mRNA_S-firma_M_contig9357.20322.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9357.20322.1
Unique NamemRNA_S-firma_M_contig9357.20322.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9357.20322.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.700e-19
Identity = 78/129 (60.47%), Postives = 86/129 (66.67%), Query Frame = 1 
Query:   49 FVEAVREAAAALDVAGAKEVGSRLAEKVRDAG-------LDVAAGLDVAGDSAXXXXXXXXXXXXXAIPIEIKDGDGAWEEALGGGADKKADADXXXXXXXXXXXXXXXXRSS---EAGIDRVWEAALS 405
            FVEAVREAAAALDV+GAKEVGSRLA KVRDAG        DVAAGLDVAGDSA             A+PIE++D    WEEAL G   +  D D   XXXXXXXXXXXXX ++   EA +D VWE ALS
Sbjct:  389 FVEAVREAAAALDVSGAKEVGSRLAGKVRDAGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKVLDAMPIELEDD--VWEEALKGEGCRSVDKDVDDXXXXXXXXXXXXXXATSIREAEVDGVWEEALS 515
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BLAST of mRNA_S-firma_M_contig9357.20322.1 vs. uniprot
Match: D8LHU9_ECTSI (Diacylglycerol kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.040e-17
Identity = 77/137 (56.20%), Postives = 90/137 (65.69%), Query Frame = 1 
Query:   49 FVEAVREAAAALDVAGAKEVGSRLAEKVRDAG-------LDVAAGLDVAGDSAXXXXXXXXXXXXXAIPIEIKDGDGAWEEALGGGADKKADADXXXXXXXXXXXXXXXXRSS---EAGIDRVWEAALSQGSASADE 429
            FVEAVREAAAALDV+GAK VGSRLA KVRDAG        DVAAGLDVAGDSA             A+PIE++D    WEEAL G   +  + D   XXXXXXXXXXXXX ++   E+ +D VWE ALS  +A+ +E
Sbjct:  379 FVEAVREAAAALDVSGAKGVGSRLAGKVRDAGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKVLDAMPIELEDD--VWEEALKGEGYRSVNKDVDDXXXXXXXXXXXXXXATSIRESEVDGVWEEALSLSAAAKEE 513
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9357.20322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LB27_9PHAE2.700e-1960.47Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LHU9_ECTSI1.040e-1756.20Diacylglycerol kinase (Partial) (Fragment) n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9357contigS-firma_M_contig9357:319..1032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue3.4e-15
Seed eggNOG ortholog2880.D8LHU9
Preferred nameDGKK
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
GOsGO:0001775,GO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006793,GO:0006796,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0009611,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0023052,GO:0030168,GO:0032501,GO:0035556,GO:0042060,GO:0044237,GO:0044238,GO:0044255,GO:0044464,GO:0046339,GO:0046486,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0071704,GO:0071944
EggNOG free text desc.diacylglycerol kinase activity
EggNOG OGsKOG1170@1,KOG1170@2759
EC2.7.1.107
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size429
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9357.20322.1prot_S-firma_M_contig9357.20322.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9357 319..1032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828765.9476023-CDS-S-firma_M_contig9357:318..4471622828765.9476023-CDS-S-firma_M_contig9357:318..447Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9357 319..447 +
1697105149.4582922-CDS-S-firma_M_contig9357:318..4471697105149.4582922-CDS-S-firma_M_contig9357:318..447Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9357 319..447 +
1622828765.9612179-CDS-S-firma_M_contig9357:720..9001622828765.9612179-CDS-S-firma_M_contig9357:720..900Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9357 721..900 +
1697105149.478992-CDS-S-firma_M_contig9357:720..9001697105149.478992-CDS-S-firma_M_contig9357:720..900Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9357 721..900 +
1622828765.9731195-CDS-S-firma_M_contig9357:912..10321622828765.9731195-CDS-S-firma_M_contig9357:912..1032Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9357 913..1032 +
1697105149.4892273-CDS-S-firma_M_contig9357:912..10321697105149.4892273-CDS-S-firma_M_contig9357:912..1032Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9357 913..1032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9357.20322.1

>prot_S-firma_M_contig9357.20322.1 ID=prot_S-firma_M_contig9357.20322.1|Name=mRNA_S-firma_M_contig9357.20322.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=143bp
AGSSGGGGGSEQQGGSFVEAVREAAAALDVAGAKEVGSRLAEKVRDAGLD
VAAGLDVAGDSAKEGGRRLAEKVMDAIPIEIKDGDGAWEEALGGGADKKA
DADGGGGGEDADPAAAAAARSSEAGIDRVWEAALSQGSASADE
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mRNA from alignment at S-firma_M_contig9357:319..1032+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9357.20322.1 ID=mRNA_S-firma_M_contig9357.20322.1|Name=mRNA_S-firma_M_contig9357.20322.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=714bp|location=Sequence derived from alignment at S-firma_M_contig9357:319..1032+ (Sphaerotrichia firma Sfir_13m male)
GCCGGTTCCTCCGGCGGCGGCGGCGGCTCGGAGCAGCAGGGGGGAAGCTT
CGTCGAGGCCGTGCGAGAGGCGGCGGCGGCGCTGGACGTGGCCGGGGCGA
AGGAGGTCGGGAGCCGGCTGGCCGAGAAGGTAGGCTTTGTCTTCGTGGCG
AGCACGGCGGGGACCGGGCCGCGAGGACCGCGAGGAAGGGTTTGGAAGAA
CAGCCCGACTCTGCCGCCACGGTGCTGCTGCTGCTGCTGCTGCTGTAGCG
TGCGTGACACGCTATTTTCGTTCGTCTCGTGCGGCGTAAATTACCGGCAT
TACTCTGTACGTTGTCATTTTTGTTTCGGTCGTCTTGATGCTTAGTTTTC
CGTACACGCGCACACCGCCCTCGCCGCCGCCGCCGCCACCGCCGCCCAAC
AGGTCCGAGACGCCGGGCTGGACGTAGCGGCGGGCCTGGACGTCGCCGGC
GACAGCGCCAAGGAGGGTGGCAGGCGCCTGGCTGAGAAGGTAATGGACGC
CATCCCGATCGAGATCAAGGACGGGGATGGGGCGTGGGAGGAAGCGCTGG
GCGGGGGCGCCGACAAGAAGGCCGACGCGGACGCGGACGCGGAGGGGGGT
GGGGGCGGGGAGGATGCCGACCCGGCGGCCGCCGCCGCCGCCAGGAGCAG
CGAGGCCGGAATCGATCGGGTCTGGGAGGCGGCGTTGTCGCAGGGATCTG
CGTCGGCGGACGAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9357:319..1032+

>mRNA_S-firma_M_contig9357.20322.1 ID=mRNA_S-firma_M_contig9357.20322.1|Name=mRNA_S-firma_M_contig9357.20322.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=858bp|location=Sequence derived from alignment at S-firma_M_contig9357:319..1032+ (Sphaerotrichia firma Sfir_13m male)
GCCGGTTCCTCCGGCGGCGGCGGCGGCTCGGAGCAGCAGGGGGGAAGCTT
CGTCGAGGCCGTGCGAGAGGCGGCGGCGGCGCTGGACGTGGCCGGGGCGA
AGGAGGTCGGGAGCCGGCTGGCCGAGAAGGCCGGTTCCTCCGGCGGCGGC
GGCGGCTCGGAGCAGCAGGGGGGAAGCTTCGTCGAGGCCGTGCGAGAGGC
GGCGGCGGCGCTGGACGTGGCCGGGGCGAAGGAGGTCGGGAGCCGGCTGG
CCGAGAAGGTCCGAGACGCCGGGCTGGACGTAGCGGCGGGCCTGGACGTC
GCCGGCGACAGCGCCAAGGAGGGTGGCAGGCGCCTGGCTGAGAAGGTAAT
GGACGCCATCCCGATCGAGATCAAGGACGGGGATGGGGCGTGGGAGGAAG
CGCTGGGCGGGGGCGCCGACAAGAAGGCCGACGCGGACGTCCGAGACGCC
GGGCTGGACGTAGCGGCGGGCCTGGACGTCGCCGGCGACAGCGCCAAGGA
GGGTGGCAGGCGCCTGGCTGAGAAGGTAATGGACGCCATCCCGATCGAGA
TCAAGGACGGGGATGGGGCGTGGGAGGAAGCGCTGGGCGGGGGCGCCGAC
AAGAAGGCCGACGCGGACGGGGGTGGGGGCGGGGAGGATGCCGACCCGGC
GGCCGCCGCCGCCGCCAGGAGCAGCGAGGCCGGAATCGATCGGGTCTGGG
AGGCGGCGTTGTCGCAGGGATCTGCGTCGGCGGACGAGGGGGGTGGGGGC
GGGGAGGATGCCGACCCGGCGGCCGCCGCCGCCGCCAGGAGCAGCGAGGC
CGGAATCGATCGGGTCTGGGAGGCGGCGTTGTCGCAGGGATCTGCGTCGG
CGGACGAG
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