prot_S-firma_M_contig9401.20388.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_M_contig9401.20388.1
Unique Name	prot_S-firma_M_contig9401.20388.1
Type	polypeptide
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length	260

Homology

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 3.960e-95
Identity = 198/246 (80.49%), Postives = 202/246 (82.11%), Query Frame = 0

Query:   19 MGGVQGVAGVNGQVPQQMAPQQGIMGQGXXXXXXXXXXXXMGGQXXXXXXXXXXXXXXXXXXXX--MGGGAMSTMGMGDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQLQSQNTGGGMQRHGGMAHAMGGXXXXXXIGA--DGLAMPAVHTGVIRMRGLPFSATKQDVINFFQG 260
            MGGVQGV GVNGQVPQQMAPQQGIM QGXXXXXXXXXXXX    XXXXX    XXXXXX       MGGGAMSTM MGDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTR DGRGAGEAIVVL N +EMQMALSRDKQHMGRR     YIEIFQSKRMDYYSA+VGQLQSQN GG MQR          XXXXXX     DG+AMP VHTGVIRMRGLPFSATKQDV+NFFQG
Sbjct:    1 MGGVQGVGGVNGQVPQQMAPQQGIMSQGXXXXXXXXXXXXXXXXXXXXXGGVGXXXXXXNVQGAGMMGGGAMSTMSMGDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQHMGRR-----YIEIFQSKRMDYYSAVVGQLQSQNMGG-MQRQXXXXXXXXXXXXXXXXXXXPDGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQG 240

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.370e-57
Identity = 107/178 (60.11%), Postives = 122/178 (68.54%), Query Frame = 0

Query:   83 MGGGAMSTMGMGDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQLQSQNTGGGMQRHGGMAHAMGGXXXXXXIGADGLAMPAVHTGVIRMRGLPFSATKQDVINFFQG 260
            M GGA+   G    +LE+VLGPFPCVRLRG+PFEAT+DDVLRFFQGL  +DVVM+ RGDGRGAGEA+V+ +NH+++ MALSRDKQHMGRR     YIEIFQSKR DYY A      SQ +G                       A G A  A HTGVIRMRGLPFSATK DV+NFFQG
Sbjct:   13 MAGGAVPMGGGRADALEEVLGPFPCVRLRGMPFEATVDDVLRFFQGLTVVDVVMILRGDGRGAGEALVLFANHMDLNMALSRDKQHMGRR-----YIEIFQSKRADYYHA------SQGSGSAA--------------------ATGQAGTAEHTGVIRMRGLPFSATKADVVNFFQG 159

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: A0A7S2V6E5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.180e-38
Identity = 74/120 (61.67%), Postives = 87/120 (72.50%), Query Frame = 0

Query:   98 LEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQLQSQNTGGGMQRHGGMAHAMG 217
            LED+LGPFPCVR+RGLPFEAT++DV+ FFQGLV LDVV+  RGDGRG+GEA VV SN ++ QMAL RD+Q+MGRR     YIE+FQ+KR DYY AI         GG   R GGM    G
Sbjct:   94 LEDILGPFPCVRIRGLPFEATMEDVIMFFQGLVVLDVVLAVRGDGRGSGEAFVVFSNPMDCQMALQRDRQNMGRR-----YIEVFQAKRGDYYQAISAAAPLPTAGG---RPGGMGGYQG 205

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: A0A7S3BYF2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BYF2_9VIRI)

HSP 1 Score: 129 bits (324), Expect = 1.280e-32
Identity = 81/160 (50.62%), Postives = 99/160 (61.88%), Query Frame = 0

Query:  104 PFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQLQSQNTGGGMQRH--GGMAHAMGGXXXXXXIGAD--GLAMP-AVHTGVIRMRGLPFSATKQDVINFF 258
            PFP VRLRGLP++AT +DV  FF GL  +DVVM+ RG  R  GEA V+L N V+ + AL R +Q+MGRR     YIE+F SK+ DYYSA    L    +GGG   H  G  +HA  G       G    G   P A HTGVI+MRGLPFS TKQ+++ FF
Sbjct:   21 PFPVVRLRGLPYDATENDVAAFFSGLDVVDVVMLWRGQ-RPTGEAFVLLPNAVQAEFALQRSRQNMGRR-----YIEVFASKKSDYYSAAATALSM--SGGGFDGHALGEHSHAHAGPRAGAGRGGGMVGQGRPEAEHTGVIKMRGLPFSTTKQEILQFF 172

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: A0A7S4T0I6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0I6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.500e-32
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 0

Query:   98 LEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRG--DGRGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQLQSQN 201
            LE VLGPFPC RLRGLPFEA+I+DV+ FFQGLV LD V+V  G  DG G+GEA VV +NH++ QMAL RD  +MGRR     YIE+FQ KR DYY+AIV Q    N
Sbjct:  107 LEVVLGPFPCARLRGLPFEASIEDVVVFFQGLVILDAVVVPSGNSDGMGSGEAFVVFANHMDFQMALQRDHHNMGRR-----YIEVFQGKRTDYYAAIVSQHAQHN 207

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: A0A7S4NCM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCM0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.450e-32
Identity = 91/239 (38.08%), Postives = 118/239 (49.37%), Query Frame = 0

Query:   92 GMGDYS---LEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDG--RGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQ-----------------LQSQNTGGG-----------------------------MQRHG----------GMAHAMGGXXXXXXIGADGLAMPA---------VHTGVIRMRGLPFSATKQDVINFFQG 260
            G G++S   LE VLG FPCVRLRGLP+ A+++DVL FFQGLV LD+V+V   D   +G GEA V+L NH++ QMAL RD+Q+MG R     YIE+FQ +R DYY+AI  Q                 +     GGG                             M  +G          G+    G       +G  G   P+          HTG +RMRGLPFSA+K++VI FF+G
Sbjct:  104 GSGEHSSDMLEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHR-----YIEVFQGRRSDYYAAIAAQFFQNKENLVDADRRGEHVMPDEAGGGPVWGGVAAVPAQTLNHPASMQQARPQGAVMPGNGVIGETKKSGAGVRGGQGIRPDQGSMGHMGTRAPSHRGGGIREGEHTGYLRMRGLPFSASKEEVIGFFKG 337

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: C1MRF4_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MRF4_MICPC)

HSP 1 Score: 126 bits (317), Expect = 5.670e-32
Identity = 79/175 (45.14%), Postives = 103/175 (58.86%), Query Frame = 0

Query:   84 GGGAMSTMGMGDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQLQSQNTGGGMQRHGGMAHAMGGXXXXXXIGADGLAMPAVHTGVIRMRGLPFSATKQDVINFF 258
            G G     G G + +E V   FP VRLRGLPF A+  DV  FFQGL P+DV++V R DGR  GEA VVL+N + M++AL +++  MGRR     YIE+F+SK+ DYY A+   +   + G G    GG  +  G                A HTGV+++RGLPFSATK D+I FF
Sbjct:    6 GPGFPGARGPGGFGVEKV---FPVVRLRGLPFNASEYDVQEFFQGLEPVDVLIVRR-DGRATGEAYVVLANQMLMEVALQKNRGPMGRR-----YIEVFRSKKQDYYHAVSIAVNEPDYGNGNGGQGGGYYDNGPL--------------AEHTGVLKLRGLPFSATKDDIITFF 157

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: A0A7S4NBH0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBH0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.910e-30
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 0

Query:   92 GMGDYS---LEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDG--RGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIV 194
            G G++S   LE VLG FPCVRLRGLP+ A+++DVL FFQGLV LD+V+V   D   +G GEA V+L NH++ QMAL RD+Q+MG R     YIE+FQ +R DYY+AI 
Sbjct:  104 GSGEHSSDMLEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHR-----YIEVFQGRRSDYYAAIA 206

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: C1E0A7_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E0A7_MICCC)

HSP 1 Score: 121 bits (304), Expect = 7.970e-30
Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 0

Query:  105 FPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQLQSQNTGGGMQRHGG----------MAHA--MGGXXXXXXIGADGLAMPAV-HTGVIRMRGLPFSATKQDVINFF 258
            FP VRLRGLPF A   D+L FFQGL P+DV++V R DGR  GEA V+ +N ++M  AL +++  MGRR     YIE+F+SK+ DYY A+   + ++ T  G   +GG          +AH   +GG       GA     P   HTGV++MRGLPFSATK D+I F+
Sbjct:   18 FPVVRLRGLPFNAGEFDILEFFQGLDPVDVLIVRR-DGRATGEAYVLFANPMQMDFALQKNRGPMGRR-----YIEVFRSKKQDYYYAVAHAV-NEPTPHGTDFYGGDNGLASGAGHLAHVAGVGGPAPPVPHGAPAAVRPPQEHTGVLKMRGLPFSATKDDIITFY 177

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BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Match: A0A7R9WKK8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKK8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.180e-29
Identity = 91/231 (39.39%), Postives = 116/231 (50.22%), Query Frame = 0

Query:   98 LEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDG--RGAGEAIVVLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQL---------------------------------------------QSQNTG---------GGMQRHGGMAHAMGGXXXXXXIGAD------------GLAMPAVHTGVIRMRGLPFSATKQDVINFFQG 260
            LE VLG FPCVRLRGLP+ A+++DVL FFQGLV LD+V+V   D   +G GEA V+L NH++ QMAL RD+Q+MG R     YIE+FQ +R DYY+AI  Q                                              Q++  G         G M+++G  A   GG XXXXX                G      HTG +RMRGLPFSA+K++V  FF+G
Sbjct:   95 LEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHR-----YIEVFQGRRSDYYAAIAAQFFQNKENVVDSDRQVEHEIPEEARAGPAWGGVGTVPAQQLNHPPMPQARPQGAVVPGNGVIGEMKKNG--AGIRGGQXXXXXXXXXXXXXXRGPSHRGGGIREGEHTGYLRMRGLPFSASKEEVTEFFKG 318

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9401.20388.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LML1_ECTSI	3.960e-95	80.49	Heterogeneous nuclear ribonucleoprotein, putative ...	[more]
A0A836CJZ5_9STRA	2.370e-57	60.11	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A7S2V6E5_9STRA	3.180e-38	61.67	Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa...	[more]
A0A7S3BYF2_9VIRI	1.280e-32	50.63	Hypothetical protein n=1 Tax=Prasinoderma singular...	[more]
A0A7S4T0I6_9STRA	2.500e-32	63.21	Hypothetical protein (Fragment) n=2 Tax=Ditylum br...	[more]
A0A7S4NCM0_9STRA	5.450e-32	38.08	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
C1MRF4_MICPC	5.670e-32	45.14	Predicted protein n=2 Tax=Micromonas pusilla TaxID...	[more]
A0A7S4NBH0_9STRA	5.910e-30	57.41	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
C1E0A7_MICCC	7.970e-30	45.51	Uncharacterized protein n=2 Tax=Micromonas TaxID=3...	[more]
A0A7R9WKK8_9STRA	2.180e-29	39.39	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 104..200 e-value: 1.9E-19 score: 71.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 232..260 e-value: 4.1E-5 score: 25.4
None	No IPR available	PANTHER	PTHR13976:SF71	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 98..259
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 98..259
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 94..182

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9401	contig	S-firma_M_contig9401:404..3821 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9401.20388.1	mRNA_S-firma_M_contig9401.20388.1	Sphaerotrichia firma Sfir_13m male	mRNA	S-firma_M_contig9401 404..3821 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_M_contig9401.20388.1 ID=prot_S-firma_M_contig9401.20388.1|Name=mRNA_S-firma_M_contig9401.20388.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=260bp
KQAGYGVGANGQGMGVNHMGGVQGVAGVNGQVPQQMAPQQGIMGQGMGQG
MGQGMGQGMGGQGMGQGMVGGGVGHGNVQGGMMGGGAMSTMGMGDYSLED
VLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIV
VLSNHVEMQMALSRDKQHMGRRQYDFTYIEIFQSKRMDYYSAIVGQLQSQ
NTGGGMQRHGGMAHAMGGGGGGGGIGADGLAMPAVHTGVIRMRGLPFSAT
KQDVINFFQG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf