mRNA_S-firma_M_contig9203.20155.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9203.20155.1
Unique NamemRNA_S-firma_M_contig9203.20155.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: D8LR70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR70_ECTSI)

HSP 1 Score: 403 bits (1036), Expect = 3.510e-137
Identity = 239/269 (88.85%), Postives = 243/269 (90.33%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXX-------------GAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDH-FLGEGTEER 765
            GLEV D VCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSS DMDVR+EAGENLALLHESRIILGLVG G   +    XXXXXXXXXXXXXXXXX             GAAEMEAMDLTVLWEEVVEE+KGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALR+CLQSGFQTQMQSNELLREILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDH FLGEG EER
Sbjct:  209 GLEVTDKVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSPDMDVRIEAGENLALLHESRIILGLVGGGEGGSADWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEMKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQTQMQSNELLREILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHIFLGEGAEER 477          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A835YVX4_9STRA (Interferon-related developmental regulator-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.700e-34
Identity = 93/250 (37.20%), Postives = 132/250 (52.80%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSS-ADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPE-EVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
            G EV D V AAAL GW LLAT   R W+     +  L   R+LL+  A +DVR  AGE  AL+             A                         AA  E  D+  LW+E+ + ++G+ T++SK++S++TKK QRRTFR L A + E  PP  + +SLQ+ ++ +  WA + +L ALRACL  G Q+Q   N  +R+ILG    GG  G  P  +K+   RK ++ +R+R R S+Q A+D FL
Sbjct:  236 GTEVTDDVAAAALRGWCLLATAGPREWLGGPALEALLPAVRDLLAGGASLDVREAAGEAAALMXXXXXXXXXXQAEAGIEE---------------------AAAEEYSDVETLWQEIGDLMQGYSTETSKRMSKDTKKSQRRTFRDLHAAVVEGAPPPWQELSLQSCAVEITTWAELVRLEALRACLHGGLQSQAAHNATVRDILGAVDGGGAAGGTPALAKSGGARKYRSETRSRQRASRQNAKDSFL 464          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S2XZE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZE4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.440e-31
Identity = 87/251 (34.66%), Postives = 137/251 (54.58%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGV---SKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
            G+ V D V  AALS WGLLATT++  +V      + LR     L   DM VRM AGEN AL+HE +  +  V +    A                     G AE+        W+E++  ++    +SSK++S++ +K+ R TFR+++A+I E++ P E + +  G++ +  WAHI Q++ALR  ++ GFQ Q+Q N +LREILG    +        +  Y+K+S+ +K +TT RT+ R ++Q  +D FL
Sbjct:  213 GVMVTDEVIPAALSCWGLLATTLTTEFVHQTAGPRVLRTLLAFLEHGDMSVRMAAGENAALIHECK--MKKVHELEALAEEKQLDEAEAEELIHQADDEQGIAEV--------WDEIIARMEDLRGESSKRISKKNRKEVRATFREIYASIVEDDNPSEQLQVVGGTIRLNTWAHIVQVDALRNTMRGGFQIQLQVNPILREILGECFQNDGVSMVDRRANYAKSSDWQKYKTTERTKQRKARQNQRDVFL 453          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S2XRI7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRI7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.330e-24
Identity = 79/257 (30.74%), Postives = 125/257 (48.64%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQH-----LRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILG----VSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
            G   P ++ A AL  W LL+TT+  + +A            L + ++ L+   +D+R  AGE +AL+HESR+ LG+V DG  +                           +  +  V+ +EV + +     +S   +S++ KK+QR TFR+  ATI  +E P E VS++ GS+T+  W  + QLN +R CLQ GFQ  +  N  LR + G    VS       ++   SK S+  K    + TR R ++   ++HFL
Sbjct:  152 GDVTPATLRATALDCWALLSTTLHDATLAGNSEGVGRGVVLLPLLQQCLNHTSVDLRSAAGECVALIHESRLNLGIVEDGNESTPTNTTERRFRR------------GSWDGSEWEVMMDEVKQRVAELSNESGHHMSKKAKKEQRATFREFMATIVNDEAPHEEVSVRGGSITLRSWRQVIQLNFIRHCLQGGFQNHLMFNSTLRIMFGITFTVSDRNSQLEKRLLLSKTSDAAKLADKNLTRQRRTRTNVKNHFL 396          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S0PVU5_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PVU5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.090e-23
Identity = 74/252 (29.37%), Postives = 126/252 (50.00%), Query Frame = 1
Query:   28 AAALSGWGLLATTVSRSWVA------TRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVS-KWGGTGG------EKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
            A AL  W LL+TT+  +++A      T    Q L +    L    +++R  AGE +AL+HESR+ LG+  +    A                          +  +  V+ +EV + +     +S + +S++ KK+QR TFR+  ATI ++EPP+EV++ + G+L +  W  + QLN +R CLQ GFQ Q+ +N+ L  I G   +  G         ++  +SK S+  K    + T++R ++   ++HFL
Sbjct:  182 ATALDCWALLSTTIHDAFIAGDDDFQTGRGLQILPLLSNCLDHTSVELRSAAGECVALIHESRLKLGVEKEDCDNASDRRYRR----------------GSWDGSEWEVIMDEVKQRVAELSVESGRHMSKKAKKEQRATFREFMATIVDDEPPKEVITFRGGTLELNSWKEVVQLNFIRHCLQGGFQIQLLTNDTLHAIFGADGRMLGNAQTLSQLEKRMIFSKTSDAAKAADQNMTKNRRNRNNVKNHFL 417          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S1YWK5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YWK5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.450e-23
Identity = 79/264 (29.92%), Postives = 131/264 (49.62%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLR-------VFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKW---GGTGG------EKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
            G +V   + A AL  W LL++TV+ +++A    ++ L        +    L+S++M++R  AGE +AL+HESR+ LG+  D    A                          +  +  VL +EV + +     +S + +S++ KK+QR TFR   ATI ++EPP EVV+ + G++T+  W  I ++N +R CLQ GFQ Q+ +NE L  I  +        TG       ++   SK SE  K      TR R ++   +++F+
Sbjct:   80 GEDVSPCLRAIALDCWALLSSTVADAYLAGDEMEEDLGRGLVILPLLSTCLNSSNMELRCAAGECVALIHESRLNLGIDEDEGENASERRFRR----------------GSWDGSEWEVLMDEVKQRVAELSVESGRHMSKKAKKEQRATFRDFMATIVDDEPPVEVVNFRGGTVTLRTWREIIEINFVRHCLQGGFQIQLMTNETLHMIFDIDASTINDATGAALSQLEKRLTMSKTSEAAKAADLDMTRRRRTRTNVKNYFI 327          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: B8CFC4_THAPS (IFRD domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFC4_THAPS)

HSP 1 Score: 107 bits (267), Expect = 5.250e-23
Identity = 81/261 (31.03%), Postives = 128/261 (49.04%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELL---------SSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGV---SKWGGTGGEKPFY-SKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
            G +V   + A AL  W LL+TT+  + +A    +  + + R LL          S D+ +R  AGE +A++HESR+ LG+    A  A                          +  +  +L +E+ + +     +S   +S+++KK+QR TFR    TI ++E PEEVV+ + G L +  W  I QLN +R CLQSGFQ Q+ +NE L ++ G    S  G +  EK  Y SK S   K    + T+ R ++   ++HF+
Sbjct:  251 GEKVSPLLRATALDCWALLSTTLHDAHIAAGDAEDTVALGRGLLLLPLLANCLESNDVGLRSSAGELVAMIHESRLNLGMDEGEAENATERRFRR----------------GSWDGSEWEILMDEIKQRVAELSVESGHHMSKKSKKEQRATFRDFMNTIVDDESPEEVVNFRGGKLRITSWKEIIQLNFVRHCLQSGFQIQLMTNETLHDVFGAVFSSAAGLSQLEKRMYMSKTSAKSKAVDRAMTKQRRTRTNVKNHFI 495          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S2H1J3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H1J3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.830e-22
Identity = 78/267 (29.21%), Postives = 128/267 (47.94%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQH----------LRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWGGTGGE---------KPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
            G +V  ++ A AL  W LL+TTV  +++A                 L +  + L+ +++++R  AGE +AL+HESR+ LG+  D    A                          +  +  VL +EV + +     +S + +S++ KK+QR TFR   ATI ++EPP EVV+ + G+L +  W  I Q+N +R CLQ GFQ Q+ +NE L  +  +        E         +   SK S+V K      TR R ++  A+++F+
Sbjct:  244 GEDVCPTLRAIALDCWALLSTTVDDAYIAGDELGSETGENGRGVVILPLLSQCLNESNVELRCAAGECVALIHESRLNLGIDDDEGENASERRFRR----------------GSWDGSEWEVLMDEVKQRVAELSVESGRHMSKKAKKEQRATFRDFMATIVDDEPPVEVVNFRGGTLNLKSWREIVQINFVRHCLQGGFQIQLMTNETLHMVFNIDAAIINDAEGASLSQLEKRLIMSKTSDVAKAADRDLTRRRRNRTNAKNYFI 494          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A4D9DHN1_9STRA (IFRD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHN1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.060e-21
Identity = 74/252 (29.37%), Postives = 121/252 (48.02%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWG-GTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFLGEG 753
            G    + + AA +  W LL T   R +         L  F  LL ++  D+R+ AGE +ALL E     GL                              A E E +D       +V+ ++    + SK++SR+ KK QR +FR++ + + + + PEEV+S +  S  +  W  +KQ+ ALR CLQ GF T +  N ++ +I  +         E+   +KNSE+ + +TT+R+R+R S+++A+ HF  EG
Sbjct:  175 GGRASEELKAAGVDAWSLLFTVAPRGYNTHESRALLLENFLPLLDASSADLRVAAGEAIALLREHWRQEGLA------------------------VHDVSADEEEVVD------SIVDRLQDMAREGSKRMSRKDKKAQRASFREICSAVVDGQHPEEVISYRTRSFRLTSWVKMKQVEALRDCLQGGFLTALAQNTVIHDIFDLDPTAFDVPVERSVVAKNSELGRWRTTTRSRNRRSREKAKHHFTEEG 396          
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: K8YQM7_NANGC (Nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQM7_NANGC)

HSP 1 Score: 102 bits (255), Expect = 3.710e-21
Identity = 74/252 (29.37%), Postives = 121/252 (48.02%), Query Frame = 1
Query:    1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWG-GTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFLGEG 753
            G    + + AA +  W LL T   R +         L  F  LL ++  D+R+ AGE +ALL E     GL                              A E E +D       +V+ ++    + SK++SR+ KK QR +FR++ + + + + PEEV+S +  S  +  W  +KQ+ ALR CLQ GF T +  N ++ +I  +         E+   +KNSE+ + +TT+R+R+R S+++A+ HF  EG
Sbjct:  790 GGRASEELKAAGVDAWSLLFTVAPRGYNTHESRALLLENFLPLLDASSADLRVAAGEAIALLREHWRQEGLA------------------------VHDVSADEEEVVD------SIVDRLQDMAREGSKRMSRKDKKAQRASFREICSAVVDGQRPEEVISYRTRSFRLTSWVKMKQVEALRDCLQGGFLTALAQNTVIHDIFDLDPTAFDVPVERSVVAKNSELGRWRTTTRSRNRRSREKAKHHFTEEG 1011          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR70_ECTSI3.510e-13788.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVX4_9STRA1.700e-3437.20Interferon-related developmental regulator-domain-... [more]
A0A7S2XZE4_9STRA1.440e-3134.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2XRI7_9STRA6.330e-2430.74Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0PVU5_9STRA2.090e-2329.37Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S1YWK5_9STRA2.450e-2329.92Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8CFC4_THAPS5.250e-2331.03IFRD domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S2H1J3_9STRA1.830e-2229.21Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A4D9DHN1_9STRA1.060e-2129.37IFRD domain-containing protein n=2 Tax=Monodopsida... [more]
K8YQM7_NANGC3.710e-2129.37Nadh:ubiquinone oxidoreductase complex i intermedi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9203contigS-firma_M_contig9203:2469..4077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.5
Seed ortholog evalue4.5e-111
Seed eggNOG ortholog2880.D8LR70
Preferred nameIFRD1
GOsGO:0001085,GO:0001558,GO:0001709,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006950,GO:0007275,GO:0007399,GO:0007405,GO:0007518,GO:0008134,GO:0008150,GO:0008283,GO:0008361,GO:0009611,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0014009,GO:0014706,GO:0016043,GO:0019219,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030308,GO:0030516,GO:0030517,GO:0031099,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031345,GO:0032501,GO:0032502,GO:0032535,GO:0040007,GO:0040008,GO:0042060,GO:0042063,GO:0042246,GO:0042692,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043403,GO:0044093,GO:0044424,GO:0044464,GO:0045165,GO:0045445,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045893,GO:0045926,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048625,GO:0048638,GO:0048640,GO:0048670,GO:0048671,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050770,GO:0050771,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0060537,GO:0061061,GO:0061351,GO:0061387,GO:0061629,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0072089,GO:0080090,GO:0090066,GO:0120035,GO:1902680,GO:1903506,GO:1903508,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II sequence-specific DNA-binding transcription factor binding
EggNOG OGsKOG2842@1,KOG2842@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionInterferon-related developmental regulator, N-terminal
Ec32 orthologEc-06_004140.1
Exons3
Model size768
Cds size768
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9203.20155.1prot_S-firma_M_contig9203.20155.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9203 2469..4077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828748.0454674-CDS-S-firma_M_contig9203:2468..26631622828748.0454674-CDS-S-firma_M_contig9203:2468..2663Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9203 2469..2663 -
1697105138.3745933-CDS-S-firma_M_contig9203:2468..26631697105138.3745933-CDS-S-firma_M_contig9203:2468..2663Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9203 2469..2663 -
1622828748.0628452-CDS-S-firma_M_contig9203:2978..31581622828748.0628452-CDS-S-firma_M_contig9203:2978..3158Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9203 2979..3158 -
1697105138.3877232-CDS-S-firma_M_contig9203:2978..31581697105138.3877232-CDS-S-firma_M_contig9203:2978..3158Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9203 2979..3158 -
1622828748.0819554-CDS-S-firma_M_contig9203:3684..40771622828748.0819554-CDS-S-firma_M_contig9203:3684..4077Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9203 3685..4077 -
1697105138.3983002-CDS-S-firma_M_contig9203:3684..40771697105138.3983002-CDS-S-firma_M_contig9203:3684..4077Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9203 3685..4077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9203.20155.1

>prot_S-firma_M_contig9203.20155.1 ID=prot_S-firma_M_contig9203.20155.1|Name=mRNA_S-firma_M_contig9203.20155.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=256bp
GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMD
VRMEAGENLALLHESRIILGLVGDGATAAGGGGQEEAGGEDDLEDQDDDD
GAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFAT
IGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELL
REILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFLGE
GTEER*
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mRNA from alignment at S-firma_M_contig9203:2469..4077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9203.20155.1 ID=mRNA_S-firma_M_contig9203.20155.1|Name=mRNA_S-firma_M_contig9203.20155.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1609bp|location=Sequence derived from alignment at S-firma_M_contig9203:2469..4077- (Sphaerotrichia firma Sfir_13m male)
GGGTTGGAGGTGCCAGACTCGGTGTGCGCGGCGGCGCTGTCCGGGTGGGG GCTCCTCGCCACGACGGTGTCCCGCTCCTGGGTGGCCACAAGAATGACCA AGCAGCACCTCAGAGTCTTCAGAGAGCTCCTTTCGAGCGCCGACATGGAC GTGCGGATGGAGGCCGGGGAAAACCTTGCCCTCCTCCACGAGAGCCGGAT TATCCTGGGGCTGGTCGGGGACGGGGCGACGGCGGCCGGGGGTGGGGGGC AGGAGGAGGCAGGAGGGGAGGATGATCTGGAGGACCAGGATGACGATGAT GGGGCGGCGGAGATGGAGGCCATGGATTTGACGGTGCTGTGGGAGGAGGT GGTAGAGGAGATTAAGGGGTTCATCACCGATAGCAGCAAGAAGGTGCGGA AGCGGTGGGTTGGGGCGTGAGGAGGGCTGGTTTTGGTTGTTGATCGCAAG CGTGCTCTCTCGTAGGCTGGTGTGTAATACAGTCGACCACAACTTGTGTT GGGCGCAACATGCCACATGTTGGACGCGTCATGAACAACGTGCAACCGTT GGACATGCTTTTCCCACCATAGGGCAAACGAGTGTCAGCGTGTAGCGGCT GGGTACGCTCAAAACGGGGCTCTCAGGATTTTGCGTTTGGTTGCCCAGGA TTGTCTGATCCACAGAGTTCTTTGCGTCGTATTCGGTTTGGCGAAGCGAC GACGAAGGTGATGACTAAATGGCAGCCTGGCTCGGCATGAAAACGGCGTA ATGTATCGCTCGAGCATCGTCGTGATGCAAAATGTTGCTCCTGCGACTGC TGATGCACGGCTGTTATAGCATGTTCACAACCCCCCCCGTCCCTGTTCCT CGTGTTGTCGTCACTGTTGTCCGAACCCGAACTGCTGCCTTCTGGCGTGA TCGATCTCGCGCGCAACAGCTGAGCCGGGAGACCAAGAAGCAGCAGCGCC GAACGTTCCGGCAGCTGTTCGCGACGATCGGGGAGAACGAGCCCCCCGAG GAGGTGGTGAGCCTCCAGAACGGCAGCCTCACCGTGGCGGATTGGGCGCA CATCAAGCAGCTCAACGCGCTCCGAGCCTGCCTGCAGAGTGGCTTCCAGG TCAGAGAGGATGGTCGCCTTGTTCCGCTTCGATTCACCAGCAGCGTCTAA CTTGCAGCTGAGCAGTTGTGGATTTTGGTGCTAGTTGGGACGCGTCCTGC GATCCGCCAAGTAGGTGACAACCAAGACCCTGTCCACGTCTGCTTTAGTC TGGACGCTTCGAAGCCTACTTCGAAGCGCGAGCCTTTTACAAACACACCC GCCGCGCGTGAAAGCTGCGATGGTCTCCAGCACCTGGCGCTCTGACTGCA CGCACGATAGATAGATACACTTGCCTTCCTTCTCCCTTCGACGATCCCGT TTTGCTGCGCGCAGACCCAGATGCAGAGCAACGAGCTCCTCCGGGAGATA TTGGGGGTTTCCAAGTGGGGGGGCACGGGGGGCGAGAAGCCCTTCTACTC GAAGAACAGCGAGGTGCGCAAGCAGCAGACGACGAGCCGCACGCGGTCCA GGCACAGCAAGCAGGAGGCGCAGGACCACTTCTTGGGAGAGGGCACCGAG GAGCGGTGA
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Coding sequence (CDS) from alignment at S-firma_M_contig9203:2469..4077-

>mRNA_S-firma_M_contig9203.20155.1 ID=mRNA_S-firma_M_contig9203.20155.1|Name=mRNA_S-firma_M_contig9203.20155.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1536bp|location=Sequence derived from alignment at S-firma_M_contig9203:2469..4077- (Sphaerotrichia firma Sfir_13m male)
GGGTTGGAGGTGCCAGACTCGGTGTGCGCGGCGGCGCTGTCCGGGTGGGG
GCTCCTCGCCACGACGGTGTCCCGCTCCTGGGTGGCCACAAGAATGACCA
AGCAGCACCTCAGAGTCTTCAGAGAGCTCCTTTCGAGCGCCGACATGGAC
GTGCGGATGGAGGCCGGGGAAAACCTTGCCCTCCTCCACGAGAGCCGGAT
TATCCTGGGGCTGGTCGGGGACGGGGCGACGGCGGCCGGGGGTGGGGGGC
AGGAGGAGGCAGGAGGGGAGGATGATCTGGAGGACCAGGATGACGATGAT
GGGGCGGCGGAGATGGAGGCCATGGATTTGACGGTGCTGTGGGAGGAGGT
GGTAGAGGAGATTAAGGGGTTCATCACCGATAGCAGCAAGAAGGGGTTGG
AGGTGCCAGACTCGGTGTGCGCGGCGGCGCTGTCCGGGTGGGGGCTCCTC
GCCACGACGGTGTCCCGCTCCTGGGTGGCCACAAGAATGACCAAGCAGCA
CCTCAGAGTCTTCAGAGAGCTCCTTTCGAGCGCCGACATGGACGTGCGGA
TGGAGGCCGGGGAAAACCTTGCCCTCCTCCACGAGAGCCGGATTATCCTG
GGGCTGGTCGGGGACGGGGCGACGGCGGCCGGGGGTGGGGGGCAGGAGGA
GGCAGGAGGGGAGGATGATCTGGAGGACCAGGATGACGATGATGGGGCGG
CGGAGATGGAGGCCATGGATTTGACGGTGCTGTGGGAGGAGGTGGTAGAG
GAGATTAAGGGGTTCATCACCGATAGCAGCAAGAAGCTGAGCCGGGAGAC
CAAGAAGCAGCAGCGCCGAACGTTCCGGCAGCTGTTCGCGACGATCGGGG
AGAACGAGCCCCCCGAGGAGGTGGTGAGCCTCCAGAACGGCAGCCTCACC
GTGGCGGATTGGGCGCACATCAAGCAGCTCAACGCGCTCCGAGCCTGCCT
GCAGAGTGGCTTCCAGCTGAGCCGGGAGACCAAGAAGCAGCAGCGCCGAA
CGTTCCGGCAGCTGTTCGCGACGATCGGGGAGAACGAGCCCCCCGAGGAG
GTGGTGAGCCTCCAGAACGGCAGCCTCACCGTGGCGGATTGGGCGCACAT
CAAGCAGCTCAACGCGCTCCGAGCCTGCCTGCAGAGTGGCTTCCAGACCC
AGATGCAGAGCAACGAGCTCCTCCGGGAGATATTGGGGGTTTCCAAGTGG
GGGGGCACGGGGGGCGAGAAGCCCTTCTACTCGAAGAACAGCGAGGTGCG
CAAGCAGCAGACGACGAGCCGCACGCGGTCCAGGCACAGCAAGCAGGAGG
CGCAGGACCACTTCTTGGGAGAGGGCACCGAGGAGCGGTGAACCCAGATG
CAGAGCAACGAGCTCCTCCGGGAGATATTGGGGGTTTCCAAGTGGGGGGG
CACGGGGGGCGAGAAGCCCTTCTACTCGAAGAACAGCGAGGTGCGCAAGC
AGCAGACGACGAGCCGCACGCGGTCCAGGCACAGCAAGCAGGAGGCGCAG
GACCACTTCTTGGGAGAGGGCACCGAGGAGCGGTGA
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