mRNA_S-firma_F_contig10250.384.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10250.384.1
Unique NamemRNA_S-firma_F_contig10250.384.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10250.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10250contigS-firma_F_contig10250:1251..1557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.2622597-CDS-S-firma_F_contig10250:1250..15561622815555.2622597-CDS-S-firma_F_contig10250:1250..1556Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 1251..1556 +
1696949412.4296741-CDS-S-firma_F_contig10250:1250..15561696949412.4296741-CDS-S-firma_F_contig10250:1250..1556Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 1251..1556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10250.384.1prot_S-firma_F_contig10250.384.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10250 1251..1556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10250.384.1

>prot_S-firma_F_contig10250.384.1 ID=prot_S-firma_F_contig10250.384.1|Name=mRNA_S-firma_F_contig10250.384.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=102bp
AEQLQERQHRHPSSPAPSTDASVPKPAETGATPVPGLSTVDGGDSGTAAD
GKTPTLPTTPGRADGEQTPIPGTSPAQPQQQTPVDELETGSSTTAAAATA
AG
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mRNA from alignment at S-firma_F_contig10250:1251..1557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10250.384.1 ID=mRNA_S-firma_F_contig10250.384.1|Name=mRNA_S-firma_F_contig10250.384.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=307bp|location=Sequence derived from alignment at S-firma_F_contig10250:1251..1557+ (Sphaerotrichia firma ET2_F female)
GCGGAACAGCTGCAAGAGCGGCAGCATCGGCATCCATCATCTCCTGCTCC
TAGCACCGATGCCTCGGTGCCGAAACCTGCCGAGACCGGTGCTACTCCTG
TCCCCGGGCTATCTACGGTCGACGGTGGTGACAGCGGCACCGCTGCCGAT
GGTAAGACACCCACCCTACCCACAACGCCGGGCAGAGCGGACGGAGAACA
GACACCGATACCCGGGACATCCCCTGCCCAGCCCCAGCAGCAAACGCCGG
TCGACGAACTGGAGACCGGTAGTTCGACGACAGCGGCGGCGGCGACAGCG
GCTGGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10250:1251..1557+

>mRNA_S-firma_F_contig10250.384.1 ID=mRNA_S-firma_F_contig10250.384.1|Name=mRNA_S-firma_F_contig10250.384.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=612bp|location=Sequence derived from alignment at S-firma_F_contig10250:1251..1557+ (Sphaerotrichia firma ET2_F female)
GCGGAACAGCTGCAAGAGCGGCAGCATCGGCATCCATCATCTCCTGCTCC
TAGCACCGATGCCTCGGTGCCGAAACCTGCCGAGACCGGTGCTACTCCTG
TCCCCGGGCTATCTACGGTCGACGGTGGTGACAGCGGCACCGCTGCCGAT
GGTAAGACACCCACCCTACCCACAACGCCGGGCAGAGCGGACGGAGAACA
GACACCGATACCCGGGACATCCCCTGCCCAGCCCCAGCAGCAAACGCCGG
TCGACGAACTGGAGACCGGTAGTTCGACGACAGCGGCGGCGGCGACAGCG
GCTGGGGCGGAACAGCTGCAAGAGCGGCAGCATCGGCATCCATCATCTCC
TGCTCCTAGCACCGATGCCTCGGTGCCGAAACCTGCCGAGACCGGTGCTA
CTCCTGTCCCCGGGCTATCTACGGTCGACGGTGGTGACAGCGGCACCGCT
GCCGATGGTAAGACACCCACCCTACCCACAACGCCGGGCAGAGCGGACGG
AGAACAGACACCGATACCCGGGACATCCCCTGCCCAGCCCCAGCAGCAAA
CGCCGGTCGACGAACTGGAGACCGGTAGTTCGACGACAGCGGCGGCGGCG
ACAGCGGCTGGG
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