTGAAAAGGCCAAGGAGATGTCGCACGAAGAACAGCAGAGTGAGTATTGA
CCATGACGATACTGAACACGCCCACCCAAATAATGTGGAAACAAATTTAA
AGGAGCTCCCGTGTCGAGCCAAGGCGTCACGAGATCTCATCACGTGTGTA
AAAATGTGTGGTGAAATAAATCATTACGAGTAAACAGGTCGCCGACTGCA
CGCAAAAGCGGGCACGGCGATGTGGAACGTGGTGCGTTGCATTATTTCTG
TGTGTGTATTGGAGGGCTGCCCCCCCGAAATGTGTCCCCACGATCGTACC
TGCGAGTGGTGTGCACTGCTGTGGAGCAGCCGCCGGAGGTAAATGCGCAC
CCGAGGGTGGCAAGGATTCGTCGGGGTTCACTGAAACACTGCTGTTTGGG
TTTTTTCATTTGGCAAATTTCTCAACGTTTTTAACGAGCAGTCCGACGAA
ACTAGCTCTGAGTGGTTGCGAAATGAGGTGTTTTTGAAATTGGTCCCGTT
ATTTGTGGTTTTATCTGTTGGCGACTCTCACTTGATCAAACTCCAGAGGC
GGACGTTGAGGGCAAGATTTTTCTGGGTGGGCTGACGTGGCAGACGACGG
AAGAAATGCTCAAGACGCACTTCGGGAAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9403:1591..2319+

>mRNA_S-firma_M_contig9403.20391.1 ID=mRNA_S-firma_M_contig9403.20391.1|Name=mRNA_S-firma_M_contig9403.20391.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=444bp|location=Sequence derived from alignment at S-firma_M_contig9403:1591..2319+ (Sphaerotrichia firma Sfir_13m male)
ATGTTGCAGACTGAAGCCGAGCCGGAAACGAACGGCGCCGCCGAAACGAA
CGGCGCCGCCGCGGCCACCCCAGCTGCGGACGGTGAGGCCGCCACCGAAG
GTGAAAAGGCCAAGGAGATGTCGCACGAAGAACAGCAGAATGTTGCAGAC
TGAAGCCGAGCCGGAAACGAACGGCGCCGCCGAAACGAACGGCGCCGCCG
CGGCCACCCCAGCTGCGGACGGTGAGGCCGCCACCGAAGGTGAAAAGGCC
AAGGAGATGTCGCACGAAGAACAGCAGAAGGCGGACGTTGAGGGCAAGAT
TTTTCTGGGTGGGCTGACGTGGCAGACGACGGAAGAAATGCTCAAGACGC
ACTTCGGGAAGAGGCGGACGTTGAGGGCAAGATTTTTCTGGGTGGGCTGA
CGTGGCAGACGACGGAAGAAATGCTCAAGACGCACTTCGGGAAG
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