mRNA_S-firma_M_contig926.20209.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig926.20209.1
Unique NamemRNA_S-firma_M_contig926.20209.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: A0A6H5JLR1_9PHAE (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLR1_9PHAE)

HSP 1 Score: 462 bits (1190), Expect = 1.260e-159
Identity = 246/270 (91.11%), Postives = 258/270 (95.56%), Query Frame = 1
Query:    1 MSGGGEGGQVAGEEADKSSMSASVFNLAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHALLPAGGAPVFGVKGTNPICFLVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTSFLASVVTMTAV 810
            MSGGGEGGQ A EE DKS MSASVFNLAKNILGAGMLSLP+GVAAFSDS+KAI+PA+LIIA LGAVSAYTFVLIGRSCAET AESYEQSWARTVGQ+SAW+PAGACVATCFAGCLAFT+IIGDSFS+LAKTFGAPA+VA RSNIIMAVSA VLLPLSLLKNLKSLGFTSMLGTSGL+YTAVMMAIRFFDGSYAAGGKFHALLPA GAPVF  KGTNPICFLVLVSMLSTAYEAHFNAPLFYREL++NTVPRYSKMVSTSFLASV TMTAV
Sbjct:   81 MSGGGEGGQAASEEGDKSGMSASVFNLAKNILGAGMLSLPNGVAAFSDSKKAIIPASLIIAVLGAVSAYTFVLIGRSCAETNAESYEQSWARTVGQRSAWVPAGACVATCFAGCLAFTIIIGDSFSALAKTFGAPALVAKRSNIIMAVSATVLLPLSLLKNLKSLGFTSMLGTSGLVYTAVMMAIRFFDGSYAAGGKFHALLPAAGAPVFDAKGTNPICFLVLVSMLSTAYEAHFNAPLFYRELKDNTVPRYSKMVSTSFLASVATMTAV 350          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: D7FJZ0_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ0_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 3.020e-76
Identity = 126/242 (52.07%), Postives = 174/242 (71.90%), Query Frame = 1
Query:   67 SVFNLAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHALLPAGGAPVFGVKGTNPICFLVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTSFLASV 792
            S+FNL KN++GAG+L++P GV AFS SR A+VP   +I ALG +S Y F LIGR CA TGA SY  +W++T+G+K++W+P  +C A  F  C+A+++IIGD F+ +   FGAP V+A R+NI+  VSA+VLLPL LLK+L +L +TS++G  G +YTA +M IR+FD SY  GG+F A L     PVF   G      L+LVSMLSTA+ AHFNAP FY EL++ +VPR++ +V +SF A++
Sbjct:   70 SIFNLIKNVVGAGILAIPGGVTAFSQSRAAVVPTVAMIVALGGMSGYCFSLIGRVCAATGASSYGDAWSKTIGEKTSWLPTSSCTAKTFFACMAYSIIIGDVFADVLAAFGAPGVLAARTNILCLVSALVLLPLCLLKDLSALSYTSIMGVLGTVYTAAVMGIRYFDNSYVEGGRFFAGLAKDARPVFSGTGAMNSQALILVSMLSTAFVAHFNAPKFYAELKDKSVPRFNTVVGSSFAAAI 311          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: A0A836CMH1_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH1_9STRA)

HSP 1 Score: 239 bits (609), Expect = 3.270e-73
Identity = 131/251 (52.19%), Postives = 184/251 (73.31%), Query Frame = 1
Query:   49 KSSMSASVFNLAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKF-HALLPAGGAPVF-GVKGTNPICFLVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTSFLASVV 795
            K+ +  S+FNL KNI+G+G+L+LP GVAAFS +R A+VPA+++I  LG +S Y F LIGR+CA T A SY  +WA TV  K+ WMP  + VA  F  CL++++IIGD+F++LA+TF APA +A R  I+ A+S V LLPL L+ +L  L +TS++G +G +YTA +MA+R+FDGSYA GG+F +A   A   P+F G    NP+  L+LVSMLST++ AH+NAP FY EL++ TVP+Y+ +V TSF AS++
Sbjct:   26 KAEVGGSIFNLVKNIVGSGILALPGGVAAFSHARGAVVPASVLILLLGLLSGYCFSLIGRACAATNARSYGDAWAATVEPKTVWMPLSSVVAKTFFTCLSYSIIIGDTFAALAQTFAAPAWLAYRPTILSAISGVFLLPLCLMTDLSPLRYTSIVGIAGTLYTAGVMALRYFDGSYALGGRFFNAAASAAKGPLFTGSAALNPLS-LILVSMLSTSFIAHYNAPKFYHELKDKTVPKYNTVVGTSFGASIL 275          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: A0A835Z2K9_9STRA (Aa_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K9_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.500e-71
Identity = 149/260 (57.31%), Postives = 175/260 (67.31%), Query Frame = 1
Query:    1 MSGGGEGG--QVAGEEADKSSMSASVFNLAKNILGAGMLSLPS------------GVAA------FSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIR-----------------FFDGSYAAGGKFHALLPAGGAPVFGVKGTNPICFLVL 669
            MSGG  GG    A  EADKS+M+ SVFNL KNI+ A   +  +             VAA        D+R AI PA  IIAALGA+SAYTF LIGRSCA+T AESYEQ+W+R V  +SA +PAGACVATCFAGCLA+TLIIGD+FS+LA+T GAPA VA RS +I  +SA VLLPLSLL+NL +LGFTSMLGT GL+YTA MM +R                 +FDGSYA  G+F  LLPA   PVFG+K  NP+ FLVL
Sbjct:   63 MSGGSAGGGEASAATEADKSTMTQSVFNLVKNIMEAMTHAHHATHCVHRARRRRHAVAAGGRRRVLRDARGAIAPAGAIIAALGALSAYTFSLIGRSCAQTKAESYEQAWSRAVSPRSAALPAGACVATCFAGCLAYTLIIGDTFSALARTAGAPARVAARSTVIGVLSAGVLLPLSLLRNLSALGFTSMLGTGGLLYTAGMMGLRVLTNTLFVAAAAALMRRYFDGSYAPSGRFFNLLPAAAQPVFGMKKANPLLFLVL 322          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: A0A6S9E4U8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E4U8_HETAK)

HSP 1 Score: 236 bits (602), Expect = 2.710e-71
Identity = 128/251 (51.00%), Postives = 179/251 (71.31%), Query Frame = 1
Query:   64 ASVFNLAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHALLPAGGAPVFGVKGTN--PICFLVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTSFLASVVTMTAV 810
            AS+FNL K+I+GAG+L+LP GVAAFSD+  A+  AA +  A+G +SAY F LIGR CA   A++Y  +WA+++  K+AW+PA AC      GC+ +++IIGD+ S+LA+TFG PAV+A R+NI++ ++  V+ PL LLKNLKSL FTS+LG  G +YT V MAIR  DGSY  GG+F   +PA   P F VKG +   +  L+LVSMLSTA+ AH+NAP FY +L+  +VPRY+K+V  SF  +++   ++
Sbjct:   80 ASIFNLVKSIVGAGVLALPGGVAAFSDAPGAMAAAAGLTGAMGLLSAYCFSLIGRVCAAYDAKTYFDAWAKSISPKTAWLPAFACNFKTLIGCILYSIIIGDTASALAQTFGLPAVLAARTNILLLLTGGVIFPLCLLKNLKSLQFTSLLGIGGTVYTGVAMAIRLLDGSYRTGGRFAGSIPA--QPSFNVKGGSMAQLSSLILVSMLSTAFIAHYNAPKFYHDLKEKSVPRYNKVVYASFACAILAFVSI 328          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: F0Y682_AURAN (Uncharacterized protein AOT7 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y682_AURAN)

HSP 1 Score: 221 bits (562), Expect = 4.160e-66
Identity = 128/258 (49.61%), Postives = 176/258 (68.22%), Query Frame = 1
Query:   49 KSSMSASVFNLAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHALLPAGG--APVFGVKGTNPICFLVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTSFLASVVTMTAVRT 816
            KSS+ AS  NLAKNI+G+G+L+LP+GVAA+S +R A  PA L+IAALGAVSAY F L+GR+CA TG  +Y  +W +TVG  +  +  G C      GC+++ +IIGD+ ++LAK  GAPA++A R  ++  V A VL PLS+L++LKSL  TSMLG +G++YTA+++ +R  DGSYA  GK  A L A G   P FG  G++P   L+LVSML+T++ AH+NA  FY EL+N T+ RY  +    F  +V    AV T
Sbjct:   50 KSSVPASTLNLAKNIVGSGVLALPAGVAAYSSARGASAPACLLIAALGAVSAYCFALVGRACAATGTSTYRGAWEKTVGPGTGGLITGICSFKTLVGCVSYCIIIGDTGTALAKKLGAPALLARRDVLLSTVGAAVLFPLSMLRDLKSLAPTSMLGLAGMLYTALVVVLRGLDGSYAGDGKMLAALVAEGKPTPAFGT-GSSPGGALLLVSMLATSFIAHYNAANFYVELENPTLARYGTVAGAGFSIAVAFFCAVAT 306          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: A0A1Z5J5N4_FISSO (Aa_trans domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J5N4_FISSO)

HSP 1 Score: 217 bits (552), Expect = 8.110e-65
Identity = 117/243 (48.15%), Postives = 170/243 (69.96%), Query Frame = 1
Query:   70 VFNLAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHALLPAGGAPVFGVKGT--NPICFLVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTSFLASV 792
            +FNL K I+GAG+LSLP+G+A + ++  A+ PA  +IAA+G++SAY F LIGRSCA TG +++ Q+W+  V +KS+W+PA +         LA+++I+GD+F+SL  T G      ++S  ++ V++ +LLPL LLKNL +L   S+LG+ G++YTA+ MAIR+F  +YA GGKF   LP    P FG + +  NP    +L+ MLSTAY AHFNAP FY EL++NT+PRY K+V+TSF  S+
Sbjct:   65 IFNLVKGIVGAGVLSLPAGIAKYGNAPGAVAPAVFLIAAIGSLSAYGFALIGRSCALTGTKTFRQAWSAAVSEKSSWIPAWSVTLKTMFAVLAYSMILGDTFASLLATAG---FAVSKSMALVGVTSTLLLPLCLLKNLNALAPFSLLGSLGMVYTAIAMAIRYFSKAYAVGGKFAKDLPVNLQPAFGTQSSVFNPAS-TILLGMLSTAYMAHFNAPKFYTELKDNTIPRYVKVVATSFAISI 303          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: A0A7S2W0Q8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0Q8_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.760e-64
Identity = 111/239 (46.44%), Postives = 164/239 (68.62%), Query Frame = 1
Query:   70 VFNLAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHALLPAGGAPVFGVKGTNPICF---LVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTS 777
            +FNL K+I+GAG+LSLP+G+AAF ++  A++P+A++I  +G++SAY F LIGR CA+TGA SY ++W +TVG  ++WMPA +    CF   LA+++I+ D+F +L   FG      +R N++  ++ +VL+PL L+KNL SL   S+LG  G+ YT + M IR+FDGSY   GKF   +     P FG  G + +     L+L+ MLSTAY AHFNAP FY EL++NT+ RY+ +V++S
Sbjct:  110 IFNLVKSIVGAGVLSLPAGIAAFGNAPSAVLPSAILILVIGSISAYGFSLIGRVCADTGARSYREAWEKTVGSSTSWMPAASSTFNCFIANLAYSMILADTFKNLLSGFGMEI---SRQNVLFGITLIVLIPLCLMKNLSSLAPFSLLGIMGMAYTILAMGIRYFDGSYGTDGKFLVDVAENLKPSFGDNGASAVMSPKSLILICMLSTAYMAHFNAPKFYIELKDNTIKRYNAVVTSS 345          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: A0A7S2VHC0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VHC0_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.970e-64
Identity = 113/242 (46.69%), Postives = 167/242 (69.01%), Query Frame = 1
Query:   79 LAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHALLPAGGAPVFGVKGTNPICF---LVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTSFLASVV 795
            + K I+G G+LSLP+G+AAF D+  A +PAA++IA++G+++AY F L+GR CA TGA SY+ +W  TVG  +AW+P  +CV   F   LA+++++GD+FS+L +TFG      +R   ++ ++  VL+PL  LK+L SL   S++G +G++YTA+ MA+RFFDGSYA GGK  A +     P  G KG + +      +L+ MLSTAY AHFNAP FY EL+NNT+ R++  V+TSF  S++
Sbjct:    1 MVKAIVGVGVLSLPAGIAAFGDAPSASIPAAILIASIGSIAAYNFSLLGRLCAMTGATSYKSAWEETVGASTAWIPGSSCVIKTFFAVLAYSMVLGDTFSALFETFGFNV---SREKALIGLTVTVLMPLCKLKDLSSLAPFSLVGIAGMLYTALAMAVRFFDGSYAEGGKLAADVAESLRPALGTKGASAVFSSNAFILICMLSTAYMAHFNAPKFYLELENNTIARWNTCVATSFSISIL 239          
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Match: A0A1Z5JSY6_FISSO (Aa_trans domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSY6_FISSO)

HSP 1 Score: 217 bits (552), Expect = 1.100e-63
Identity = 117/243 (48.15%), Postives = 170/243 (69.96%), Query Frame = 1
Query:   70 VFNLAKNILGAGMLSLPSGVAAFSDSRKAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAWMPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSAVVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHALLPAGGAPVFGVKGT--NPICFLVLVSMLSTAYEAHFNAPLFYRELQNNTVPRYSKMVSTSFLASV 792
            +FNL K I+GAG+LSLP+G+A + ++  A+ PA  +IAA+G++SAY F LIGRSCA TG +++ Q+W+  V +KS+W+PA +         LA+++I+GD+F+SL  T G      ++S  ++ V++ +LLPL LLKNL +L   S+LG+ G++YTA+ MAIR+F  +YA GGKF   LP    P FG + +  NP    +L+ MLSTAY AHFNAP FY EL++NT+PRY K+V+TSF  S+
Sbjct:  112 IFNLVKGIVGAGVLSLPAGIAKYGNAPGAVTPAVFLIAAIGSLSAYGFALIGRSCALTGTKTFRQAWSAAVSEKSSWIPAWSVTLKTMFAVLAYSMILGDTFASLFATAG---FAVSKSTALIGVTSTLLLPLCLLKNLNALAPFSLLGSLGMVYTAIAMAIRYFGKAYAVGGKFAKDLPVSLQPAFGTQSSVFNPAS-TILLGMLSTAYMAHFNAPKFYTELKDNTIPRYVKVVATSFAISI 350          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig926.20209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLR1_9PHAE1.260e-15991.11Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
D7FJZ0_ECTSI3.020e-7652.07Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A836CMH1_9STRA3.270e-7352.19Transmembrane amino acid transporter protein-domai... [more]
A0A835Z2K9_9STRA1.500e-7157.31Aa_trans domain-containing protein n=1 Tax=Tribone... [more]
A0A6S9E4U8_HETAK2.710e-7151.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y682_AURAN4.160e-6649.61Uncharacterized protein AOT7 n=1 Tax=Aureococcus a... [more]
A0A1Z5J5N4_FISSO8.110e-6548.15Aa_trans domain-containing protein n=1 Tax=Fistuli... [more]
A0A7S2W0Q8_9STRA1.760e-6446.44Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2VHC0_9STRA2.970e-6446.69Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1Z5JSY6_FISSO1.100e-6348.15Aa_trans domain-containing protein n=1 Tax=Fistuli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig926contigS-firma_M_contig926:22973..26281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score466.5
Seed ortholog evalue8.8e-129
Seed eggNOG ortholog2880.D8LM06
KEGG koko:K13576,ko:K14997
KEGG TC2.A.18.6,2.A.18.6.2,2.A.18.6.3
KEGG Pathwayko04724,ko04727,ko04964,map04724,map04727,map04964
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAmino acid transporter, transmembrane
Ec32 orthologEc-14_002380.1
Exons5
Model size822
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig926.20209.1prot_S-firma_M_contig926.20209.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig926 22973..26281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828753.7830722-CDS-S-firma_M_contig926:22972..229991622828753.7830722-CDS-S-firma_M_contig926:22972..22999Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 22973..22999 +
1697105142.052069-CDS-S-firma_M_contig926:22972..229991697105142.052069-CDS-S-firma_M_contig926:22972..22999Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 22973..22999 +
1622828753.7986703-CDS-S-firma_M_contig926:23813..239351622828753.7986703-CDS-S-firma_M_contig926:23813..23935Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 23814..23935 +
1697105142.069109-CDS-S-firma_M_contig926:23813..239351697105142.069109-CDS-S-firma_M_contig926:23813..23935Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 23814..23935 +
1622828753.813674-CDS-S-firma_M_contig926:24706..250381622828753.813674-CDS-S-firma_M_contig926:24706..25038Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 24707..25038 +
1697105142.079649-CDS-S-firma_M_contig926:24706..250381697105142.079649-CDS-S-firma_M_contig926:24706..25038Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 24707..25038 +
1622828753.8302298-CDS-S-firma_M_contig926:25479..256611622828753.8302298-CDS-S-firma_M_contig926:25479..25661Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 25480..25661 +
1697105142.091719-CDS-S-firma_M_contig926:25479..256611697105142.091719-CDS-S-firma_M_contig926:25479..25661Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 25480..25661 +
1622828753.8438017-CDS-S-firma_M_contig926:26122..262811622828753.8438017-CDS-S-firma_M_contig926:26122..26281Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 26123..26281 +
1697105142.1010208-CDS-S-firma_M_contig926:26122..262811697105142.1010208-CDS-S-firma_M_contig926:26122..26281Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 26123..26281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig926.20209.1

>prot_S-firma_M_contig926.20209.1 ID=prot_S-firma_M_contig926.20209.1|Name=mRNA_S-firma_M_contig926.20209.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=274bp
MSGGGEGGQVAGEEADKSSMSASVFNLAKNILGAGMLSLPSGVAAFSDSR
KAIVPAALIIAALGAVSAYTFVLIGRSCAETGAESYEQSWARTVGQKSAW
MPAGACVATCFAGCLAFTLIIGDSFSSLAKTFGAPAVVANRSNIIMAVSA
VVLLPLSLLKNLKSLGFTSMLGTSGLIYTAVMMAIRFFDGSYAAGGKFHA
LLPAGGAPVFGVKGTNPICFLVLVSMLSTAYEAHFNAPLFYRELQNNTVP
RYSKMVSTSFLASVVTMTAVRTC*
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mRNA from alignment at S-firma_M_contig926:22973..26281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig926.20209.1 ID=mRNA_S-firma_M_contig926.20209.1|Name=mRNA_S-firma_M_contig926.20209.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3309bp|location=Sequence derived from alignment at S-firma_M_contig926:22973..26281+ (Sphaerotrichia firma Sfir_13m male)
ATGTCGGGCGGCGGAGAAGGGGGGCAGGTACGCTGAGTAACACGGTTTTT GAGGGCTGCTGCATTGCTGCGGCAGACGATGCAACTCTTGTCTGTGTTTC GGGCTGGTGTGCTGTGAAGCAACAGCAGCGACATGTTCGTGTACCTCTCT GTTTTTCTAGCAAGATCCACTGGCTATTTCCAATGGCGCGCGGTACTTCC GCCGAGATTTGCGGATATCGCCGTTTTTTAACATGATCGCTAGCCGTTGG TGGCGTTCATGCTAGACTACTCCGTGCCTGTCGGCGCGCGCGGCGACACT TGATGAATCAACAGAACCTGCCGCGTACCATCTCTTATCAGCGCGCACAC GTTCCCTCTGTGACCAGATAAGAGATGTACCTTGAATGAAGATGCGATGT GTGCACGTAACTGCTTTGTTTCACAACCTTTGCAGGCATGGTCGGTTTGT TTTGGTGGTACGAGGTCTCGTTTTGTGCCAACGCCTGCTACAGCAGTTTC CGCCAATCATATGTATGCCGTTTCCGCCGCGTGACTATCCAGCAAGCACG AACGCATGTACGGCTGTTGGCCCTGTTGCCACCCACCACACCCCAACAGC AGCAACCTGAGATGTCAACCTGCAGCACGAGTTAGCTCCCGGCGCTCGCT TTACAGCAGTTCTTGCTAAAAAGCCTGCTCCACGACAGGAAGGCTCCACT CCAACCCACCTTTCCCCAGGCGCATTGGTCCAATGTGCTCGAAGTGTGCA TGATAAGATATGTTGAATTCGAGACACTGCAACGAGTTTCGCGTTTTCTA ACCTCGCCGCCTTGATGATGACATCACACCGCAACGTAAAGGTCGCCGGT GAGGAGGCGGACAAGTCTAGCATGTCAGCGTCGGTTTTCAACCTCGCCAA GAACATCCTCGGCGCGGGGATGCTCTCACTGCCGAGCGGCGTTGCTGCGT TTTCGGATTCCAGGTAAATATATACTTCTAGGTATTCTGCTGCTGCTCGC ATGCTTCGTTCACGTCGGTTTGAAGCACGATACTTTGTCAGCGTTTTATC ATGTAGGGGCGCACCGCCTCAAAATGGAGCCTGCGTGGTACTACTGGTGT AGTCTCGAGCCCAGCCTAGCCAGTCTGCGCAGCAGTGGTGCCTCTGTTGT CAAGTGTTTCGGCGGTTTCTCTTTGGAGGCGGGGCGGGGTGTGCAGGGCA CGCCAAAACATTACCGGAACCCTTGTGGCTTAACCTCGCACGCGTTCCTT CCAGAAACTGCTCCAAGTTTTGGGCATGTGCAAGGCTAAGATTATGGTGG CACAGCAGTCTCCATTCACGTTGTGTGGGGCCGTACTATTCGCTCCGCAG CTGGTCTGGTCCCAACACGATCAAATCAAACGTTGGTCGGCCCCCATTAG CCGTTTGCACGCCCGGCCCTTCACGACGCGAAGCCAAGCTTTTGAAGCCT TGAGACAACATTCGCGTCAAACCACTTCGGCAAAGCGAACCCGCACCAAC CCAAACCAGGAGAGTAGTCCAGGGACGTGCACGTCCGCCATACCCGCCCC GCTTCACCCCTCGCTCTCTCTCAGGCTCATGCTCAAGAATCGATTTTCGT TTGGACCGAAACTCAAGAGTCGAGAGTCGAAACCACCCCGTCTCATGCAA ACGCCGCGCGTCTGTGCGTATTTGTTTCGTTCTGCGGGTCGATCTTGGAT CCATCGATCCATCCCGCAAACCCTGGCCGTGCAGGAAGGCCATCGTCCCC GCCGCCCTCATCATCGCCGCGCTGGGCGCTGTGTCCGCCTACACGTTCGT GCTGATCGGCCGCTCGTGCGCCGAGACCGGGGCGGAGTCCTACGAGCAGT CGTGGGCGCGCACGGTGGGGCAGAAGTCGGCGTGGATGCCGGCCGGGGCG TGCGTGGCCACGTGCTTCGCGGGGTGCCTGGCCTTCACGCTCATCATCGG GGACAGCTTCTCGTCTCTGGCGAAGACCTTCGGGGCGCCGGCGGTGGTGG CCAACCGGTCGAACATCATCATGGCTGTCTCGGCGGTGGTGCTCCTGCCT CTGTCGCTCCTGAAAAGTGGGTCTTGCAGTTTTTGTGTGATTGGGCTTTG TGTGTGTTTGTTGTGCGTGTTTTACGTGTTCGATTTTTGCCTTCATGGGT TAACCTGCTCTTGCCGCTGCTGTTCGTTGTGGTTGTCGAATCGTGATACT GGCATGCGAGAGGGTGTGTCGTGGATGGAGCAGACAAGAATACGGTTCAC ATCGGCAGTACACGTATATGTACAATGGGACGTGTACATGTGGTGCCACG CCGCTGAGTAAGGTGATCTTCCACAGAAAACTGGTGCAACCCGGTCTCCT CGCTCCCAAGAGCAAGGTGCAGCTACGGCAGCAGCACCCCCCATCTTGTA GTCGCTCATGTCTCACCTTCCTTCGCGCCCCTGCTTGTTAACTGTGCGTT TTGGCCCTCCCCCGCGTTTTTTCCGTTTTGTTCCCTCGCAACACTTGTAA ACCAAAGACCTCAAGTCTCTCGGATTCACGAGCATGTTGGGGACGTCGGG CCTTATCTACACCGCCGTGATGATGGCCATTCGTTTCTTTGACGGCTCTT ACGCGGCGGGGGGCAAGTTCCACGCGCTGCTCCCGGCGGGCGGGGCCCCC GTGTTCGGCGTCAAGGGCACCAACCCCATCTGTTTCCTGGTAAGGAGGGG TTGTCGAGACAGCGGTCGACTCCTCAACGCCAACGATGTGCTGTGCAGAT ACTTGGTATGGATCTACGGCAAGGCTCAATGCTCGTCTTATTTTTTTTGC TATTGCCGGCCTGATTTTGTGTTTGGTGTCCGCTACATGAGGTAGTAGGG TCAATTCGTTCCAAGGCAGAGGCTGTAGCAAGATTTACGTGTGAGTTCGT ACATAGCGTGTGGCGACCATGGCATAGACAGAGAGAGCCACCTGCCAGGA TTAAAACGTGTGCTAACTACCACGGACGGGAGTGTTGAAATGCCGCCACT CACCGGACAAAGCTGCCTGATTCCTCGTTCTTCCGGTGGGTTCTCAAAAG TATCCGCCCCGTGTATATTCGGCCCCTCACTAAACACCAACCCAACACTC TCCCCGCCTCTCCCCCCCTACCCTTTACCAAAACACTACCTACCGACCAG GTGCTCGTGTCGATGCTGTCTACGGCGTACGAGGCACACTTCAACGCGCC GCTCTTCTACCGAGAGCTCCAGAACAACACGGTGCCGCGGTACAGCAAGA TGGTCTCCACGTCTTTCCTCGCGAGCGTGGTCACGATGACGGCGGTACGT ACATGCTAG
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Coding sequence (CDS) from alignment at S-firma_M_contig926:22973..26281+

>mRNA_S-firma_M_contig926.20209.1 ID=mRNA_S-firma_M_contig926.20209.1|Name=mRNA_S-firma_M_contig926.20209.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1644bp|location=Sequence derived from alignment at S-firma_M_contig926:22973..26281+ (Sphaerotrichia firma Sfir_13m male)
ATGTCGGGCGGCGGAGAAGGGGGGCAGATGTCGGGCGGCGGAGAAGGGGG
GCAGGTCGCCGGTGAGGAGGCGGACAAGTCTAGCATGTCAGCGTCGGTTT
TCAACCTCGCCAAGAACATCCTCGGCGCGGGGATGCTCTCACTGCCGAGC
GGCGTTGCTGCGTTTTCGGATTCCAGGTCGCCGGTGAGGAGGCGGACAAG
TCTAGCATGTCAGCGTCGGTTTTCAACCTCGCCAAGAACATCCTCGGCGC
GGGGATGCTCTCACTGCCGAGCGGCGTTGCTGCGTTTTCGGATTCCAGGA
AGGCCATCGTCCCCGCCGCCCTCATCATCGCCGCGCTGGGCGCTGTGTCC
GCCTACACGTTCGTGCTGATCGGCCGCTCGTGCGCCGAGACCGGGGCGGA
GTCCTACGAGCAGTCGTGGGCGCGCACGGTGGGGCAGAAGTCGGCGTGGA
TGCCGGCCGGGGCGTGCGTGGCCACGTGCTTCGCGGGGTGCCTGGCCTTC
ACGCTCATCATCGGGGACAGCTTCTCGTCTCTGGCGAAGACCTTCGGGGC
GCCGGCGGTGGTGGCCAACCGGTCGAACATCATCATGGCTGTCTCGGCGG
TGGTGCTCCTGCCTCTGTCGCTCCTGAAAAGAAGGCCATCGTCCCCGCCG
CCCTCATCATCGCCGCGCTGGGCGCTGTGTCCGCCTACACGTTCGTGCTG
ATCGGCCGCTCGTGCGCCGAGACCGGGGCGGAGTCCTACGAGCAGTCGTG
GGCGCGCACGGTGGGGCAGAAGTCGGCGTGGATGCCGGCCGGGGCGTGCG
TGGCCACGTGCTTCGCGGGGTGCCTGGCCTTCACGCTCATCATCGGGGAC
AGCTTCTCGTCTCTGGCGAAGACCTTCGGGGCGCCGGCGGTGGTGGCCAA
CCGGTCGAACATCATCATGGCTGTCTCGGCGGTGGTGCTCCTGCCTCTGT
CGCTCCTGAAAAACCTCAAGTCTCTCGGATTCACGAGCATGTTGGGGACG
TCGGGCCTTATCTACACCGCCGTGATGATGGCCATTCGTTTCTTTGACGG
CTCTTACGCGGCGGGGGGCAAGTTCCACGCGCTGCTCCCGGCGGGCGGGG
CCCCCGTGTTCGGCGTCAAGGGCACCAACCCCATCTGTTTCCTGACCTCA
AGTCTCTCGGATTCACGAGCATGTTGGGGACGTCGGGCCTTATCTACACC
GCCGTGATGATGGCCATTCGTTTCTTTGACGGCTCTTACGCGGCGGGGGG
CAAGTTCCACGCGCTGCTCCCGGCGGGCGGGGCCCCCGTGTTCGGCGTCA
AGGGCACCAACCCCATCTGTTTCCTGGTGCTCGTGTCGATGCTGTCTACG
GCGTACGAGGCACACTTCAACGCGCCGCTCTTCTACCGAGAGCTCCAGAA
CAACACGGTGCCGCGGTACAGCAAGATGGTCTCCACGTCTTTCCTCGCGA
GCGTGGTCACGATGACGGCGGTACGTACATGCTAGGTGCTCGTGTCGATG
CTGTCTACGGCGTACGAGGCACACTTCAACGCGCCGCTCTTCTACCGAGA
GCTCCAGAACAACACGGTGCCGCGGTACAGCAAGATGGTCTCCACGTCTT
TCCTCGCGAGCGTGGTCACGATGACGGCGGTACGTACATGCTAG
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