mRNA_S-firma_M_contig9218.20163.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9218.20163.1
Unique NamemRNA_S-firma_M_contig9218.20163.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9218.20163.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 4.530e-57
Identity = 104/120 (86.67%), Postives = 109/120 (90.83%), Query Frame = 1 
Query:    7 RNVDGTSVLEKRMERAIYEAIRSGDTEPIVGLIRAGVNPNFKRPAGETCLHAAAYCGSLELVRDLIGRSADATVKDSHGNLPVDLAAMQGKGEVVAFLQPLAPSKTPYTIAVHQRHRRAS 366
            RN DGTSVLEKRMERAIYEAIR GDTEPIVGLIRAGV+PNFKRPAGETCLHAAAYCG+L+LV+DL  R AD  VKDSHGNLPVDLAAMQGK EVV FLQPLAPSKTP+TIA HQRHRR S
Sbjct:  876 RNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSKTPFTIAAHQRHRRVS 995
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BLAST of mRNA_S-firma_M_contig9218.20163.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 8.050e-56
Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 1 
Query:    7 RNVDGTSVLEKRMERAIYEAIRSGDTEPIVGLIRAGVNPNFKRPAGETCLHAAAYCGSLELVRDLIGRSADATVKDSHGNLPVDLAAMQGKGEVVAFLQPLAPSKTPYTIA 339
            RN DGTSVLEKRMERAIYEAIR GDTEPIVGLIRAGV+PNFKRPAGETCLHAAAYCG+L+LV+DL  R AD  VKDSHGNLPVDLAAMQGK  VV FLQPLAPSKTP+TIA
Sbjct:  165 RNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSKTPFTIA 275
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BLAST of mRNA_S-firma_M_contig9218.20163.1 vs. uniprot
Match: A0A7S3NJJ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJJ4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.470e-12
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:   25 SVLEKRMERAIYEAIRSGDTEPIVGLIRAGVNPNFKRPAGETCLHAAAYCGSLELVRDLIGRSADATVKDSHGNLPVDLAAMQGKGEVVAFLQPL 309
            S+L KRM+RAI++A RS + EP++ L+  G + N+ R + ET L AAAYCG  ++ + L+   AD    DS GN  V LA +QG  ++  ++  L
Sbjct:  471 SILAKRMDRAIWDAFRSAEFEPLLSLLDHGASANYSRLSKETALMAAAYCGRDDVAKRLLELGADPEATDSQGNTAVTLARVQGHNQLAEYIHGL 565
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BLAST of mRNA_S-firma_M_contig9218.20163.1 vs. uniprot
Match: A0A8C6Q2K7_NOTFU (Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) n=3 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6Q2K7_NOTFU)

HSP 1 Score: 53.5 bits (127), Expect = 7.440e-5
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:   40 RMERAIYEAIRSGDTEPIVGLIRAGVNPNFKRPA-GETCLHAAAYCGSLELVRDLIGRSADATVKDSHGNLPVDLAAMQGKGEVVAFLQPLAPSKTPYT 333
            R +R   + ++ G+T  +  L++ G NPN + P    T  H AA  G ++ V  LI   AD  + D   NLP+ LAA +G  EVV  L  L    T  T
Sbjct:   35 RYKRTPLQVVKLGNTPLVRTLLQNGANPNKRDPVLNLTVTHDAAREGFVDSVHALIDNGADVNLVDDDLNLPLHLAAREGHLEVVRLLLGLTADPTATT 133
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9218.20163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KU86_9PHAE4.530e-5786.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD31_ECTSI8.050e-5686.49Ankyrin repeat-containing protein, putative n=1 Ta... [more]
A0A7S3NJJ4_9STRA1.470e-1241.05Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8C6Q2K7_NOTFU7.440e-535.35Cyclin-dependent kinase inhibitor 2C (p18, inhibit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9218contigS-firma_M_contig9218:698..2145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue1e-06
Seed eggNOG ortholog8128.ENSONIP00000002517
Preferred nameCDKN2C
KEGG koko:K06622
KEGG Pathwayko01522,ko04110,ko04934,ko05166,ko05202,map01522,map04110,map04934,map05166,map05202
GOsGO:0000079,GO:0000082,GO:0000278,GO:0001558,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0004861,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006469,GO:0007049,GO:0007050,GO:0007346,GO:0008150,GO:0008285,GO:0009892,GO:0009987,GO:0010563,GO:0010564,GO:0010605,GO:0016538,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0030234,GO:0030291,GO:0030308,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031657,GO:0031658,GO:0032268,GO:0032269,GO:0033673,GO:0040008,GO:0042127,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045736,GO:0045786,GO:0045859,GO:0045926,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0071900,GO:0071901,GO:0080090,GO:0098772,GO:1901987,GO:1901990,GO:1902806,GO:1903047,GO:1904029,GO:1904030,GO:2000045
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase inhibitor activity
EggNOG OGs38FR0@33154,3BNF7@33208,3D3MJ@33213,48BZI@7711,COG0666@1,KOG0504@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_000240.1
Exons2
Model size1370
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9218.20163.1prot_S-firma_M_contig9218.20163.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9218 740..1555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.0514119-UTR-S-firma_M_contig9218:697..7391622828749.0514119-UTR-S-firma_M_contig9218:697..739Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9218 698..739 +
1697105138.9946864-UTR-S-firma_M_contig9218:697..7391697105138.9946864-UTR-S-firma_M_contig9218:697..739Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9218 698..739 +
1622828749.0936885-UTR-S-firma_M_contig9218:1555..21451622828749.0936885-UTR-S-firma_M_contig9218:1555..2145Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9218 1556..2145 +
1697105139.0272896-UTR-S-firma_M_contig9218:1555..21451697105139.0272896-UTR-S-firma_M_contig9218:1555..2145Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9218 1556..2145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.066066-CDS-S-firma_M_contig9218:739..12491622828749.066066-CDS-S-firma_M_contig9218:739..1249Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9218 740..1249 +
1697105139.007576-CDS-S-firma_M_contig9218:739..12491697105139.007576-CDS-S-firma_M_contig9218:739..1249Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9218 740..1249 +
1622828749.0816686-CDS-S-firma_M_contig9218:1327..15551622828749.0816686-CDS-S-firma_M_contig9218:1327..1555Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9218 1328..1555 +
1697105139.0176213-CDS-S-firma_M_contig9218:1327..15551697105139.0176213-CDS-S-firma_M_contig9218:1327..1555Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9218 1328..1555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9218.20163.1

>prot_S-firma_M_contig9218.20163.1 ID=prot_S-firma_M_contig9218.20163.1|Name=mRNA_S-firma_M_contig9218.20163.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=246bp
MERAIYEAIRSGDTEPIVGLIRAGVNPNFKRPAGETCLHAAAYCGSLELV
RDLIGRSADATVKDSHGNLPVDLAAMQGKGEVVAFLQPLAPSKTPYTIAV
HQRHRRASQEQKQKQQEKEQQEKKQQQQQQLQQQQQQQQAMLPAPPRLHQ
AVVGFLPPPPPLPPHHPQLQQQQQQQQQQQQQQQQQQQQQQLQQRPPLFA
PPPMLPLQYHVQYHPPQQQPQPQPQPQPQPQPQRNKSAGGGSTTA*
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mRNA from alignment at S-firma_M_contig9218:698..2145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9218.20163.1 ID=mRNA_S-firma_M_contig9218.20163.1|Name=mRNA_S-firma_M_contig9218.20163.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1448bp|location=Sequence derived from alignment at S-firma_M_contig9218:698..2145+ (Sphaerotrichia firma Sfir_13m male)
ATCGACAGGAACGTAGACGGCACGAGCGTGCTCGAGAAGCGGATGGAGCG
TGCGATCTACGAAGCCATCCGCTCGGGGGACACGGAGCCCATCGTCGGTC
TCATCCGCGCCGGGGTCAACCCCAACTTCAAGCGTCCGGCGGGAGAGACG
TGTCTCCACGCCGCCGCCTACTGCGGGTCGCTCGAGCTGGTGAGGGACCT
GATCGGCCGCAGCGCGGACGCCACCGTGAAGGACTCCCACGGGAATCTCC
CGGTGGACTTGGCGGCGATGCAGGGCAAGGGCGAGGTGGTGGCGTTTCTG
CAGCCGCTTGCCCCTTCCAAGACGCCCTACACCATCGCCGTGCACCAGCG
GCATCGCCGCGCTTCGCAGGAGCAGAAGCAGAAGCAGCAGGAGAAGGAGC
AGCAGGAGAAGAAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAGCAGCAG
CAGCAGCAGGCGATGCTTCCCGCCCCCCCACGACTACATCAGGCGGTGGT
AGGCTTTCTGCCGCCGCCGCCCCCTCTACCACCGCACCACCCGCAGCTCC
AAGTGTTCCAACCACAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCCAGC
AACGCCCTCCTTTGTTTGCCCCGCCTCCCATGCTGCCCCTGCAGTATCAC
GTGCAGTACCACCCTCCACAGCAGCAACCGCAACCGCAGCCGCAACCGCA
ACCGCAGCCGCAACCGCAACGCAATAAGAGCGCGGGGGGGGGGAGCACCA
CAGCCTGAGCAGCGGTAGCACGTATGTTCATGCTGCGCGTGCCAAAATCT
TGATACCGATTGATGCTGACGATTTAAGGGCGACGACGTCGGCGCCGAGT
GCGCGAGCCAGCCGCGCCGAAGGGGGCGCACAGACAGGGCAGAGACGAGA
CCGGAGAGAAGAGTCATTTTTTTTTTTAACCTTTTACAAAATTAAACCTA
ACCGCGTTCCCTTGATTGTGTCCGTGTGTTGATGTCGTGTGTGTGCCGCT
GCCGTTTCAAGCGCTTCAAGCGATTCAAACGTTTCAAGCGTTTCAAGCGG
AGGAATCGTTCGTGGTGCTCACTCGTAGATGAATGAATGCAGTTAAGAGA
GTCCTTCCTCCCTGCTTTGTGGCTCTGTTGTTGGTGGGCAATGCGATCTC
GGCTGCCTGCGTCATATAGTGGTGTGGAACGGTTCGACTCCTCCTGTCGG
TGGGATGGGTGTGTTTCATCATATTTTGACGATCGATACATTCCTCCTCA
AGCCACCTGTTTCTGGCGTGGTACGTATGCACATCAACGCCGTGGCAGAG
ACATGGAAATAGGAAAATGACAAAACGACATAGGCTGAGCACTTCGGC
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Coding sequence (CDS) from alignment at S-firma_M_contig9218:698..2145+

>mRNA_S-firma_M_contig9218.20163.1 ID=mRNA_S-firma_M_contig9218.20163.1|Name=mRNA_S-firma_M_contig9218.20163.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1476bp|location=Sequence derived from alignment at S-firma_M_contig9218:698..2145+ (Sphaerotrichia firma Sfir_13m male)
ATGGAGCGTGCGATCTACGAAGCCATCCGCTCGGGGGACACGGAGCCCAT
CGTCGGTCTCATCCGCGCCGGGGTCAACCCCAACTTCAAGCGTCCGGCGG
GAGAGACGTGTCTCCACGCCGCCGCCTACTGCGGGTCGCTCGAGCTGGTG
AGGGACCTGATCGGCCGCAGCGCGGACGCCACCGTGAAGGACTCCCACGG
GAATCTCCCGGTGGACTTGGCGGCGATGCAGGGCAAGGGCGAGGTGGTGG
CGTTTCTGCAGCCGCTTGCCCCTTCCAAGACGCCCTACACCATCGCCGTG
CACCAGCGGCATCGCCGCGCTTCGCAGGAGCAGAAGCAGAAGCAGCAGGA
GAAGGAGCAGCAGGAGAAGAAGCAGCAGCAGCAGCAGCAGCTGCAGCAGC
AGCAGCAGCAGCAGCAGGCGATGCTTCCCGCCCCCCCACGACTACATCAG
GCGGTGGTAGGCTTTCTGCCGCCGCCGCCCCCTCTACCACCGCACCACCC
GCAGCTCCAAATGGAGCGTGCGATCTACGAAGCCATCCGCTCGGGGGACA
CGGAGCCCATCGTCGGTCTCATCCGCGCCGGGGTCAACCCCAACTTCAAG
CGTCCGGCGGGAGAGACGTGTCTCCACGCCGCCGCCTACTGCGGGTCGCT
CGAGCTGGTGAGGGACCTGATCGGCCGCAGCGCGGACGCCACCGTGAAGG
ACTCCCACGGGAATCTCCCGGTGGACTTGGCGGCGATGCAGGGCAAGGGC
GAGGTGGTGGCGTTTCTGCAGCCGCTTGCCCCTTCCAAGACGCCCTACAC
CATCGCCGTGCACCAGCGGCATCGCCGCGCTTCGCAGGAGCAGAAGCAGA
AGCAGCAGGAGAAGGAGCAGCAGGAGAAGAAGCAGCAGCAGCAGCAGCAG
CTGCAGCAGCAGCAGCAGCAGCAGCAGGCGATGCTTCCCGCCCCCCCACG
ACTACATCAGGCGGTGGTAGGCTTTCTGCCGCCGCCGCCCCCTCTACCAC
CGCACCACCCGCAGCTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCCAGCAACGCCCTCC
TTTGTTTGCCCCGCCTCCCATGCTGCCCCTGCAGTATCACGTGCAGTACC
ACCCTCCACAGCAGCAACCGCAACCGCAGCCGCAACCGCAACCGCAGCCG
CAACCGCAACGCAATAAGAGCGCGGGGGGGGGGAGCACCACAGCCTGACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCTCCAGCAACGCCCTCCTTTGTTTGCCCCGCCTCCCATG
CTGCCCCTGCAGTATCACGTGCAGTACCACCCTCCACAGCAGCAACCGCA
ACCGCAGCCGCAACCGCAACCGCAGCCGCAACCGCAACGCAATAAGAGCG
CGGGGGGGGGGAGCACCACAGCCTGA
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