mRNA_S-firma_M_contig933.20295.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig933.20295.1
Unique NamemRNA_S-firma_M_contig933.20295.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig933.20295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig933contigS-firma_M_contig933:9335..9811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828763.2467642-CDS-S-firma_M_contig933:9334..96761622828763.2467642-CDS-S-firma_M_contig933:9334..9676Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig933 9335..9676 +
1697105147.8532662-CDS-S-firma_M_contig933:9334..96761697105147.8532662-CDS-S-firma_M_contig933:9334..9676Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig933 9335..9676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828763.2623239-UTR-S-firma_M_contig933:9676..98111622828763.2623239-UTR-S-firma_M_contig933:9676..9811Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig933 9677..9811 +
1697105147.8645244-UTR-S-firma_M_contig933:9676..98111697105147.8645244-UTR-S-firma_M_contig933:9676..9811Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig933 9677..9811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig933.20295.1prot_S-firma_M_contig933.20295.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig933 9335..9676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig933.20295.1

>prot_S-firma_M_contig933.20295.1 ID=prot_S-firma_M_contig933.20295.1|Name=mRNA_S-firma_M_contig933.20295.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=114bp
GELLPPKHLKLSECIRTHFLRHAWPTGVPRQSCIRLSKVLLALVRLKLES
EVPRSSRKHKDGQTSTRYIPPILIRDDSSENKNRGSKPDATPGNLREIQA
TSLGVKSRQERHP*
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mRNA from alignment at S-firma_M_contig933:9335..9811+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig933.20295.1 ID=mRNA_S-firma_M_contig933.20295.1|Name=mRNA_S-firma_M_contig933.20295.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=477bp|location=Sequence derived from alignment at S-firma_M_contig933:9335..9811+ (Sphaerotrichia firma Sfir_13m male)
GGGGAGCTTCTGCCTCCGAAACACTTAAAGCTCTCAGAGTGCATCCGCAC
TCATTTCCTGCGGCATGCTTGGCCCACCGGCGTGCCGCGACAATCATGCA
TACGACTATCCAAGGTATTGCTTGCACTTGTACGACTGAAGCTTGAGTCG
GAAGTCCCTCGGTCGTCCCGGAAGCACAAGGACGGACAAACTTCCACGCG
ATACATTCCACCCATACTCATCCGAGATGACTCATCCGAGAATAAAAACC
GCGGCAGCAAACCGGATGCGACCCCAGGCAACCTTAGAGAAATCCAAGCA
ACAAGCCTGGGCGTCAAGAGCCGCCAAGAACGGCATCCGTGACGCCAAAC
AACTGCCGCCATGCGTATACGACAATATCGACACACCTACCACGAGCAGG
AACAACAATCGCAACCTCCGAAGCACTCCGGCGGTAAGTCGTACTGTACC
TCGGTCTCCATCTCCGCCAGCATGCCC
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Coding sequence (CDS) from alignment at S-firma_M_contig933:9335..9811+

>mRNA_S-firma_M_contig933.20295.1 ID=mRNA_S-firma_M_contig933.20295.1|Name=mRNA_S-firma_M_contig933.20295.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=684bp|location=Sequence derived from alignment at S-firma_M_contig933:9335..9811+ (Sphaerotrichia firma Sfir_13m male)
GGGGAGCTTCTGCCTCCGAAACACTTAAAGCTCTCAGAGTGCATCCGCAC
TCATTTCCTGCGGCATGCTTGGCCCACCGGCGTGCCGCGACAATCATGCA
TACGACTATCCAAGGTATTGCTTGCACTTGTACGACTGAAGCTTGAGTCG
GAAGTCCCTCGGTCGTCCCGGAAGCACAAGGACGGACAAACTTCCACGCG
ATACATTCCACCCATACTCATCCGAGATGACTCATCCGAGAATAAAAACC
GCGGCAGCAAACCGGATGCGACCCCAGGCAACCTTAGAGAAATCCAAGCA
ACAAGCCTGGGCGTCAAGAGCCGCCAAGAACGGCATCCGTGAGGGGAGCT
TCTGCCTCCGAAACACTTAAAGCTCTCAGAGTGCATCCGCACTCATTTCC
TGCGGCATGCTTGGCCCACCGGCGTGCCGCGACAATCATGCATACGACTA
TCCAAGGTATTGCTTGCACTTGTACGACTGAAGCTTGAGTCGGAAGTCCC
TCGGTCGTCCCGGAAGCACAAGGACGGACAAACTTCCACGCGATACATTC
CACCCATACTCATCCGAGATGACTCATCCGAGAATAAAAACCGCGGCAGC
AAACCGGATGCGACCCCAGGCAACCTTAGAGAAATCCAAGCAACAAGCCT
GGGCGTCAAGAGCCGCCAAGAACGGCATCCGTGA
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