mRNA_S-firma_M_contig9.19910.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9.19910.1
Unique NamemRNA_S-firma_M_contig9.19910.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: B5LWG9_9PHYC (Putative PCNA n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG9_9PHYC)

HSP 1 Score: 422 bits (1084), Expect = 4.700e-147
Identity = 206/262 (78.63%), Postives = 240/262 (91.60%), Query Frame = 1
Query:   25 KQPVEEDGRKLLVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDFMEWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNWKHSEDIGEIEGKYVVRYLEKFGRVGVDSNVEIFLKNGYPLIFRYELSIGTLRFVIAPVND 810
            +QP+ ED RKL+ LMRTSQC QFKSL ECLKELLT+VN+EFIE KGIRLVSIDPG VAMVHLV+NSVEYFY KGTV AG+ M F +RMIRSL+SGD+MEW+IYED+PH M+I+L NS+RRT TV+++KLLDLDEV ISIP+VEYDR+VSMPS EL+KHVREMVAVS++VT++GTR+TLEFIAEG+MASSHITIHPTASGLNWK SED+G+IEGK+VVRYLEKFGRVGV++NVE+FLK  +PLI RYELSIGTLRFVIAPV D
Sbjct:   26 QQPMHED-RKLIFLMRTSQCAQFKSLCECLKELLTDVNMEFIENKGIRLVSIDPGRVAMVHLVVNSVEYFYVKGTVTAGMNMAFLYRMIRSLSSGDYMEWRIYEDNPHAMNIELYNSDRRTRTVSSMKLLDLDEVEISIPNVEYDRVVSMPSSELSKHVREMVAVSNFVTVRGTRSTLEFIAEGEMASSHITIHPTASGLNWKFSEDVGDIEGKFVVRYLEKFGRVGVEANVELFLKTDFPLILRYELSIGTLRFVIAPVKD 286          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: Q6XM81_9PHYC (FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM81_9PHYC)

HSP 1 Score: 405 bits (1040), Expect = 1.240e-140
Identity = 197/257 (76.65%), Postives = 232/257 (90.27%), Query Frame = 1
Query:   43 DGRKLLVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDFMEWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNWKHSEDI-GEIEGKYVVRYLEKFGRVGVDSNVEIFLKNGYPLIFRYELSIGTLRFVIAPVND 810
            DGRKL+ L+RTSQ  QFK+L ECLKELLT+VN+EFI+ KGIRLVSIDPG VAMVHLVINSVEYFYA+GTV AG+ M F +RMIR LTSGD MEW+++ED PH MHI+L N++RRT TV++IKLLDLDEV+ISIP VEYDRIVSMPS EL+KHVREM+AVS+YVT++ T+TTL+FIAEGDMA+SHITIHPTASGLNWK+S+D+ G IEGK+VVRYLEKFGRVGV++NVE+FLK  +PLI RYEL+IGTLRFVIAPV D
Sbjct:   11 DGRKLIALLRTSQSTQFKNLCECLKELLTDVNLEFIQDKGIRLVSIDPGRVAMVHLVINSVEYFYAQGTVTAGLNMSFLYRMIRCLTSGDSMEWRVFEDDPHTMHIELYNNDRRTRTVSSIKLLDLDEVDISIPEVEYDRIVSMPSSELSKHVREMIAVSNYVTVRTTKTTLQFIAEGDMATSHITIHPTASGLNWKYSDDVVGTIEGKFVVRYLEKFGRVGVEANVELFLKKNFPLILRYELTIGTLRFVIAPVKD 267          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: D8LPF8_ECTSI (Proliferating cell nuclear antigen n=2 Tax=root TaxID=1 RepID=D8LPF8_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 2.040e-121
Identity = 173/255 (67.84%), Postives = 211/255 (82.75%), Query Frame = 1
Query:   46 GRKLLVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDFMEWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNWKHSEDIGEIEGKYVVRYLEKFGRVGVDSNVEIFLKNGYPLIFRYELSIGTLRFVIAPVND 810
            GR L+++M+TSQCLQFKSL ECLKELL EVN++FIE KGIRLVSIDPG VAM+HLV+N++E FYAKGTV AG+ +   ++MIRS+TS DFMEW+IYED PH M I+LSNSERRT TV +IKLLDLD  +I IP VE+DR+VSMPS EL+KHVREMV VS +++I+ T+TTLE ++EG+MA SHITI PTASGLNWKHSE   +IEGKY  RY+EKF +  +  NVE+FLK  YPLI R+E+SIG LRF IAP+ D
Sbjct:   24 GRPLVLMMQTSQCLQFKSLIECLKELLCEVNMDFIEGKGIRLVSIDPGRVAMIHLVVNNIESFYAKGTVTAGLNVVVLYKMIRSMTSNDFMEWRIYEDEPHRMEIELSNSERRTKTVTSIKLLDLDAEDIIIPQVEFDRVVSMPSSELSKHVREMVTVSPFISIRATQTTLELVSEGEMAKSHITIEPTASGLNWKHSEKGEDIEGKYFARYIEKFTKNSLAINVELFLKANYPLILRFEISIGCLRFCIAPIQD 278          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: A0A836CHQ2_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ2_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.680e-55
Identity = 107/260 (41.15%), Postives = 165/260 (63.46%), Query Frame = 1
Query:   58 LVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDFM-EWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNW------KHSEDIGE--IEGKYVVRYLEKFGRVGVDSNVEIFLKNGYPLIFRYELSIGTLRFVIAPVND 810
            ++ MR+SQ  Q++ L + LK+L+TE  + F  + G++L+S+DP  VA++HL   S E++Y K  +  G+ +   ++M+R+LT+G +M E+ +      V+ IQL NS++RT T N +KLL L +  + IP   + R++S+PS +L +HVRE+ A+S+ + IK T   L   AEG M SS I I PTASG++W      + SE  G+  +EG Y  ++LE+F R  +D   EIF+K  YPL+ RY LS  T+R VIAPV +
Sbjct:   36 ILCMRSSQTSQWRLLVDFLKDLITECPISF-SQDGMKLISLDPIKVALLHLQAKS-EFYYCKSEITVGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRP-LDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQE 292          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: A0A835Z7L8_9STRA (Proliferating cell nuclear antigen n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L8_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.580e-53
Identity = 104/252 (41.27%), Postives = 159/252 (63.10%), Query Frame = 1
Query:   82 CLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDFM-EWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNW------KHSEDIGE--IEGKYVVRYLEKFGRVGVDSNVEIFLKNGYPLIFRYELSIGTLRFVIAPVND 810
            C Q++ L + LK+L+TE  + F  + G++L+S+DP  VA++HL   S E++Y K  +  G+ +   ++M+R+LT+G +M E+ +      V+ IQL NS++RT T N +KLL L +  + IP   + R++S+PS +L +HVRE+ A+S+ + IK T   L   AEG M SS I I PTASG++W      + SE  G+  +EG Y  ++LE+F R  +D   EIF+K  YPL+ RY LS  T+R VIAPV +
Sbjct:   46 CSQWRLLVDFLKDLITECPISF-NQDGMKLISLDPIKVALLHLQAKS-EFYYCKSEITIGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRP-LDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQE 294          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: A0A835Z2Q5_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.680e-53
Identity = 95/255 (37.25%), Postives = 171/255 (67.06%), Query Frame = 1
Query:   58 LVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDF-MEWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNW--KHSEDIGEI-EGKYVVRYLEKFGRVGVDSNVEIFLKNGYPLIFRYELSIGTLRFVIAPVND 810
            +++MR++Q  Q++S+F+ +K++ TEV  +F + +G+ ++++DP  +A++  V    E++Y K  +  GI +   +R++R+LTS  + +E  ++++   V+H+Q++N ++R+   N IKLL L +  I+IP   +DR++S+PS +L +++RE+ ++S  +T+  TR  L   A+G + SS IT+ PT+SG+++  K +E   E+   ++  RYLEK  R  +DS+ E+FLK GYPL+ RY L+  T+R VIAPVND
Sbjct:   26 ILMMRSTQTSQWRSIFDFVKDVTTEVPFKF-DTEGLSIITLDPLKIALIS-VRAVTEFYYCKAPLNVGINVTVLYRLLRNLTSAGYVLEISMFQNETDVIHVQITNRDKRSVVRNKIKLLRLPDEVITIPSTTFDRVLSIPSSDLQRYIRELSSLSSKITVSSTRDELTLSAQGALGSSEITVRPTSSGVHFLFKDTEKHDEVVSARFYSRYLEKLCRP-IDSSTEVFLKKGYPLVLRYNLATATIRVVIAPVND 277          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: A0A835YX88_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX88_9STRA)

HSP 1 Score: 184 bits (466), Expect = 7.530e-53
Identity = 104/256 (40.62%), Postives = 163/256 (63.67%), Query Frame = 1
Query:   55 LLVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDF-MEWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNWKH--SEDIGEI-EGKYVVRYLEKFGRVGVDSNVEIFLKNGYPLIFRYELSIGTLRFVIAPVND 810
            +LV MRT    Q+++L + LK+L++E  V F    G++LVS+DP +VA+V+L I S E++Y K  +  G+ +   ++M+R+LT+G + +E  + ED P  + + +SN ++RT T N  KLL L +  I+IP   + R++S+PS +  +++RE+  VS+ + I+ TR  L   AEG   S+ I I PTASG++W+   SE   E+ EG +  RY+E+F R  +DS VEIF+K  YPL+ RY+L   T+R VIA   D
Sbjct:   66 ILVCMRTHHTQQWRTLTDALKDLISESPVTF-GPAGMKLVSMDPAHVALVNLQIQS-EHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARP-LDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTD 318          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: A0A835Z117_9STRA (Proliferating cell nuclear antigen n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z117_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.040e-50
Identity = 95/254 (37.40%), Postives = 158/254 (62.20%), Query Frame = 1
Query:   58 LVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDFM-EWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNWKHSEDIGE------IEGKYVVRYLEKFGRVGVDSNVEIFLKNGYPLIFRYELSIGTLRFVIA 798
            +V MRT    Q+++L + LK+L+ E  V F    G++L+S+DP +VA+++L + S E++Y K     G+ +   +RM+R+LT+G ++ E  + E  P  + I ++N E+RT T N +KLL L E  I+IP   + R++S+PS +  +++RE+  VS+ ++I+ T+  L   A G M ++ I + PTASG++W+H E          +EG Y+ +YLE+F R  +D  VEIF++  YPL+ RY +S   +R VIA
Sbjct:   49 VVCMRTHHTQQWRTLIDALKDLIPESPVTF-GASGMKLISMDPAHVALINLQVCS-EFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRP-LDPVVEIFMRPAYPLVLRYSMSTAVVRLVIA 299          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: A0A6C0K8R3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K8R3_9ZZZZ)

HSP 1 Score: 149 bits (375), Expect = 4.600e-40
Identity = 88/255 (34.51%), Postives = 149/255 (58.43%), Query Frame = 1
Query:   52 KLLVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVI--NSVEYFYAK-GTVLAGIKMGFFHRMIRSLTSGDFMEWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTASGLNWKHSEDIGEIEGKYVVRYLEKFGRVGVDSN-VEIFLKNGYPLIFRYEL-SIGTLRFVIAP 801
            ++LV   T Q    K LFE +KE+L +VN+ F +K G+++ ++D    A VH+ +  +  E+F      V+AG+ M    ++I+++ S D +++ IY++ P+ + I   NS + T T + +KLLD++E   SIP VE+D  ++MPS +  K+ R++   S  + I+     LE IA+GD AS H+ I  ++   N   ++    +EG Y V+YL  F +    SN VE++L N YPLI  Y + ++G L++ +AP
Sbjct:    8 EILVSFHTVQGTTIKGLFESMKEILNDVNMRF-DKTGMKITAMDGNKCACVHIKLEGSKFEHFECNLENVVAGVNMLSLFKLIKTIGSHDTVKFNIYKNKPYELVIMFENSSKNTTTKSVLKLLDINEDIYSIPDVEFDSQINMPSLDFQKYCRDLSIFSEVIKIRSGPAGLELIADGDFASQHVCISQSSDDANMHINKGTEAVEGIYSVKYLNLFTKSTNLSNIVELYLMNEYPLILVYYVGNLGKLQYCLAP 261          
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Match: A0A6C0LE56_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LE56_9ZZZZ)

HSP 1 Score: 145 bits (366), Expect = 8.340e-39
Identity = 78/256 (30.47%), Postives = 152/256 (59.38%), Query Frame = 1
Query:   58 LVLMRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNVAMVHLVI--NSVEYFYAKGTVLAGIKMGFFHRMIRSLTSGDFMEWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHVEYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHITIHPTAS-GLNWKHSEDIGEIEGKYVVRYLEKFGR-VGVDSNVEIFLKNGYPLIFRYELS-IGTLRFVIAPVND 810
            +V ++T Q    + LFE LK++LT+VN++    +G++++S+D    A+V+L +  N  E FY K ++ AG+ M   +++I+S+ + D + + I   S   + I++ N E++TN +  +KLLD+DE  + IP++E+D + +MPS +   ++RE+  +++ VT++    T     EGD A + I +  + +  +  +H        G + ++YL  F +   + + VEI+LKN +PLI  Y ++ +G L++ +AP+ +
Sbjct:    7 IVEIKTVQSNAIRILFEALKDILTDVNLQISSSEGLKIISMDGSKQAVVNLKLEANKFEKFYCKNSMRAGLNMTSLYKIIKSVKNSDIITFYILAGSSTKLQIEIENKEKKTNILTVLKLLDIDEDILDIPNIEFDTVKTMPSNDFQSYIRELSIITNKVTLESKNNTFSLSGEGDFAETKINVGDSNTIDIKTEH-----HAMGTFYIKYLLLFTKSTNLCTTVEIYLKNKFPLILVYNVANLGKLQYCLAPLVE 257          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9.19910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWG9_9PHYC4.700e-14778.63Putative PCNA n=1 Tax=Feldmannia species virus Tax... [more]
Q6XM81_9PHYC1.240e-14076.65FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPF8_ECTSI2.040e-12167.84Proliferating cell nuclear antigen n=2 Tax=root Ta... [more]
A0A836CHQ2_9STRA1.680e-5541.15Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z7L8_9STRA1.580e-5341.27Proliferating cell nuclear antigen n=2 Tax=Tribone... [more]
A0A835Z2Q5_9STRA3.680e-5337.25Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835YX88_9STRA7.530e-5340.63Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z117_9STRA2.040e-5037.40Proliferating cell nuclear antigen n=3 Tax=Tribone... [more]
A0A6C0K8R3_9ZZZZ4.600e-4034.51Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0LE56_9ZZZZ8.340e-3930.47Uncharacterized protein n=1 Tax=viral metagenome T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9contigS-firma_M_contig9:9374..10186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score367.1
Seed ortholog evalue7.2e-99
Seed eggNOG ortholog654926.Q8QNE7_ESV1K
EggNOG free text desc.Proliferating cell nuclear antigen, C-terminal domain
EggNOG OGs4QCG1@10239,4QXUJ@35237
COG Functional cat.L
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size813
Cds size813
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828721.0467126-CDS-S-firma_M_contig9:9373..101861622828721.0467126-CDS-S-firma_M_contig9:9373..10186Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 9374..10186 +
1697105122.024118-CDS-S-firma_M_contig9:9373..101861697105122.024118-CDS-S-firma_M_contig9:9373..10186Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 9374..10186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9.19910.1prot_S-firma_M_contig9.19910.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9 9374..10186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9.19910.1

>prot_S-firma_M_contig9.19910.1 ID=prot_S-firma_M_contig9.19910.1|Name=mRNA_S-firma_M_contig9.19910.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=271bp
MSSSEPTGKQPVEEDGRKLLVLMRTSQCLQFKSLFECLKELLTEVNVEFI
EKKGIRLVSIDPGNVAMVHLVINSVEYFYAKGTVLAGIKMGFFHRMIRSL
TSGDFMEWKIYEDSPHVMHIQLSNSERRTNTVNTIKLLDLDEVNISIPHV
EYDRIVSMPSQELAKHVREMVAVSHYVTIKGTRTTLEFIAEGDMASSHIT
IHPTASGLNWKHSEDIGEIEGKYVVRYLEKFGRVGVDSNVEIFLKNGYPL
IFRYELSIGTLRFVIAPVND*
back to top

mRNA from alignment at S-firma_M_contig9:9374..10186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9.19910.1 ID=mRNA_S-firma_M_contig9.19910.1|Name=mRNA_S-firma_M_contig9.19910.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=813bp|location=Sequence derived from alignment at S-firma_M_contig9:9374..10186+ (Sphaerotrichia firma Sfir_13m male)
ATGTCTTCCTCGGAGCCGACCGGAAAACAACCGGTCGAGGAGGACGGGAG GAAACTGCTGGTTTTGATGCGCACGTCACAGTGTCTCCAGTTCAAGAGTC TTTTCGAGTGCCTGAAAGAACTCCTCACTGAAGTTAACGTAGAGTTCATC GAGAAGAAGGGCATCCGGTTGGTTTCGATCGACCCTGGCAACGTCGCGAT GGTCCACCTCGTTATCAACTCCGTCGAGTACTTCTACGCTAAAGGGACCG TTCTCGCCGGCATCAAGATGGGATTCTTCCACCGTATGATCCGCAGCCTC ACGTCTGGCGACTTCATGGAGTGGAAAATCTACGAGGATTCCCCTCATGT GATGCACATCCAGCTCTCCAACAGCGAGCGCAGGACTAACACCGTCAACA CGATCAAACTCCTTGACCTAGACGAGGTGAATATCAGCATCCCTCACGTG GAGTACGACAGGATTGTTTCGATGCCGAGCCAGGAGTTGGCGAAGCACGT TCGAGAGATGGTGGCGGTCAGCCACTACGTGACCATCAAAGGGACAAGGA CAACCCTCGAGTTTATCGCCGAGGGGGACATGGCCTCGAGTCACATCACG ATTCACCCGACGGCGTCTGGTCTGAATTGGAAGCACAGCGAAGACATTGG TGAGATAGAGGGCAAGTATGTCGTCCGCTACCTGGAAAAGTTCGGGCGCG TTGGAGTTGACTCCAATGTCGAGATTTTTCTGAAGAACGGGTATCCTCTT ATTTTTAGGTACGAGCTCTCGATCGGAACTCTCAGGTTCGTCATCGCTCC GGTGAACGATTAA
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9:9374..10186+

>mRNA_S-firma_M_contig9.19910.1 ID=mRNA_S-firma_M_contig9.19910.1|Name=mRNA_S-firma_M_contig9.19910.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1626bp|location=Sequence derived from alignment at S-firma_M_contig9:9374..10186+ (Sphaerotrichia firma Sfir_13m male)
ATGTCTTCCTCGGAGCCGACCGGAAAACAACCGGTCGAGGAGGACGGGAG
GAAACTGCTGGTTTTGATGCGCACGTCACAGTGTCTCCAGTTCAAGAGTC
TTTTCGAGTGCCTGAAAGAACTCCTCACTGAAGTTAACGTAGAGTTCATC
GAGAAGAAGGGCATCCGGTTGGTTTCGATCGACCCTGGCAACGTCGCGAT
GGTCCACCTCGTTATCAACTCCGTCGAGTACTTCTACGCTAAAGGGACCG
TTCTCGCCGGCATCAAGATGGGATTCTTCCACCGTATGATCCGCAGCCTC
ACGTCTGGCGACTTCATGGAGTGGAAAATCTACGAGGATTCCCCTCATGT
GATGCACATCCAGCTCTCCAACAGCGAGCGCAGGACTAACACCGTCAACA
CGATCAAACTCCTTGACCTAGACGAGGTGAATATCAGCATCCCTCACGTG
GAGTACGACAGGATTGTTTCGATGCCGAGCCAGGAGTTGGCGAAGCACGT
TCGAGAGATGGTGGCGGTCAGCCACTACGTGACCATCAAAGGGACAAGGA
CAACCCTCGAGTTTATCGCCGAGGGGGACATGGCCTCGAGTCACATCACG
ATTCACCCGACGGCGTCTGGTCTGAATTGGAAGCACAGCGAAGACATTGG
TGAGATAGAGGGCAAGTATGTCGTCCGCTACCTGGAAAAGTTCGGGCGCG
TTGGAGTTGACTCCAATGTCGAGATTTTTCTGAAGAACGGGTATCCTCTT
ATTTTTAGGTACGAGCTCTCGATCGGAACTCTCAGGTTCGTCATCGCTCC
GGTGAACGATTAAATGTCTTCCTCGGAGCCGACCGGAAAACAACCGGTCG
AGGAGGACGGGAGGAAACTGCTGGTTTTGATGCGCACGTCACAGTGTCTC
CAGTTCAAGAGTCTTTTCGAGTGCCTGAAAGAACTCCTCACTGAAGTTAA
CGTAGAGTTCATCGAGAAGAAGGGCATCCGGTTGGTTTCGATCGACCCTG
GCAACGTCGCGATGGTCCACCTCGTTATCAACTCCGTCGAGTACTTCTAC
GCTAAAGGGACCGTTCTCGCCGGCATCAAGATGGGATTCTTCCACCGTAT
GATCCGCAGCCTCACGTCTGGCGACTTCATGGAGTGGAAAATCTACGAGG
ATTCCCCTCATGTGATGCACATCCAGCTCTCCAACAGCGAGCGCAGGACT
AACACCGTCAACACGATCAAACTCCTTGACCTAGACGAGGTGAATATCAG
CATCCCTCACGTGGAGTACGACAGGATTGTTTCGATGCCGAGCCAGGAGT
TGGCGAAGCACGTTCGAGAGATGGTGGCGGTCAGCCACTACGTGACCATC
AAAGGGACAAGGACAACCCTCGAGTTTATCGCCGAGGGGGACATGGCCTC
GAGTCACATCACGATTCACCCGACGGCGTCTGGTCTGAATTGGAAGCACA
GCGAAGACATTGGTGAGATAGAGGGCAAGTATGTCGTCCGCTACCTGGAA
AAGTTCGGGCGCGTTGGAGTTGACTCCAATGTCGAGATTTTTCTGAAGAA
CGGGTATCCTCTTATTTTTAGGTACGAGCTCTCGATCGGAACTCTCAGGT
TCGTCATCGCTCCGGTGAACGATTAA
back to top