mRNA_S-firma_M_contig9066.20006.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9066.20006.1
Unique NamemRNA_S-firma_M_contig9066.20006.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9066.20006.1 vs. uniprot
Match: D7FXL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.670e-13
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:    5 LVLRVRGPANCVEVAAEALRKLGRMETVRETLSFVKTTSPHRRLT 139
            LVL V+GP NCVEVAAEALRKLGR ETVR+ L+FVKTTSPHRRLT
Sbjct:  112 LVLLVKGPTNCVEVAAEALRKLGRKETVRDALTFVKTTSPHRRLT 156
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BLAST of mRNA_S-firma_M_contig9066.20006.1 vs. uniprot
Match: A0A6H5L596_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L596_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.100e-11
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:    5 LVLRVRGPANCVEVAAEALRKLGRMETVRETLSFVKTTSPHRRLT 139
            LVL V+GP NCVEVAAEALRKLGR ETVR+ L+FVK TSPHRRLT
Sbjct:  456 LVLLVKGPTNCVEVAAEALRKLGRKETVRDALTFVKKTSPHRRLT 500
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9066.20006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXL9_ECTSI1.670e-1384.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L596_9PHAE2.100e-1182.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9066contigS-firma_M_contig9066:226..2562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size843
Cds size840
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9066.20006.1prot_S-firma_M_contig9066.20006.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9066 226..2560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828730.7767124-CDS-S-firma_M_contig9066:225..4391622828730.7767124-CDS-S-firma_M_contig9066:225..439Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9066 226..439 +
1697105127.806129-CDS-S-firma_M_contig9066:225..4391697105127.806129-CDS-S-firma_M_contig9066:225..439Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9066 226..439 +
1622828730.788606-CDS-S-firma_M_contig9066:1483..16121622828730.788606-CDS-S-firma_M_contig9066:1483..1612Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9066 1484..1612 +
1697105127.8145077-CDS-S-firma_M_contig9066:1483..16121697105127.8145077-CDS-S-firma_M_contig9066:1483..1612Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9066 1484..1612 +
1622828730.8019087-CDS-S-firma_M_contig9066:1646..19581622828730.8019087-CDS-S-firma_M_contig9066:1646..1958Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9066 1647..1958 +
1697105127.8225288-CDS-S-firma_M_contig9066:1646..19581697105127.8225288-CDS-S-firma_M_contig9066:1646..1958Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9066 1647..1958 +
1622828730.8135896-CDS-S-firma_M_contig9066:2375..25601622828730.8135896-CDS-S-firma_M_contig9066:2375..2560Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9066 2376..2560 +
1697105127.8305771-CDS-S-firma_M_contig9066:2375..25601697105127.8305771-CDS-S-firma_M_contig9066:2375..2560Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9066 2376..2560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9066.20006.1

>prot_S-firma_M_contig9066.20006.1 ID=prot_S-firma_M_contig9066.20006.1|Name=mRNA_S-firma_M_contig9066.20006.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=280bp
GAGSAGPGPRELRGGGRRGAEEAGADGDGARDPELRQDDLAPPQAHPGAA
PGAAAAATTEAAAAAAAAAQTEQHQQQRQQQQQRRRFEGPEARRKKRRKD
QEQQQQQRQQQRQPDGPTTTTTTTTTTNNNNNNDDNDSRNSNSNSSRAPT
HHPPRQVYSAAAAAAAAAPSPRNSNRAAAGGREAAPTPPTNSSGGSNNYG
AQQHHHNHRRDGGQQGPDGAADNNSTAISGSGGGKQQQHPAPETRGGGGG
GSKKRRPQQTGGSSSSGGGRGGGREQTHHR
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mRNA from alignment at S-firma_M_contig9066:226..2562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9066.20006.1 ID=mRNA_S-firma_M_contig9066.20006.1|Name=mRNA_S-firma_M_contig9066.20006.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2337bp|location=Sequence derived from alignment at S-firma_M_contig9066:226..2562+ (Sphaerotrichia firma Sfir_13m male)
GGCGCTGGTTCTGCGGGTCCGGGGCCCCGCGAACTGCGTGGAGGTGGCCG
CCGAGGCGCTGAGGAAGCTGGGGCGGATGGAGACGGTGCGAGAGACCCTG
AGCTTCGTCAAGACGACCTCGCCCCACCGCAGGCTCACCCGGGAGCGGCG
CCTGGAGCAGCAGCAGCAGCAACAACAGAAGCAGCAGCAGCAGCAGCAGC
AGCAGCACAAACAGGTATTGATAGGCCCTTGCGTGTGCACCGGCGGATGT
CGACCCAGCCGGCATTTGTTTGTTTGGGTTAGGGGTTAGAGGTTGTGCCA
GCCAGCTCTCCTAGGCCTGCACGGTACGTGATTGTTGGGTCGGGGGGGTT
GCGGTGCTGCTACTGCGGTAGAATCGCGTGTTTGCCGTGGTACCCAGGGG
CAGCTAAGCCTTTTCCTCTCACGCTCGCCTTTCAGGGCAAATGCCCCCGT
ACTTCAAACGTGTCCTCGTGGTATCCCCGGCGGAGCTACACACAGACATG
TTCGTGGCTCTTAGCCGCTGTGTGCGCCGATTGCCGTAGTCACCGGAGCT
TTCGCACAGGGGTGTTGGTGCAGTTTTCGCCGACGAGATATCTCCACGAA
GGGGGTAGTGCCAATGTCAAAGAGCAGTTCCTTGTGGAGATCTTGACGAG
GCCTTTCCGAAAGTAGGGTTTTCTAGATCGTCCCTCACCCTCCCCTTTGT
GGAGGTGTCCGTCTCGCGGAACACGATGGCACCCCTGTGCGAACGCTCCC
ATGATTTCGGGACAAAAAGCGATCTGAACCACCAGAAACCACATGTACCA
TTTACAAATTACACTGCCCTATTGTGTACCAAGAGCAACATTTTTTACAC
TTTTGGTGACCGAAGGAAGATAACACACATACGCTGAATAACATACCCCG
TTGCAAACTACGAAACTAAACAACCAACAAGCCTAACGGATTGCGGATTG
TGTGCTGTTGGCTGGGACGGGGAGGGTTAGCGTGTATACAACAGTCCCCC
TGGAACGACTTATTCACAGGACGGACGTATACGGCTGACGAATGTAGAAA
ATTTATTAGAAAGCATTTGCCCACCCCAAAAGGCTGCCTGTTTTTCGAAG
GGCGGTTTCGATTGTGCGCCAAGCGTGGCACAGTAGTTATGAACTGGCAT
CACCCTCTAAAGCAGGTTTGTCGCCCGAAAAAGCTGTACGCGCGCCGTTG
CGGCTGACGGCGTTGTCAACTAACCTGGCGTGCTTCCCCGCCCGAACTGC
TACACCAGAACAACACCAACAGCAACGGCAACAACAGCAACAGCGTCGCC
GTTTCGAAGGGCCAGAAGCACGACGCAAGAAGAGACGGAAAGACCAGGAG
CAGCAACAACAACAACGCCAACAGCAACGACAACCCGGCAGAGAGAGGTC
AGCAGTACGCCACGAGAAGAGATGGACCCACCACCACCACCACCACCACC
ACCACCACCAACAACAACAACAACAACGACGACAACGACAGCAGGAACAG
CAACAGCAACAGCAGTAGGGCCCCAACTCATCACCCCCCACGCCAGGTCT
ATTCCGCCGCCGCGGCTGCTGCTGCCGCCGCGCCATCCCCAAGAAATAGC
AACAGGGCTGCCGCCGGGGGGCGAGAAGCGGCGCCGACCCCACCTACCAA
CAGCAGCGGTGGAAGCAACAACTACGGCGCCCAGCAGCACCACCACAACC
ACCGACGAGACGGAGGGCAGCAGGGCCCTGACGGTGAGCAAGCACGTCGA
GCTCTCGAGTGCATAACAGTTTGTCGCAGAGGACGCGCCACGTGTGTGCA
GCAGTGCCGTACGTTCGAAGCCTTGACTCCTCGCCAGGTGTTTGTTCGAC
GTCGAGCTCGAGCTAGGTCTCAGTATTCTCTTCTTCTGCCCGGCCCCTCC
ACCCACAGCCTGTCTTTGCGTGATATTTTCAGGAGGTGTCCTCAGCCCCA
CCCCTTGGTCCCGGCGCTCCTCCCTCCTCCGCCCCGGGGGGTCCGTCGGA
CGCCAGGCTTTCCCCCCCTCCCCGTTTTGTTTCGAAAACGAACCGTGCCT
TGAAGCGCAACTACTGTTCTGGAAAAAAACTTCCAAACGTTTTTTGCGGG
GGGGCTAACTCCCTATCTGCCCCGTCCGATTTCTCTCTGTTGCAATCCAG
GCGCGGCAGACAACAACTCGACAGCAATCAGTGGGTCCGGGGGCGGAAAA
CAGCAGCAGCATCCGGCCCCGGAAACGAGGGGCGGCGGCGGCGGCGGCTC
CAAAAAGCGGCGCCCACAACAAACGGGCGGTAGCAGCAGCAGCGGTGGTG
GCAGGGGTGGGGGCAGAGAACAAACGCATCACCGGTC
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Coding sequence (CDS) from alignment at S-firma_M_contig9066:226..2562+

>mRNA_S-firma_M_contig9066.20006.1 ID=mRNA_S-firma_M_contig9066.20006.1|Name=mRNA_S-firma_M_contig9066.20006.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1680bp|location=Sequence derived from alignment at S-firma_M_contig9066:226..2562+ (Sphaerotrichia firma Sfir_13m male)
GGCGCTGGTTCTGCGGGTCCGGGGCCCCGCGAACTGCGTGGAGGTGGCCG
CCGAGGCGCTGAGGAAGCTGGGGCGGATGGAGACGGTGCGAGAGACCCTG
AGCTTCGTCAAGACGACCTCGCCCCACCGCAGGCTCACCCGGGAGCGGCG
CCTGGAGCAGCAGCAGCAGCAACAACAGAAGCAGCAGCAGCAGCAGCAGC
AGCAGCACAAACAGGGCGCTGGTTCTGCGGGTCCGGGGCCCCGCGAACTG
CGTGGAGGTGGCCGCCGAGGCGCTGAGGAAGCTGGGGCGGATGGAGACGG
TGCGAGAGACCCTGAGCTTCGTCAAGACGACCTCGCCCCACCGCAGGCTC
ACCCGGGAGCGGCGCCTGGAGCAGCAGCAGCAGCAACAACAGAAGCAGCA
GCAGCAGCAGCAGCAGCAGCACAAACAGAACAACACCAACAGCAACGGCA
ACAACAGCAACAGCGTCGCCGTTTCGAAGGGCCAGAAGCACGACGCAAGA
AGAGACGGAAAGACCAGGAGCAGCAACAACAACAACGCCAACAGCAACGA
CAACCCGAACAACACCAACAGCAACGGCAACAACAGCAACAGCGTCGCCG
TTTCGAAGGGCCAGAAGCACGACGCAAGAAGAGACGGAAAGACCAGGAGC
AGCAACAACAACAACGCCAACAGCAACGACAACCCGATGGACCCACCACC
ACCACCACCACCACCACCACCACCAACAACAACAACAACAACGACGACAA
CGACAGCAGGAACAGCAACAGCAACAGCAGTAGGGCCCCAACTCATCACC
CCCCACGCCAGGTCTATTCCGCCGCCGCGGCTGCTGCTGCCGCCGCGCCA
TCCCCAAGAAATAGCAACAGGGCTGCCGCCGGGGGGCGAGAAGCGGCGCC
GACCCCACCTACCAACAGCAGCGGTGGAAGCAACAACTACGGCGCCCAGC
AGCACCACCACAACCACCGACGAGACGGAGGGCAGCAGGGCCCTGACGAT
GGACCCACCACCACCACCACCACCACCACCACCACCAACAACAACAACAA
CAACGACGACAACGACAGCAGGAACAGCAACAGCAACAGCAGTAGGGCCC
CAACTCATCACCCCCCACGCCAGGTCTATTCCGCCGCCGCGGCTGCTGCT
GCCGCCGCGCCATCCCCAAGAAATAGCAACAGGGCTGCCGCCGGGGGGCG
AGAAGCGGCGCCGACCCCACCTACCAACAGCAGCGGTGGAAGCAACAACT
ACGGCGCCCAGCAGCACCACCACAACCACCGACGAGACGGAGGGCAGCAG
GGCCCTGACGGCGCGGCAGACAACAACTCGACAGCAATCAGTGGGTCCGG
GGGCGGAAAACAGCAGCAGCATCCGGCCCCGGAAACGAGGGGCGGCGGCG
GCGGCGGCTCCAAAAAGCGGCGCCCACAACAAACGGGCGGTAGCAGCAGC
AGCGGTGGTGGCAGGGGTGGGGGCAGAGAACAAACGCATCACCGGGCGCG
GCAGACAACAACTCGACAGCAATCAGTGGGTCCGGGGGCGGAAAACAGCA
GCAGCATCCGGCCCCGGAAACGAGGGGCGGCGGCGGCGGCGGCTCCAAAA
AGCGGCGCCCACAACAAACGGGCGGTAGCAGCAGCAGCGGTGGTGGCAGG
GGTGGGGGCAGAGAACAAACGCATCACCGG
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