mRNA_S-firma_M_contig938.20354.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig938.20354.1
Unique NamemRNA_S-firma_M_contig938.20354.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig938.20354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig938contigS-firma_M_contig938:24765..25490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size726
Cds size648
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828768.5690072-UTR-S-firma_M_contig938:24764..248421622828768.5690072-UTR-S-firma_M_contig938:24764..24842Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig938 24765..24842 +
1697105151.0909817-UTR-S-firma_M_contig938:24764..248421697105151.0909817-UTR-S-firma_M_contig938:24764..24842Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig938 24765..24842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828768.581607-CDS-S-firma_M_contig938:24842..254901622828768.581607-CDS-S-firma_M_contig938:24842..25490Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 24843..25490 +
1697105151.1049707-CDS-S-firma_M_contig938:24842..254901697105151.1049707-CDS-S-firma_M_contig938:24842..25490Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 24843..25490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig938.20354.1prot_S-firma_M_contig938.20354.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig938 24843..25490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig938.20354.1

>prot_S-firma_M_contig938.20354.1 ID=prot_S-firma_M_contig938.20354.1|Name=mRNA_S-firma_M_contig938.20354.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=216bp
MTLTHGRHTQPPLTCSGAACTPRSAPKKREHNKPNIQGEGRPNSPPPNDQ
PYNSPQREREKRVPAVFSLVNLFAGKFLSLSLSLSLGCLATAATSNLTKS
GFTAYCIPSCKPLTSAAARLRHHIHTSQSTAHVFRPLRPRFVLQPQHAGV
SRKRTRHMLLPLGQPLNSRTSLRHTLSTSTHRCTAARFQGGPEELPVISD
RLLEVRNMRSVRNDR*
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mRNA from alignment at S-firma_M_contig938:24765..25490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig938.20354.1 ID=mRNA_S-firma_M_contig938.20354.1|Name=mRNA_S-firma_M_contig938.20354.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=726bp|location=Sequence derived from alignment at S-firma_M_contig938:24765..25490+ (Sphaerotrichia firma Sfir_13m male)
GCGAATTCCTTCATGCATTAAATGTCGTGGCTTCGCTCAGAAAAATGAAA
CATTTGATCAACACTCCATATTAACAGAATGACCCTGACACACGGACGCC
ACACACAACCGCCGCTGACCTGCTCTGGCGCCGCATGCACACCTCGGTCG
GCTCCAAAAAAACGCGAACACAATAAACCCAATATACAGGGAGAGGGTCG
CCCAAATTCACCCCCCCCCAACGACCAACCATACAACAGCCCACAGAGAG
AGAGAGAGAAAAGGGTGCCCGCAGTTTTCTCATTGGTCAATTTGTTTGCG
GGAAAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTTGCCTCGCTAC
CGCTGCCACTTCTAATCTCACGAAAAGCGGGTTTACCGCATATTGCATTC
CTTCGTGCAAACCACTTACTTCTGCTGCCGCTCGCTTGCGACACCATATA
CATACATCGCAGTCTACGGCCCATGTTTTTAGACCCCTCCGGCCTCGATT
CGTCTTGCAGCCACAACATGCGGGAGTTAGTCGAAAGCGCACTCGCCATA
TGCTGCTGCCTTTGGGTCAACCTCTCAATTCACGTACATCCCTCAGACAC
ACCCTTTCGACAAGCACACACCGCTGTACAGCCGCCCGCTTTCAAGGGGG
ACCGGAGGAATTACCTGTCATTTCGGACCGACTTCTTGAGGTCCGAAATA
TGAGGTCGGTCCGAAATGACAGGTAA
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Coding sequence (CDS) from alignment at S-firma_M_contig938:24765..25490+

>mRNA_S-firma_M_contig938.20354.1 ID=mRNA_S-firma_M_contig938.20354.1|Name=mRNA_S-firma_M_contig938.20354.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1296bp|location=Sequence derived from alignment at S-firma_M_contig938:24765..25490+ (Sphaerotrichia firma Sfir_13m male)
ATGACCCTGACACACGGACGCCACACACAACCGCCGCTGACCTGCTCTGG
CGCCGCATGCACACCTCGGTCGGCTCCAAAAAAACGCGAACACAATAAAC
CCAATATACAGGGAGAGGGTCGCCCAAATTCACCCCCCCCCAACGACCAA
CCATACAACAGCCCACAGAGAGAGAGAGAGAAAAGGGTGCCCGCAGTTTT
CTCATTGGTCAATTTGTTTGCGGGAAAATTTCTCTCTCTCTCTCTCTCTC
TCTCTCTCGGTTGCCTCGCTACCGCTGCCACTTCTAATCTCACGAAAAGC
GGGTTTACCGCATATTGCATTCCTTCGTGCAAACCACTTACTTCTGCTGC
CGCTCGCTTGCGACACCATATACATACATCGCAGTCTACGGCCCATGTTT
TTAGACCCCTCCGGCCTCGATTCGTCTTGCAGCCACAACATGCGGGAGTT
AGTCGAAAGCGCACTCGCCATATGCTGCTGCCTTTGGGTCAACCTCTCAA
TTCACGTACATCCCTCAGACACACCCTTTCGACAAGCACACACCGCTGTA
CAGCCGCCCGCTTTCAAGGGGGACCGGAGGAATTACCTGTCATTTCGGAC
CGACTTCTTGAGGTCCGAAATATGAGGTCGGTCCGAAATGACAGGTAAAT
GACCCTGACACACGGACGCCACACACAACCGCCGCTGACCTGCTCTGGCG
CCGCATGCACACCTCGGTCGGCTCCAAAAAAACGCGAACACAATAAACCC
AATATACAGGGAGAGGGTCGCCCAAATTCACCCCCCCCCAACGACCAACC
ATACAACAGCCCACAGAGAGAGAGAGAGAAAAGGGTGCCCGCAGTTTTCT
CATTGGTCAATTTGTTTGCGGGAAAATTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCGGTTGCCTCGCTACCGCTGCCACTTCTAATCTCACGAAAAGCGG
GTTTACCGCATATTGCATTCCTTCGTGCAAACCACTTACTTCTGCTGCCG
CTCGCTTGCGACACCATATACATACATCGCAGTCTACGGCCCATGTTTTT
AGACCCCTCCGGCCTCGATTCGTCTTGCAGCCACAACATGCGGGAGTTAG
TCGAAAGCGCACTCGCCATATGCTGCTGCCTTTGGGTCAACCTCTCAATT
CACGTACATCCCTCAGACACACCCTTTCGACAAGCACACACCGCTGTACA
GCCGCCCGCTTTCAAGGGGGACCGGAGGAATTACCTGTCATTTCGGACCG
ACTTCTTGAGGTCCGAAATATGAGGTCGGTCCGAAATGACAGGTAA
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