prot_S-firma_M_contig8716.19587.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig8716.19587.1
Unique Nameprot_S-firma_M_contig8716.19587.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length133
Homology
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BLAST of mRNA_S-firma_M_contig8716.19587.1 vs. uniprot
Match: A0A6H5K552_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 6.090e-53
Identity = 91/117 (77.78%), Postives = 98/117 (83.76%), Query Frame = 0 
Query:   10 GGRKARGKRRPPAIDFDAPPVSDKALDGPPKPKGRGRRTLDPTLLSGDYVKRALKAAEDKSSDYALPENAGFKTKDLGELCLRPGAFTKRWTGGGETGAVSEGARLDLQGFHDTGGG 126
            GGRKARGKRRPPAIDFDAPPV++ AL  PPKPK RGRR+ +PTLLS DYVKRA KAAED SS+YALPENA FKTKDLGEL LR GAFTKRW  G E G  S+GAR+DLQGFHDT  G
Sbjct:   23 GGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRTGAFTKRWAAG-EAGEASDGARVDLQGFHDTNNG 138
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BLAST of mRNA_S-firma_M_contig8716.19587.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 8.400e-48
Identity = 89/114 (78.07%), Postives = 95/114 (83.33%), Query Frame = 0 
Query:   10 GGRKARGKRRPPAIDFDAPPVSDKALDGPPKPKGRGRRTLDPTLLSGDYVKRALKAAEDKSSDYALPENAGFKTKDLGELCLRPGAFTKRWTGGGETGAVSEGARLDLQGFHDT 123
            GGRKARGKRRPPAIDFDA PV++ AL  P KPK RGRR+ +PTLLS DYVKRA KAAED SS+YALPENA FKTKDLGEL LR GAFTKRW  G E G  SEGAR+DLQGFHDT
Sbjct:  486 GGRKARGKRRPPAIDFDAAPVAESALAPPAKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRTGAFTKRWAAG-EAGEASEGARVDLQGFHDT 598
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8716.19587.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K552_9PHAE6.090e-5377.78Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
D8LD70_ECTSI8.400e-4878.07Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8716contigS-firma_M_contig8716:334..4384 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8716.19587.1mRNA_S-firma_M_contig8716.19587.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig8716 334..4384 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig8716.19587.1 ID=prot_S-firma_M_contig8716.19587.1|Name=mRNA_S-firma_M_contig8716.19587.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=133bp
NAEEDGEEGGGRKARGKRRPPAIDFDAPPVSDKALDGPPKPKGRGRRTLD
PTLLSGDYVKRALKAAEDKSSDYALPENAGFKTKDLGELCLRPGAFTKRW
TGGGETGAVSEGARLDLQGFHDTGGGSDDDLLF
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